BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23840.1
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921440 jgi|Araly1|921440|scaffold_102721.1 547 5e-155
Ahg472644 jgi|Araly1|472644|fgenesh2_kg.1__2598__AT1G23830.1 252 5e-66
Ahg921441 jgi|Araly1|921441|scaffold_102722.1 207 1e-52
> Ahg921440 jgi|Araly1|921440|scaffold_102721.1
Length=731
Score = 547 bits (296), Expect = 5e-155
Identities = 352/378 (93%), Gaps = 8/378 (2%)
Strand=Plus/Plus
Query 701 ACATTAGTATGGTTGTTTCGGTCTTAGAAGAGGAAGAAGATAGTAAAGGCATCTATGGAA 760
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 349 ACATTAGTATGGTTGTTTCGGTCTTAGAGGAGGAAGAAGATGGTAAAGGCATCTATGGAA 408
Query 761 GTAGTGCTCTGTCTCTTTCAGCTTGGTACTTAAGAGGACAAGAGAAGCGTGACTTCTGGA 820
| |||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 409 GCAGTGCTTTGTCTCTTTCCGCTTGGTACTTAAGAGGACAAGAGAAGCGTGACCTCTGGA 468
Query 821 TGATGCTAG-TGTTCTTGGTCGGCGCTCTTGTGACAAGGATGCCATGTTTATACTACAAA 879
||||||| | ||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 469 TGATGCT-GATGTTCTTGGTCGGCGCTCTTGTGACGAGGATGCCGTGTTTATACTACAAA 527
Query 880 TGCAGTGAAAGTCTGAGTGGGAATGGAGTGTTGTACACTGGTCTCTATGTAAGTTTGATT 939
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 528 TGCAGTGAAAGTCTGAGTGGGAATGGAGTGTTGTACACTGGTCTCTATGTAGGTTTGATT 587
Query 940 TGTGTTGGGAATGTCGTTAAATGGGTTTCTTGTGTTGTTTGGTACCATGATTGTAACACA 999
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 588 TGTGTTGGGAATGTGGTTAAATGGGTATCTTGTGTTGTTTGTTACCATGATTGTAACACA 647
Query 1000 AGGGTCTTGAGGAAAAAGGGTGACGTGGAGATTGGGTCAAAAGC------TTTTGCTACA 1053
| ||| |||||||| |||||||| || |||||||| |||||||| ||||||||||
Sbjct 648 AAGGTTTTGAGGAAGAAGGGTGATGTAGAGATTGGATCAAAAGCCAAGGCTTTTGCTACA 707
Query 1054 TAGAGAAATTGTTTGTGA 1071
||||||||||||||||||
Sbjct 708 TAGAGAAATTGTTTGTGA 725
Score = 481 bits (260), Expect = 5e-135
Identities = 320/349 (92%), Gaps = 4/349 (1%)
Strand=Plus/Plus
Query 24 AGAAAGAGATCAACAAATGGAGACAAAGAGCGAGGAGAAGCTAAGTGTCATCGAACTACT 83
|||||||||| ||||||||||||| |||||||| | |||||||||| |||||||||||||
Sbjct 5 AGAAAGAGATAAACAAATGGAGACGAAGAGCGACGTGAAGCTAAGTATCATCGAACTACT 64
Query 84 AAAACGAGCT-CTTAAGCTACTCTTTGGTAACATCAATCTCGCTCTCTTCCTCTTTCTT- 141
|||||||||| | |||||||||||||||||||||||||||||||||||| || |||||
Sbjct 65 AAAACGAGCTGC-GAAGCTACTCTTTGGTAACATCAATCTCGCTCTCTTCGTC-TTCTTC 122
Query 142 TGCTCTCTCCCACTGTTTTGTTTCTTGATCTTCTTCGAGCTCTCCCTCCAAACCACTGTC 201
||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 123 TGCTCCCTCCCACTGTTTTGTTTCTTGATCTTCTTCGAGCTCTCTCTCCAAACTACTGTC 182
Query 202 TCACTCGCTTCCACATACATCTCCAAACTAGTCAATTCTGAGGAGGACTTGTCGGAGAAT 261
|||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct 183 TCACTCGCTTCCACATACCTCTCCAAACTAGTCAATTCTGAGGAAGACTTATCGGAGAAT 242
Query 262 GATCTTCTTCCTTGGCTGATTCAGACAACTCTGCTCTACTTCTTTCCCTATACTATTCTT 321
|||||| |||| ||| || | |||||| |||| ||||||||||||||||| |||||| |
Sbjct 243 GATCTTATTCCATGGTTGGTGCAGACATCTCTACTCTACTTCTTTCCCTACACTATTATC 302
Query 322 GACCTCCTTACCACCACCACGATCGTTGCAGCATCATCGATTGCTTACA 370
||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 303 GACCTCCTTACCACCACCACGATCGTTGCAGCATCTTCGATTTCTTACA 351
