BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23820.1
Length=1411
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921438 jgi|Araly1|921438|scaffold_102719.1 1881 0.0
Ahg476155 jgi|Araly1|476155|fgenesh2_kg.2__1285__AT1G70310.1 996 0.0
> Ahg921438 jgi|Araly1|921438|scaffold_102719.1
Length=1178
Score = 1881 bits (1018), Expect = 0.0
Identities = 1122/1172 (96%), Gaps = 8/1172 (1%)
Strand=Plus/Plus
Query 4 aaaaaaTGAAATGATATTTTCAGTTG-TACGCTCTTCTCTTCCTTATATCTTCCGCTTCA 62
||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||
Sbjct 11 AAAAAATGAAATGATATGTTCAG-TGTTACGCTCTTCTCTTCCTTATATCTTCAGCTTCA 69
Query 63 CTTCACACCAAAATCACCA-C-CT-CTCACAAACCCTAGTTCCTCCTCTCTCTCATTTCT 119
||||||| ||||||||||| | || |||| |||||||| | |||||||||||||||||
Sbjct 70 CTTCACATCAAAATCACCACCTCTCCTCAAAAACCCTA-AT--TCCTCTCTCTCATTTCT 126
Query 120 CGGAGATATTCACCAGAGCAATAACCATGGACGCTAAAGAAACCTCTGCCACCGATTTGA 179
|||||||||||||||||||| |||||||||| ||||||||| |||| |||||||||||||
Sbjct 127 CGGAGATATTCACCAGAGCATTAACCATGGATGCTAAAGAATCCTCCGCCACCGATTTGA 186
Query 180 AAAGACCGAGAGAAGAGGATGATAACGGCGGCGCCGCTACCATGGAGACGGAGAACGGAG 239
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 187 AAAGACCGAGAGAAGAGGATGATAACGGCGCCGCCGCAACCATGGAGACGGAGAACGGAG 246
Query 240 ATCAGAAAAAGGAACCTGCTTGTTTCTCCACTGTTATTCCTGGGTGGTTCTCTGAAATGA 299
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 247 ATCAGAAAAAGGAGCCTGCTTGTTTCTCCACTGTCATTCCTGGCTGGTTCTCTGAAATGA 306
Query 300 GTCCTATGTGGCCAGGAGAGGCACACTCATTGAAGGTTGAGAAAGTTTTGTTTCAAGGGA 359
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GTCCTATGTGGCCAGGAGAAGCACACTCATTGAAGGTTGAGAAAGTTTTGTTTCAAGGGA 366
Query 360 AATCAGATTATCAGGATGTTATTGTTTTCCAGTCTGCAACATATGGAAAAGTTTTGGTTT 419
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 367 AATCAGATTATCAAGATGTGATTGTTTTCCAGTCTGCAACATATGGAAAAGTTTTGGTTT 426
Query 420 TGGATGGAGTAATCCAACTTACGGAGAGAGATGAATGTGCTTATCAGGAAATGATCACTC 479
|||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 427 TGGATGGAGTAATCCAACTTACCGAGAGAGATGAATGTGCCTATCAAGAAATGATCACTC 486
Query 480 ATCTTCCTTTGTGTTCTATCCCTAACCCTAAGAAGGTTTTGGTCATTGGAGGAGGAGATG 539
||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 487 ATCTTCCTTTGTGCTCTATTCCTAACCCTAAGAAGGTCTTGGTTATTGGAGGAGGAGATG 546
Query 540 GAGGTGTCCTGCGGGAAGTTGCACGCCATGCTTCTATTGAGCAGATTGACATGTGTGAAA 599
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 547 GAGGTGTCCTGCGGGAAGTTGCACGCCATGCTTCTGTTGAGCAGATTGACATGTGTGAAA 606
Query 600 TTGATAAAATGGTGGTCGACGTGTCTAAGCAATTTTTCCCTGATGTAGCAATTGGATATG 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 607 TTGATAAAATGGTGGTCGACGTGTCTAAGCAATTTTTCCCTGATGTAGCAATTGGATACG 666
Query 660 AGGATCCTCGCGTGAACCTTGTCATTGGCGATGGTGTTGCTTTCTTGAAGAATGCTGCTG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGGATCCTCGCGTGAACCTTGTCATTGGCGATGGTGTTGCTTTCTTGAAGAATGCTGCTG 726
