BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23870.1
Length=2973
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921443 jgi|Araly1|921443|scaffold_102724.1 4364 0.0
Ahg926342 jgi|Araly1|926342|scaffold_201903.1 2106 0.0
> Ahg921443 jgi|Araly1|921443|scaffold_102724.1
Length=2644
Score = 4364 bits (2363), Expect = 0.0
Identities = 2544/2634 (97%), Gaps = 1/2634 (0%)
Strand=Plus/Plus
Query 200 CTTTGGCTTGATTCTTCTCTATGGTGTCAAGATCTTGTGCAAATTTTCTAGATTTAGCAT 259
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 CTTTGGCTTGCTTC-TCTCTATGGTGTCAAGATCTTGTGCAAATTTTCTAGATTTAGCAT 60
Query 260 CTTGGGACTTATTGGACTTTCCTCAAACTCAAAGAGCTCTTCCTCGTGTCATGACTGTTC 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTGGGACTTATTGGACTTTCCTCAAACTCAAAGAGCTCTTCCTCGTGTCATGACTGTTC 120
Query 320 CTGGTATCATCTCTGAGTTGGATGGAGGCTACAGTGATGGATCCTCTGATGTTAATTCCT 379
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 CTGGTATCATCTCTGAGTTGGATGGAGGCTACAGTGATGGATCCTCTGATGTTAATTCAT 180
Query 380 CAAACAGCTCCCGTGAGCGGAAGATTATAGTGGCTAATATGTTACCATTACAAGCTAAGA 439
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAAGCAGCTCCCGTGAGCGGAAGATTATAGTGGCTAATATGTTACCATTACAAGCTAAGA 240
Query 440 GAGATACAGAAACTGGACAATGGTGTTTTAGTTGGGATGAAGATTCTCTTCTCTTGCAAC 499
|||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGATACAGAGAGTGGTCAATGGTGTTTTAGTTGGGATGAAGATTCTCTTCTCTTGCAAC 300
Query 500 TCAGAGATGGGTTTTCTTCGGATACAGAGTTTGTTTATATAGGATCACTTAATGCTGATA 559
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 301 TCAGAGATGGGTTTTCTTCGGATACGGAGTTTGTTTATATAGGATCACTTAATGCTGATA 360
Query 560 TTGGTATTAGTGAACAAGAAGAAGTTTCTCATAAGCTTTTGTTGGATTTCAATTGTGTTC 619
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGGTACGAGTGAACAAGAAGAAGTTTCTCATAAGCTTTTGTTGGATTTCAATTGTGTTC 420
Query 620 CTACGTTTTTACCCAAGGAGATGCAAGAGAAGTTCTATCTTGGTTTCTGTAAACATCATT 679
| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 421 CCACGTTTTTACCCAAGGAGATGCAAGAAAAGTTCTATCTTGGTTTCTGTAAACACCATT 480
Query 680 TGTGGCCGCTATTTCACTATATGCTTCCTATGTTCCCTGACCATGGTGATCGTTTTGACC 739
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 481 TGTGGCCGCTATTTCACTATATGCTTCCTATGTTCCCAGACCACGGTGATCGTTTTGACC 540
Query 740 GGCGTCTTTGGCAAGCGTATGTCTCTGCAAACAAGATATTTTCAGATAGGGTGATGGAAG 799
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 541 GGCGTCTTTGGCAAGCGTATGTTTCTGCAAACAAGATATTTTCAGATAGGGTGATGGAAG 600
Query 800 TTATCAACCCTGAGGAAGATTATGTTTGGATTCATGATTATCATCTGATGGTTCTTCCCA 859
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 601 TCATCAACCCTGAGGAAGATTATGTTTGGATTCACGATTATCATCTGATGGTTCTTCCCA 660
Query 860 CATTCTTGAGGAAACGGTTTAACAGGATCAAGCTTGGATTTTTCCTTCACAGTCCATTTC 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CATTCTTGAGGAAACGGTTTAACAGGATCAAGCTTGGATTTTTCCTTCACAGTCCATTTC 720
Query 920 CATCATCAGAAATTTACCGTACTTTGCCAGTCCGGGATGATCTTTTGAGAGGATTGTTGA 979
|||| |||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 721 CATCGTCAGAAATCTACCGCACTTTGCCAGTGAGGGATGATCTTCTGAGAGGATTGTTGA 780
Query 980 ACTGTGATCTCATTGGCTTCCACACATTTGATTATGCACGCCATTTTTTGTCATGCTGCA 1039
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACTGTGATCTCATTGGTTTCCACACATTTGATTATGCACGCCATTTTTTGTCATGCTGCA 840
Query 1040 GTAGAATGCTTGGGCTTGATTATGAATCTAAGCGTGGGCACATCGGGCTTGATTACTTTG 1099
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 841 GTAGAATGCTTGGCCTTGATTATGAATCTAAGCGTGGGCACATTGGGCTTGATTACTTTG 900
Query 1100 GTCGAACGGTGTTTATTAAGATCCTTCCTGTTGGCATCCATATGGGGAGGCTGGAATCGG 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GTCGAACGGTGTTTATTAAGATCCTTCCTGTTGGCATCCATATGGGGAGGCTGGAATCGG 960
Query 1160 TTTTGAATCTTCCGTCGACTGCAGCGAAAATGAAAGAGATACAAGAACAGTTTAAGGGGA 1219
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 961 TTTTGAATCTTCCGTCGACTGCAGCGAAAATGAAAGAGATACAAGAACAGTTCAAGGGGA 1020
Query 1220 AAAAGTTGATTCTTGGTGTTGACGACATGGACATCTTTAAAGGCATAAGCCTCAAACTTA 1279