> Ahg472644 jgi|Araly1|472644|fgenesh2_kg.1__2598__AT1G23830.1
Length=1091
Score = 252 bits (136), Expect = 5e-66
Identities = 211/246 (86%), Gaps = 10/246 (4%)
Strand=Plus/Plus
Query 26 AAAGAGATCAACAAATGGAGACAAAGAGCGAGGAGAAGCTAAGTGTCATCGAACTACTAA 85
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 1 AAAGAGATCAACAGATGGAGACCAAGAGCGAAGAGAAGCTAAGTGTCATCGAACTTCTAA 60
Query 86 AACGAGCT-CTTAAGCTACTCTTTGGTAACATCAATCTCGCT-CTCTTCCTCTTTCTTTG 143
||| |||| | ||||||||||| ||||| | ||||||| | |||||||| | || ||
Sbjct 61 AACTAGCTGC-GAAGCTACTCTTCGGTAATAGCAATCTC-TTGCTCTTCCTATGCCTCTG 118
Query 144 CTCTCTCCCACTGTTTTGTTTCTTGATCTTCTTCGAGCTCTCCCTCCAAACCACTGTCTC 203
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 119 CTCTCTCCCACTGTTTTGTTTCTTGATCTTCTTTGAGCTCTCACTCCAAACCACTGTCTC 178
Query 204 ACTCGCTTCCACA-TACATCTCCAAACTAGTCAATTCT-G-AGGAGGACTTGTCGGAGAA 260
||| ||||| || | | ||| ||||||| ||| | || | || |||||||| | |||||
Sbjct 179 TCTCACTTCC-CAATTCCTCTTCAAACTACTCACT-CTTGGAG-AGGACTTGCCAGAGAA 235
Query 261 TGATCT 266
||||||
Sbjct 236 TGATCT 241
> Ahg921441 jgi|Araly1|921441|scaffold_102722.1
Length=1108
Score = 207 bits (112), Expect = 1e-52
Identities = 383/506 (76%), Gaps = 50/506 (10%)
Strand=Plus/Plus
Query 38 AAATGGAGACAAAGAGCGAGGAGAAGCTAAGTGT-CATCGAAC-TACTAAAACGAGC-TC 94
||| ||||| |||| ||||||| | ||| || | |||| ||| |||| |||||||| |
Sbjct 14 AAA-GGAGATGAAGATCGAGGAGGATCTAGGT-TACATC-AACGTACTCAAACGAGCAAC 70
Query 95 TTAAGCTACTCTTTGGTAACATCAATCTCGCTCTCTTCCTCTTTCTTTGCTCTCTCCCAC 154
||||| || | |||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 71 -AAAGCTTCTATGGGGTAACATCAATCTCGTTCTCTTCCTCTGCCTTTGCTCTCTCCCTC 129
Query 155 TGTTTTGTTTCTTGATCTTCTTCGAGCTCTCCCTCCAAACCACTGTCTCACTCGCTTC-C 213
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 130 TCTTTTGTTTCTTGATCTTCTTCGAGCTCTCACTCCAAACCACTGTCTCACTCGCTTCTC 189
Query 214 ACATACATC-TCC-A-AACT-A------G---T--C-A--A--TTC-T-GAGGAG--GAC 249
| |||| || | | | |||| | | | | | | ||| | ||| | | |
Sbjct 190 A-ATACCTCGTTCGACAACTCAATAATTGGAATTACTACTACGTTCCTCGAGTTGCTGCC 248
Query 250 TTGTCGGAGAATGATCTTCTTCC-TTGGCTGATTCAGACAACTCTGCTCTACTTCTTTCC 308
|||||||||||| || ||||| ||| || || |||||| ||| |||||||| || ||
Sbjct 249 TTGTCGGAGAAT---CTGCTTCCATTG-CTTATCCAGACATTTCTACTCTACTTGTT-CC 303
Query 309 C-TATA-CTATTCTTGACCTCCTTACCACCACCACGATCGT-TGCAGCATCATCGATTGC 365
| || | | |||| |||||||| |||||||||| || || | | ||||| | |||||
Sbjct 304 CGTACAGCC-TTCTAGACCTCCTCACCACCACCATAATGGTCTCC-GCATCTTGGATTG- 360
Query 366 TT-ACACATCTGAGGAAGAGCCGTTAGGGTT-GCTTTATTTGGTAGGGAGATCTTTCA-A 422
|| |||| || | ||| || |||||| |||| | | ||| ||| ||||| | | | |
Sbjct 361 TTCACACGTCCGGGGAGGAACCGTTAAGGTTCGGTCAATT-GGTTCGGAGAACCGT-AGA 418
Query 423 GCTATGTCAGAACAAAGTAGGAGGTTGTCTGATCACATCTCTCTATGTCCTTCTCTTGTC 482
| ||||||| |||| | | | ||||||||||||||| ||||| || ||||||| ||||
Sbjct 419 GATATGTCAAAACAGACTTGAAGGTTGTCTGATCACCTCTCTGTACATCCTTCTGATGTC 478
Query 483 GACCTCTGTTTTCCTCGGTTTGTTCT 508
||| ||||| || | ||||| ||||
Sbjct 479 AACCCCTGTTCTCTTTGGTTTCTTCT 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40219677435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5