Query 720 AAGGATCATACGATGCAGTTATTGTTGACTCTTCAGATCCAATCGGTCCTGCAAAGGAGC 779
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 AAGGATCATACGATGCGGTTATTGTTGACTCTTCAGATCCAATCGGTCCTGCAAAGGAGC 786
Query 780 TGTTTGAGAAACCCTTCTTCCAATCTGTGGCTAGAGCTCTTCGTCCTGGTGGAGTTGTGT 839
| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 787 TATTTGAGAAACCCTTCTTCCAATCCGTGGCTAGAGCTCTTCGTCCTGGTGGGGTTGTGT 846
Query 840 GCACTCAAGCTGAAAGCTTGTGGCTTCACATGGACATCATCGAAGACATTGTTTCCAACT 899
| ||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 847 GTACTCAGGCTGAAAGCTTGTGGCTTCACATGGACATCATCGAAGACATTGTTGCAAACT 906
Query 900 GCCGTGAGATCTTCAAGGGTTCTGTGAACTATGCTTGGACCAGCGTTCCAACATACCCCA 959
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 907 GCCGTGAGATCTTCAAGGGTTCTGTGAACTATGCCTGGACCAGCGTTCCAACATACCCCA 966
Query 960 GTGGGGTCATTGGATTTATGCTTTGTTCAACTGAAGGACCTGATGTTGACTTCAAACACC 1019
||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 967 GTGGGGTTATTGGATTTATGCTTTGTTCTACTGAGGGACCTGATGTTGACTTCAAACACC 1026
Query 1020 CACTGAACCCAATTGACGAGAGCTCCAGCAAATCAAATGGACCTTTGAAGTTTTACAATG 1079
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1027 CACTGAACCCAATTGACGAGAGCTCAAGCAAATCAAATGGACCTTTGAAGTTTTACAATG 1086
Query 1080 CCGAGATTCATTCAGCTGCATTCTGCTTGCCTTCTTTCGCCAAGAAGGTCATTGAGTCAA 1139
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1087 CCGAGATTCATTCAGCCGCATTCTGCTTGCCTTCTTTCGCCAAGAAGGTAATTGAGTCAA 1146
Query 1140 AAGCCAATTGAAAAGGGAAAGAAAACTAATCT 1171
||||||||||||||| ||||||||||||||||
Sbjct 1147 AAGCCAATTGAAAAGAGAAAGAAAACTAATCT 1178
> Ahg476155 jgi|Araly1|476155|fgenesh2_kg.2__1285__AT1G70310.1
Length=1167
Score = 996 bits (539), Expect = 0.0
Identities = 855/1006 (85%), Gaps = 28/1006 (3%)
Strand=Plus/Plus
Query 177 TGAAAAGACC--GAG-AGAAGAGGATGATAACGGCGGCGCCGCTACCATGGAGACGGAGA 233
|||| ||||| ||| || |||||| || || |||||||| ||||||| || ||||
Sbjct 97 TGAAGAGACCTAGAGAAGCAGAGGAGGACAATAACGGCGCCG---CCATGGAAACAGAGA 153
Query 234 ACGG-AGATCAG-AA-AAAGGAACCTGCTTGTTTCTCCACTGTTATTCCTGGGTGGTTCT 290
|||| || || || |||||| ||| ||||| | ||| ||||||||||||| |||||||
Sbjct 154 ACGGTGGAGGAGAAATAAAGGAGCCTTCTTGTATGTCCTCTGTTATTCCTGGATGGTTCT 213
Query 291 CTGAAATGAGTCCTATGTGGCCAGGAGAGGCACACTCAT-TGAAGGTTGAGAAAG-TTTT 348
|||| || |||||||||||||||||||| ||||| || | |||| || ||| ||| || |
Sbjct 214 CTGAGATCAGTCCTATGTGGCCAGGAGAAGCACATTC-TCTGAAAGTAGAG-AAGATTCT 271
Query 349 GTTTCAAGGGAAATCAGATTATCAGGATGTTATTGTTTTCCAGTCTGCAACATATGGAAA 408
|| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 272 CTTCCAAGGAAAATCAGATTATCAAGATGTTATTGTTTTCCAGTCTGCAACATATGGAAA 331
Query 409 AGTTTTGGTTTTGGATGGAGTAATCCAACTTACGGAGAGAGATGAATGTGCTTATCAGGA 468
