BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23830.1
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472644 jgi|Araly1|472644|fgenesh2_kg.1__2598__AT1G23830.1 1550 0.0
Ahg921440 jgi|Araly1|921440|scaffold_102721.1 134 2e-30
> Ahg472644 jgi|Araly1|472644|fgenesh2_kg.1__2598__AT1G23830.1
Length=1091
Score = 1550 bits (839), Expect = 0.0
Identities = 1014/1098 (92%), Gaps = 13/1098 (1%)
Strand=Plus/Plus
Query 35 AAAGAGATCAACAAATGGAGACGAATAGCGAAGAGAAGCTAAGTGTCATCGAACTACTAA 94
||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 1 AAAGAGATCAACAGATGGAGACCAAGAGCGAAGAGAAGCTAAGTGTCATCGAACTTCTAA 60
Query 95 AACGAGCT-CTTAAGCTACTCTTTGGTAACATCAATCTCTTGCTCTTCCTATGCCTCTGC 153
||| |||| | ||||||||||| ||||| | ||||||||||||||||||||||||||||
Sbjct 61 AACTAGCTGC-GAAGCTACTCTTCGGTAATAGCAATCTCTTGCTCTTCCTATGCCTCTGC 119
Query 154 TCTCTCCCACTGttttttttCTTGATCTTCTTTGAGCTCTCCCTCCAAACCACCGTCTAT 213
|||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| |
Sbjct 120 TCTCTCCCACTGTTTTGTTTCTTGATCTTCTTTGAGCTCTCACTCCAAACCACTGTCTCT 179
Query 214 CTCACTTCCCAATTCCTCTGGAAACTACTCATTCTGGGAGAAGACTTGCCGGAAAATGAT 273
||||||||||||||||||| |||||||||| ||| ||||| |||||||| || ||||||
Sbjct 180 CTCACTTCCCAATTCCTCTTCAAACTACTCACTCTTGGAGAGGACTTGCCAGAGAATGAT 239
Query 274 CTGATTCTCATATCAGAGAAAAAGAATGATCTGATTTCATGGCTGATCCAGACATTTCTG 333
|||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||
Sbjct 240 CTGATTCTCATATCAGAGAAAAAGAATGATATGATTCCATGGCTGATTCAGACATCTCTG 299
Query 334 CTCTACTTCTTCCCCTACACCATTCTTGACCTTCTTACCACCACCACGATCGTTGCAGCA 393
|||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 300 CTCTACTTTTTCCCCTACACCATTCTTGACCTTCTTACTACCACAACAATCGTTGCAGCA 359
Query 394 TCTTCGATTGTTTACACATCCAAGGAAGAGCCGTTAGGGCTGCTTTATTTGGTAGAG-AG 452
|||||||||||||||||||||||||||||||||||||||||||| ||||||| | | ||
Sbjct 360 TCTTCGATTGTTTACACATCCAAGGAAGAGCCGTTAGGGCTGCTACATTTGGTTG-GCAG 418
Query 453 ATCTATCAAAATATGTCAGAACAGAGTAGGAGGTTGTCTGATCACATCTCTCTATGTCCT 512
|||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 419 ATCTGTCAAAATATGTCAGAACAGAGTAGGTGGTTGTCTGATCACATCTCTTTATGTCCT 478
Query 513 CCTTTGGTCAACCTCAGtttttcttttctttttcttgttcttttttcttcagtttctctc 572
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 479 CCTTTGGTCAACCTCTGTTTTTCTTTTCCTTTTCTTGTTCTTTTTTCTTCAGTTTCTCTC 538
Query 573 tGGTTCAACCAACTACGTATCCATTCCTTATCTCTCACGCGAATACAAAGGGTTCCACTA 632
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 539 TGGTTCTACCAACTACGTATCCATTCCTTATCTCTCACGCGAATACAAAAGGTTCCACTA 598
