BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23850.1
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921441 jgi|Araly1|921441|scaffold_102722.1 1489 0.0
> Ahg921441 jgi|Araly1|921441|scaffold_102722.1
Length=1108
Score = 1489 bits (806), Expect = 0.0
Identities = 1014/1112 (91%), Gaps = 23/1112 (2%)
Strand=Plus/Plus
Query 177 AACTG-TGAAAGAAGATGAAGATTGAGGAGGATCTAGGTTTCATCAACATACTCAAACGA 235
||||| | |||| |||||||||| |||||||||||||||| ||||||| |||||||||||
Sbjct 7 AACTGCT-AAAGGAGATGAAGATCGAGGAGGATCTAGGTTACATCAACGTACTCAAACGA 65
Query 236 GCAACAAAGCTTCTATGTGGTAACATCAAtcttgttctcttcctcttcctttgctctctc 295
||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||
Sbjct 66 GCAACAAAGCTTCTATGGGGTAACATCAATCTCGTTCTCTTCCTCTGCCTTTGCTCTCTC 125
Query 296 cccctcttttgtttcttgatcttcttcgagctttcACTCCAAACCACTGTCTCACTCGCT 355
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 126 CCTCTCTTTTGTTTCTTGATCTTCTTCGAGCTCTCACTCCAAACCACTGTCTCACTCGCT 185
Query 356 TCTCAATACCTCGTTCGACAACTCACTAATTGGGATTACTACTACGTTCCTCAAGATGCT 415
||||||||||||||||||||||||| ||||||| |||||||||||||||||| || ||||
Sbjct 186 TCTCAATACCTCGTTCGACAACTCAATAATTGGAATTACTACTACGTTCCTCGAGTTGCT 245
Query 416 TCCGTCTTGGAGAATCTGATTCCATTGCTTATCCAGACATTTCTACTCTACTTGTTCCCG 475
|| | | |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GCCTTGTCGGAGAATCTGCTTCCATTGCTTATCCAGACATTTCTACTCTACTTGTTCCCG 305
Query 476 TACGGCC-TCATAGACCTCTTCACCACCACCACAATAGTCTCTGCATCTTGGACTGTTCA 534
||| ||| || |||||||| |||||||||||| ||| ||||| |||||||||| ||||||
Sbjct 306 TACAGCCTTC-TAGACCTCCTCACCACCACCATAATGGTCTCCGCATCTTGGATTGTTCA 364
Query 535 CACGT-CGGAGGAGGAACCGTTAAGGTTCGGTCAATTGGTTCGGAGAACGGTAGAGATAT 593
||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 365 CACGTCCGG-GGAGGAACCGTTAAGGTTCGGTCAATTGGTTCGGAGAACCGTAGAGATAT 423
Query 594 GTCAAAACAGACTTGAAGGTTGTCTGATCACCTCTCTGTACGTCCTTCTCTTGTCAACCC 653
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 424 GTCAAAACAGACTTGAAGGTTGTCTGATCACCTCTCTGTACATCCTTCTGATGTCAACCC 483
Query 654 CTGTTTTCTTTGGCTTCTTATTTGTAGCAACGAACTATTTCCACATCATTTCTCTGACCG 713
||||| ||||||| ||||| ||||||||||||||||||||| ||||||||||||||| ||
Sbjct 484 CTGTTCTCTTTGGTTTCTTCTTTGTAGCAACGAACTATTTCTACATCATTTCTCTGATCG 543
Query 714 GATCAGGCGAAAACTCATACTACTATTCTAT-AAACATTGAAGAAGAT-GCCGAAGGCTA 771
||| ||| || ||||| ||||||||| ||| || | | || |||||| | || ||| ||
Sbjct 544 GATTAGGAGACTACTCACACTACTATTATATCAATC-TGGATGAAGATAG-CGGAGGTTA 601
Query 772 TTACAGAAGCAGCAG-TGTCAACAG-TCCGGTAAAGATGTTGTTTGATGCGGTTTTAGCT 829
||||||||||||| | | || || | |||||||| ||||||||||||||| ||| | |||
Sbjct 602 TTACAGAAGCAGCCGCT-TCGAC-GATCCGGTAAGGATGTTGTTTGATGCAGTTATGGCT 659
Query 830 ATGTTTCACGGTGCTATCTTTCTCGGTTTACTGGCGATGTTCAGCAAGTGGAGTGCGGGA 889
|||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 660 ATGTTTCATGGTGCTATCTTTCTCGTTTTGCTGGCGATGTTCAGCAAGTGGAGTGCGGGA 719
Query 890 TGGAACATGGGTTTGGTTGTTTCGGTGTTAGAAG-AG--GAAGAA-AATGGTCAAAGCAT 945
|||||||||||||||||| | ||||||||||||| || ||||| || | ||||| |||
Sbjct 720 TGGAACATGGGTTTGGTTATCTCGGTGTTAGAAGAAGATCAAGAAGAA-GATCAAAACAT 778
Query 946 ATATGGAACCGATGCCTTGAC-ACTGTCTTCTAACTATGGAAAAGGACATGAGAAGCGTG 1004
||||||||||||||| |||| | | ||| |||| ||||||||||||||||||||||| |
Sbjct 779 CTATGGAACCGATGCCCTGACGA-TCTCTGCTAAATATGGAAAAGGACATGAGAAGCGCG 837
Query 1005 GTCTCCAAGTGATGCTGGTGTTCTTGGTCTTCGCTATTGCGATGAGGATGCCATGTTTTT 1064
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 838 GTCTCCAAGTGATGCTGGTGTTCTTGGTCTTCGTTATTGCGATGAGGATGCCGTGTTTTT 897
Query 1065 GTTTCAAATGCACGGAGAGTTCCAATGGAAACAGAGTGTTGTACACGAGTTTCTATGTGG 1124
| ||||||||||| |||||||| |||||||| |||||||||||||||||| |||||||||
Sbjct 898 GCTTCAAATGCACTGAGAGTTCGAATGGAAATAGAGTGTTGTACACGAGTCTCTATGTGG 957
Query 1125 GTTTGATCTGTGTTGGGAATATGATCAAATGGGTGGCTTGTGTAGTGTTTTATGAAGATT 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GTTTGATCTGTGTTGGGAATATGATCAAATGGGTGGCTTGTGTAGTGTTTTATGAAGATT 1017
Query 1185 GTAGAACTA-GCGTTTTGGAGAAGAAAGGTGATGTGGAGATTGGATCAAAAGGTAAGACT 1243
||||||| | | |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1018 GTAGAACCAAG-GTTTTGGAGAAGAAAGGTGATGTGGAGATTGGATCAAAAGCTAAGACT 1076
Query 1244 TTTGTTGCATAGATAAATTGTCTTAGATCAAA 1275
|||| || ||||||||||||||||||||||||
Sbjct 1077 TTTGCTGTATAGATAAATTGTCTTAGATCAAA 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56030750395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5