BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23860.1
Length=1378
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472646 jgi|Araly1|472646|fgenesh2_kg.1__2600__AT1G23860.3 761 0.0
> Ahg472646 jgi|Araly1|472646|fgenesh2_kg.1__2600__AT1G23860.3
Length=1172
Score = 761 bits (412), Expect = 0.0
Identities = 532/587 (91%), Gaps = 20/587 (3%)
Strand=Plus/Plus
Query 788 TGTTCGAGTTTTATTAGACAATTGGATTTGGTGAGTTCTCCTTCATGCTGTTTTCCAACA 847
|||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 592 TGTTCGTGTTTTATTAGACAATTGGATTTGGTGAATTCTCCTTCAAGCTGTTTTCCAACA 651
Query 848 GCCGTCTTGACTTATTCTCTATAACACGCACTGGCCTGCTGTCTTCACACAGCGTCCTTG 907
|||||||||||||||||||| |||||||| ||||| |||||||||||| |||||| ||||
Sbjct 652 GCCGTCTTGACTTATTCTCTTTAACACGCGCTGGCTTGCTGTCTTCACTCAGCGTGCTTG 711
Query 908 AACCCCTACACTTGAGGTCGTTCTTTCGTATCCAT--AA-ATGTTTTGTCTCTTGTTGAA 964
||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct 712 AACCCCTACACTTGAGGTCGTTCTTTCGTATCCATAAAATATGTTTTGTGTCTTGTTGAA 771
Query 965 TGCACTTTCCTTAT--TAT-ATA-----GACATATCTAAAAAGCTCAACTGTTTCCACTC 1016
||||||| |||||| ||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 772 TGCACTTACCTTATCATATAATATGTGTGACATATCTAAAAGGCTCAACTGTTTCCACTC 831
Query 1017 TTTTTCCCTTGTGAGGTATGATTTATCGGGGATCTCTTGGCAGCA-CAGCTGCATCTTAC 1075
||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct 832 TTTTTCCCTTGTGAGGTATGATTTATCGGGGATCTCTCCGCAGCTGC-GCTGCATCTTAC 890
Query 1076 TCTCCCCACAACTTAGTTTTA-TCATGAATCTGCATCCTCAACTCGACCAACATCAGCTA 1134
||||||| |||||||| ||| | ||||||||||||| |||||||||||| |||||||||
Sbjct 891 TCTCCCCTCAACTTAGCTTTGCT-ATGAATCTGCATCGTCAACTCGACCATCATCAGCTA 949
Query 1135 GAATTTGCTTGTTACATTGTGTGACTTTTAGATTGCCCTGCTCTTTACTCACCACTCCTA 1194
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 950 GA-TTTGCTTGTTACATTGTGTGACTTTTAGATTGCCCTGCTCTTTACTCACAACTCTTA 1008
Query 1195 CCCCAAGTCTGCAA-CCAAGCTTCTATTGAGAAAGACGAATCTGTTTCTTCACCCCGTCC 1253
|||||| ||||||| ||||||||||| ||||| ||| || |||||||||||||||| ||
Sbjct 1009 CCCCAA-TCTGCAAACCAAGCTTCTAAGGAGAAGGACAAAGCTGTTTCTTCACCCCGCCC 1067
Query 1254 TCTTCCTAGCTCTCGGCTGCTATATCACCACTTGGTTTCTCTACTCACTTTTGTTTTTCG 1313
||| ||| |||||| |||||| ||||||| ||||| |||||| |||||||||||||| ||
Sbjct 1068 TCTCCCTCGCTCTCAGCTGCTTTATCACCCCTTGGGTTCTCTGCTCACTTTTGTTTT-CG 1126
Query 1314 GTCAACTTTGTTACACATCTGTTGGTGGATCACACACTTACATTAAA 1360
|||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1127 GTCAACTTTGC-ACACATCTGTTGGTGGATCACACACTTACATTAAA 1172
Score = 586 bits (317), Expect = 1e-166
Identities = 368/393 (94%), Gaps = 2/393 (1%)
Strand=Plus/Plus
Query 80 ATGACGAGGGTTTATGTCGGGAATTTGGACCCACGCGTCACCGAAAGAGAACTCGAAGAC 139
|||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1 ATGACGAGGGTTTACGTCGGGAATTTGGACCCAAGGGTCACCGAAAGAGAACTCGAAGAC 60
Query 140 GAATTCA-AGGCCTTCGGTGTTCTTCGCAATGTCTGGGTAGCTCGTAGACCTCCTGGCTA 198
||||||| | | ||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 61 GAATTCAGAATC-TTCGGCGTTCTTCGCAATGTTTGGGTAGCTCGTAGGCCTCCTGGCTA 119
Query 199 CGCATTCCTCGAGTTCGATGACGAAAGAGATGCTTTGGATGCAATCAGCGCATTGGATCG 258
||| |||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 120 CGCTTTCCTCGAGTTCGATGACGAGAGAGATGCTTTGGATGCAATTAGGGCATTGGATCG 179
Query 259 AAAGAATGGGTGGCGTGTGGAGCTTTCTCATAAAGATAAAGGAGGTCGTGGAGGTGGTGG 318
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 180 AAAGAATGGGTGGCGTGTGGAGCTTTCTCATAAAGATAAAGGTGGTCGTGGAGGCGGTGG 239
Query 319 TGGTCGTCGTGGAGGTATTGAGGATTCCAAGTGCTATGAGTGTGGTGAGCTTGGACATTT 378
|||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 240 TGGTCGTCGTGGCGGTATTGAGGATTCTAAGTGCTATGAGTGCGGTGAACTTGGACATTT 299
Query 379 TGCTCGCGAGTGTCGCCGTGGTCGAGGCTCTGTGAGGCGTAGAAGCCCTAGTCCCCGTCG 438
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 300 TGCTCGGGAGTGTCGCCGTGGTCGAGGCTCTGCGAGGCGTAGAAGCCCTAGTCCTCGTCG 359
Query 439 TCGTAGGAGTCCAGATTATGGGTATGCTCGCAG 471
|||||||||||||||||||||||||| |||||
Sbjct 360 TCGTAGGAGTCCAGATTATGGGTATGGACGCAG 392
Score = 209 bits (113), Expect = 4e-53
Identities = 148/163 (91%), Gaps = 10/163 (6%)
Strand=Plus/Plus
Query 542 AGCTACAGCAGATCCCCTCCTTATCGTGGTTCACGCCGTGATTCTCCTCGCCGCAGAGAC 601
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 391 AGCTACAGCAGATCCCCTCCTTATCGTGGTTCGCGCCGGGATTCTCCTCGCCGCAGAGAC 450
Query 602 TCGCCCTATGGTCGACGTTCGCCATATGCCAATGGG---G-TGTGAAACTGGACCCTGAA 657
|| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 451 TCACCCTATGGTCGACGTTCGCCATATGCCAATGGGTAAGGTGTGAAACTGGACCCTGAA 510
Query 658 GAGAAAGAAGCTATTA---CTA--A-GCTATGATGCTATATCT 694
|||||||||| ||||| || | |||||||||||||||||
Sbjct 511 GAGAAAGAAGATATTAAAACTTCTATGCTATGATGCTATATCT 553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51580306701
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5