Query 633 CCAACCAAC-GGGTCTATTCAACGTGGTAGTGCCT-CTGACTCTTCTGATGCAATGTACT 690
||| || | ||| || ||| ||||||| ||| | |||||||||||||| || ||||||
Sbjct 599 CCAGGCAGCAGGG-CTGTTCGACGTGGTGGTG-GTGCTGACTCTTCTGATTCAGTGTACT 656
Query 691 CTATTTATAGTTCTGACTGCAAAGTAT-AGTAAGTGGAGCTCCGGATGGAACATGGGTTT 749
|| ||||||||||||||||||||| | || |||||||||||||| ||||||||||||||
Sbjct 657 CTCTTTATAGTTCTGACTGCAAAG-CTCAGCAAGTGGAGCTCCGGTTGGAACATGGGTTT 715
Query 750 GGTTGTTTCGGTCTTGGAAGAAGACGAAGATGGTCAAGGCATCTACGGAGGAGATGCTCT 809
|||||||||||||||||||||||||||||||| ||||||||| || ||| | ||||||||
Sbjct 716 GGTTGTTTCGGTCTTGGAAGAAGACGAAGATGATCAAGGCATTTATGGAAGCGATGCTCT 775
Query 810 GTCTCTTTCAGGTTGGTATAGAAAAGGACATGAGAAGCGTGACCTCTGGTTGATGTTAAT 869
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GTCTCTTTCAGCTTGGTATAGAAAAGGACATGAGAAGCGTGACCTCTGGTTGATGTTAAT 835
Query 870 GTTCTTGGTCTTCGGTCTTGCGACAAGGATGCCATGTTTATACTCCAAATGCAGTGCGAG 929
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 836 GTTCTTGGTCTTCAGTCTTGCGATGAGGATGCCATGTTTATACTCCAAATGCAGTGCGAG 895
Query 930 TGGAAATGGAGTGATGTACACTGGCTTCTATGTAGGCTTGATTTGTGTTGGCAATTTACT 989
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 896 TGGAAATGGAGTGATGTACACTGGTTTCTATGTAGGCTTGATTTGTGTTGGGAATTTGCT 955
Query 990 TAAATGGGTGACTTGTCTTGCCTGTTACCATGATTGTAAAACTATGGTTTTGAGAAAAAA 1049
||||||||||||||||||||| |||||||||||||||||||||||||||| ||| || ||
Sbjct 956 TAAATGGGTGACTTGTCTTGCTTGTTACCATGATTGTAAAACTATGGTTTCGAGGAAGAA 1015
Query 1050 GCGTGATGTAGAACAAGCTAAAACTCCTGCTGCTTAA-GAGACTTTGGCTGAGATCAATT 1108
|| |||||| ||||||||||||| || |||||||||| ||| |||||||||||||||||
Sbjct 1016 GCATGATGTTGAACAAGCTAAAATTCTTGCTGCTTAACGAG--TTTGGCTGAGATCAATT 1073
Query 1109 CAAAGTGTGAATCTTTAT 1126
||||||||||||||||||
Sbjct 1074 CAAAGTGTGAATCTTTAT 1091
> Ahg921440 jgi|Araly1|921440|scaffold_102721.1
Length=731
Score = 134 bits (72), Expect = 2e-30
Identities = 101/115 (88%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 296 AGAATGATCTGATTTCATGGCTGATCCAGACATTTCTGCTCTACTTCTTCCCCTACACCA 355
|||||||||| ||| ||||| || | ||||||| ||| ||||||||||| |||||||| |
Sbjct 238 AGAATGATCTTATTCCATGGTTGGTGCAGACATCTCTACTCTACTTCTTTCCCTACACTA 297
Query 356 TTCTTGACCTTCTTACCACCACCACGATCGTTGCAGCATCTTCGATTGT-TTACA 409
|| | ||||| |||||||||||||||||||||||||||||||||||| | |||||
Sbjct 298 TTATCGACCTCCTTACCACCACCACGATCGTTGCAGCATCTTCGATT-TCTTACA 351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42087700368
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5