|||||||||||||||||||| || ||||| || || |||||||||||||| ||||||||
Sbjct 332 GGTTTTGGTTTTGGATGGAGTGATTCAACTCACTGAAAGAGATGAATGTGCGTATCAGGA 391
Query 469 AATGATCACTCATCTTCCTTTGTGTTCTATC-CCTAACCCTAAGAAGGTTTTGGTCATTG 527
|||||||||||| ||||| ||||| |||||| || ||||| || ||||| |||| ||||
Sbjct 392 AATGATCACTCACCTTCCCTTGTGCTCTATCTCC-AACCCCAAAAAGGTCCTGGTTATTG 450
Query 528 GAGGAGGAGATGGAGGTGTCCTGCGGGAAGTTGCACGCCAT-GCTTCTATTGAGCAGATT 586
|||||||||||||||| ||| | |||||||| ||||| ||| | |||| |||||||||||
Sbjct 451 GAGGAGGAGATGGAGGAGTCTTACGGGAAGTGGCACGTCATAG-TTCTGTTGAGCAGATT 509
Query 587 GACATGTGTGAAATTGATAAAATGGTGGTCGACGTGTCTAAGCAATTTTTCCCTGATGTA 646
||||| ||||| ||||||||||||||||| || ||| ||||||| ||||||||| |||||
Sbjct 510 GACATTTGTGAGATTGATAAAATGGTGGTTGATGTGGCTAAGCAGTTTTTCCCTAATGTA 569
Query 647 GCAATTGGATATGAGGATCCTCGCGTGAACCTTGTCATTGGCGATGGTGTTGCTTTCTTG 706
||| ||||||| |||||| |||| || ||||| ||||||||||||||||||||||||||
Sbjct 570 GCAGTTGGATACGAGGATTCTCGTGTCAACCTCATCATTGGCGATGGTGTTGCTTTCTTG 629
Query 707 AAGAATGCTGCTGAAGGATCATACGATGCAGTTATTGTTGACTCTTCAGATCCAATCGGT 766
|||||||||||||||||| | || ||||||||||||||||| || || ||||| || |||
Sbjct 630 AAGAATGCTGCTGAAGGAACCTATGATGCAGTTATTGTTGATTCATCGGATCCGATTGGT 689
Query 767 CCTGCAAAGGAGCTGTTTGAGAAACCCTTCTTCCAATCTGTGGCTAGAGCTCTTCGTCCT 826
|| ||||| ||||| ||||||||||| ||||| | || ||| ||||||||||||||||
Sbjct 690 CCAGCAAAAGAGCTATTTGAGAAACCTTTCTTTGAGTCAGTGAATAGAGCTCTTCGTCCT 749
Query 827 GGTGGAGTTGTGTGCACTCAAGCTGAAAGCTTGTGGCTTCACATGGACATCATCGAAGAC 886
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 GGTGGAGTTGTGTGCACACAAGCTGAAAGCTTGTGGCTTCACATGGACATCATCGAAGAC 809
Query 887 ATTGTTTCCAACTGCCGTGAGATCTTCAAGGGTTCTGTGAACTATGCTTGGACCAGCGTT 946
|||||||| || |||||||||||||| || || ||||| ||||| |||||||| ||||||
Sbjct 810 ATTGTTTCGAATTGCCGTGAGATCTTTAAAGGATCTGTTAACTACGCTTGGACTAGCGTT 869
Query 947 CCAACATACCCCAGTGGGGTCATTGGATTTATGCTTTGTTCAACTGAAGGACCTGATGTT 1006
||||| ||||| || || ||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 870 CCAACTTACCCGAGCGGAGTCATTGGATTCATGCTTTGTTCGACTGAAGGACCACATGTC 929
Query 1007 GACTTCAA-ACACCCACTGAACCCAATTGA--C-GA-GA--GCTCCAGCAAATCAAATGG 1059
|| ||||| | | ||| ||| ||||| || | || || |||| ||||||||| ||||
Sbjct 930 GATTTCAAGA-AGCCAGTGAGTCCAATCGATGCCGATGAAAGCTCTAGCAAATCACATGG 988
Query 1060 ACCTTTGAAGTTTTACAATGCCGAGATTCATTCAGCTGCATTCTGCTTGCCTTCTTTCGC 1119
||| |||||||||||||| || |||||||| || || || |||||||| || ||||||||
Sbjct 989 ACCCTTGAAGTTTTACAACGCTGAGATTCACTCTGCCGCTTTCTGCTTACCCTCTTTCGC 1048
Query 1120 CAAGAAGGTCATTGAGTCAAAAGCCAATT-GAAAAGGGAA-AGAAA 1163
|||||||| ||||| || |||||||| | |||| | ||| |||||
Sbjct 1049 TAAGAAGGTGATTGATTCGAAAGCCAACTAGAAA-GAGAAGAGAAA 1093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52754989325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5