BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G23860.1 Length=1378 Score E Sequences producing significant alignments: (Bits) Value Ahg472646 jgi|Araly1|472646|fgenesh2_kg.1__2600__AT1G23860.3 761 0.0 > Ahg472646 jgi|Araly1|472646|fgenesh2_kg.1__2600__AT1G23860.3 Length=1172 Score = 761 bits (412), Expect = 0.0 Identities = 532/587 (91%), Gaps = 20/587 (3%) Strand=Plus/Plus Query 788 TGTTCGAGTTTTATTAGACAATTGGATTTGGTGAGTTCTCCTTCATGCTGTTTTCCAACA 847 |||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct 592 TGTTCGTGTTTTATTAGACAATTGGATTTGGTGAATTCTCCTTCAAGCTGTTTTCCAACA 651 Query 848 GCCGTCTTGACTTATTCTCTATAACACGCACTGGCCTGCTGTCTTCACACAGCGTCCTTG 907 |||||||||||||||||||| |||||||| ||||| |||||||||||| |||||| |||| Sbjct 652 GCCGTCTTGACTTATTCTCTTTAACACGCGCTGGCTTGCTGTCTTCACTCAGCGTGCTTG 711 Query 908 AACCCCTACACTTGAGGTCGTTCTTTCGTATCCAT--AA-ATGTTTTGTCTCTTGTTGAA 964 ||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||| Sbjct 712 AACCCCTACACTTGAGGTCGTTCTTTCGTATCCATAAAATATGTTTTGTGTCTTGTTGAA 771 Query 965 TGCACTTTCCTTAT--TAT-ATA-----GACATATCTAAAAAGCTCAACTGTTTCCACTC 1016 ||||||| |||||| ||| ||| ||||||||||||| |||||||||||||||||| Sbjct 772 TGCACTTACCTTATCATATAATATGTGTGACATATCTAAAAGGCTCAACTGTTTCCACTC 831 Query 1017 TTTTTCCCTTGTGAGGTATGATTTATCGGGGATCTCTTGGCAGCA-CAGCTGCATCTTAC 1075 ||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| Sbjct 832 TTTTTCCCTTGTGAGGTATGATTTATCGGGGATCTCTCCGCAGCTGC-GCTGCATCTTAC 890 Query 1076 TCTCCCCACAACTTAGTTTTA-TCATGAATCTGCATCCTCAACTCGACCAACATCAGCTA 1134 ||||||| |||||||| ||| | ||||||||||||| |||||||||||| ||||||||| Sbjct 891 TCTCCCCTCAACTTAGCTTTGCT-ATGAATCTGCATCGTCAACTCGACCATCATCAGCTA 949 Query 1135 GAATTTGCTTGTTACATTGTGTGACTTTTAGATTGCCCTGCTCTTTACTCACCACTCCTA 1194 || ||||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 950 GA-TTTGCTTGTTACATTGTGTGACTTTTAGATTGCCCTGCTCTTTACTCACAACTCTTA 1008 Query 1195 CCCCAAGTCTGCAA-CCAAGCTTCTATTGAGAAAGACGAATCTGTTTCTTCACCCCGTCC 1253 |||||| ||||||| ||||||||||| ||||| ||| || |||||||||||||||| || Sbjct 1009 CCCCAA-TCTGCAAACCAAGCTTCTAAGGAGAAGGACAAAGCTGTTTCTTCACCCCGCCC 1067 Query 1254 TCTTCCTAGCTCTCGGCTGCTATATCACCACTTGGTTTCTCTACTCACTTTTGTTTTTCG 1313 ||| ||| |||||| |||||| ||||||| ||||| |||||| |||||||||||||| || Sbjct 1068 TCTCCCTCGCTCTCAGCTGCTTTATCACCCCTTGGGTTCTCTGCTCACTTTTGTTTT-CG 1126 Query 1314 GTCAACTTTGTTACACATCTGTTGGTGGATCACACACTTACATTAAA 1360 |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1127 GTCAACTTTGC-ACACATCTGTTGGTGGATCACACACTTACATTAAA 1172 Score = 586 bits (317), Expect = 1e-166 Identities = 368/393 (94%), Gaps = 2/393 (1%) Strand=Plus/Plus Query 80 ATGACGAGGGTTTATGTCGGGAATTTGGACCCACGCGTCACCGAAAGAGAACTCGAAGAC 139 |||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| Sbjct 1 ATGACGAGGGTTTACGTCGGGAATTTGGACCCAAGGGTCACCGAAAGAGAACTCGAAGAC 60 Query 140 GAATTCA-AGGCCTTCGGTGTTCTTCGCAATGTCTGGGTAGCTCGTAGACCTCCTGGCTA 198 ||||||| | | ||||| |||||||||||||| |||||||||||||| ||||||||||| Sbjct 61 GAATTCAGAATC-TTCGGCGTTCTTCGCAATGTTTGGGTAGCTCGTAGGCCTCCTGGCTA 119 Query 199 CGCATTCCTCGAGTTCGATGACGAAAGAGATGCTTTGGATGCAATCAGCGCATTGGATCG 258 ||| |||||||||||||||||||| |||||||||||||||||||| || ||||||||||| Sbjct 120 CGCTTTCCTCGAGTTCGATGACGAGAGAGATGCTTTGGATGCAATTAGGGCATTGGATCG 179 Query 259 AAAGAATGGGTGGCGTGTGGAGCTTTCTCATAAAGATAAAGGAGGTCGTGGAGGTGGTGG 318 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 180 AAAGAATGGGTGGCGTGTGGAGCTTTCTCATAAAGATAAAGGTGGTCGTGGAGGCGGTGG 239 Query 319 TGGTCGTCGTGGAGGTATTGAGGATTCCAAGTGCTATGAGTGTGGTGAGCTTGGACATTT 378 |||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| Sbjct 240 TGGTCGTCGTGGCGGTATTGAGGATTCTAAGTGCTATGAGTGCGGTGAACTTGGACATTT 299 Query 379 TGCTCGCGAGTGTCGCCGTGGTCGAGGCTCTGTGAGGCGTAGAAGCCCTAGTCCCCGTCG 438 |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 300 TGCTCGGGAGTGTCGCCGTGGTCGAGGCTCTGCGAGGCGTAGAAGCCCTAGTCCTCGTCG 359 Query 439 TCGTAGGAGTCCAGATTATGGGTATGCTCGCAG 471 |||||||||||||||||||||||||| ||||| Sbjct 360 TCGTAGGAGTCCAGATTATGGGTATGGACGCAG 392 Score = 209 bits (113), Expect = 4e-53 Identities = 148/163 (91%), Gaps = 10/163 (6%) Strand=Plus/Plus Query 542 AGCTACAGCAGATCCCCTCCTTATCGTGGTTCACGCCGTGATTCTCCTCGCCGCAGAGAC 601 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 391 AGCTACAGCAGATCCCCTCCTTATCGTGGTTCGCGCCGGGATTCTCCTCGCCGCAGAGAC 450 Query 602 TCGCCCTATGGTCGACGTTCGCCATATGCCAATGGG---G-TGTGAAACTGGACCCTGAA 657 || ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 451 TCACCCTATGGTCGACGTTCGCCATATGCCAATGGGTAAGGTGTGAAACTGGACCCTGAA 510 Query 658 GAGAAAGAAGCTATTA---CTA--A-GCTATGATGCTATATCT 694 |||||||||| ||||| || | ||||||||||||||||| Sbjct 511 GAGAAAGAAGATATTAAAACTTCTATGCTATGATGCTATATCT 553 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51580306701 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5