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AAAAGTTGATTCTCGGTGTCGACGACATGGACATCTTTAAAGGCATAAGCCTCAAACTTA 1080
Query 1280 TAGCCATGGAACGTCTCTTTGAGACATATTGGCATATGCGAGGAAAACTTGTCCTGATTC 1339
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1081 TAGCCATGGAACGTCTCTTTGAGACATATTGGCATATGCGAGGAAAACTTATCCTGATTC 1140
Query 1340 AGATAGTGAACCCAGCACGGGCCACGGGTAAGGATGTGGAAGAAGCAAAGAAGGAGACAT 1399
|||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1141 AGATAGTGAACCCAGCTCGGGCCACAGGTAAGGATGTGGAAGAAGCAAAGAGGGAGACAT 1200
Query 1400 ATTCAACTGCAAAAAGGATCAATGAGCGCTATGGTTCTGCTGGTTATCAGCCAGTGATCT 1459
||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1201 ATTCAACTGTAAAAAGGATTAACGAGCGCTATGGTTCTGCTGGTTATCAGCCAGTGATCT 1260
Query 1460 TGATTGATCGTCTTGTTCCTCGTTACGAGAAGACTGCTTATTATGCTATGGCAGACTGCT 1519
||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||
Sbjct 1261 TGATTGATCGTCTTGTTCCACGTTATGAGAAGACTGCCTATTATGCAATGGCAGACTGCT 1320
Query 1520 GCCTGGTGAATGCAGTAAGAGACGGCATGAACTTAGTTCCATATAAATATATCATTTGCA 1579
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1321 GCCTGGTGAATGCAGTAAGAGATGGCATGAACTTAGTTCCATATAAATATATCATTTGCA 1380
Query 1580 GGCAAGGGACCCCAGGAATGGATAAGGCCATGGGGATTAGCCATGACTCAGCCCGGACGA 1639
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1381 GGCAAGGGACCCCAGGAATGGATAAGGCCATGGGCATTAGCCATGACTCACCCCGGACGA 1440
Query 1640 GCATGCTTGTTGTCTCTGAGTTTATCGGCTGCTCGCCTTCTTTGAGTGGTGCGATCAGGG 1699
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1441 GCATGCTTGTCGTCTCTGAGTTTATCGGCTGCTCGCCTTCATTGAGTGGTGCGATCAGGG 1500
Query 1700 TGAACCCATGGGATGTAGATGCTGTTGCAGAAGCGGTAAACTTAGCCCTCACTATGGGTG 1759
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1501 TGAACCCATGGGATGTAGATGCTGTTGCAGAAGCGGTAAACTTAGCCCTCACCATGGGTG 1560
Query 1760 AGACTGAAAAGCGATTAAGGCACGAGAAACACTATCACTATGTGAGTACTCATGATGTGG 1819
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1561 AAACTGAAAAGCGATTAAGGCACGAGAAACACTATCACTATGTCAGTACTCATGATGTGG 1620
Query 1820 GTTACTGGGCAAAGAGCTTTATGCAGGATCTTGAGAGGGCATGCCGGGAGCATTATAATA 1879
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1621 GTTACTGGGCAAAGAGCTTTATGCAGGATCTGGAGAGGGCATGCCGGGAACATTATAATA 1680
Query 1880 AACGTTGTTGGGGTATTGGTTTTGGCTTGAGTTTCAGAGTTCTGTCACTGTCTCCGAGTT 1939
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1681 AACGTTGTTGGGGTATTGGTTTTGGCTTGAGTTTCAGAGTTTTGTCACTCTCTCCGAGTT 1740
Query 1940 TTAGGAAGCTATCTATCGATCACATTGTCTCCACGTATAGAAATACACAGAGAAGGGCAA 1999
||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct 1741 TTAGGAAGCTATCTATCGATCACATTGTCTCGACGTACAGAACTACACAGAGAAGGGCAA 1800
Query 2000 TATTTTTGGACTATGATGGCACTCTCGTTCCTGAAAGCTCCATCATCAAAACCCCTAATG 2059
|||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1801 TATTTTTGGATTATGACGGCACTCTCGTTCCTGAGAGCTCCATTATCAAAACCCCTAATG 1860
Query 2060 CCGAAGTCCTGTCTGTTCTGAAATCTCTGTGTGGAGATCCTAAAAACACTGTGTTTGTTG 2119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1861 CTGAAGTCCTGTCTGTTCTGAAATCTCTGTGTGGAGATCCTAAAAACACTGTGTTTGTCG 1920
Query 2120 TCAGTGGAAGAGGATGGGAGTCTCTGAGCGACTGGCTATCTCCATGTGAAAATCTTGGAA 2179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 TCAGTGGAAGAGGATGGGAGTCTCTGAGCGACTGGCTATCTCCATGTGAAAATCTTGGAA 1980
Query 2180 TCGCAGCTGAACACGGATACTTCATAAGGTGGAGTAGCAAGAAAGAATGGGAGACTTGTT 2239
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1981 TCGCAGCTGAACACGGATACTTCATAAGGTGGAGTAGCAAGAGAGAGTGGGAGACTTGTT 2040
Query 2240 ATTCGTCGGCTGAGGCGGAATGGAAGACGATGGTAGAACCGGTAATGAGATCATACATGG 2299
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041 ACTCATCGGCTGAGGCGGAATGGAAGACGATGGTAGAACCGGTAATGAGATCATACATGG 2100
Query 2300 ACGCAACCGATGGTTCTACTATAGAGTACAAAGAGAGTGCTTTGGTTTGGCATCATCAAG 2359
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2101 ACGCAACGGATGGTTCTACTATAGAGTTCAAAGAGAGTGCTTTGGTTTGGCATCATCAAG 2160
Query 2360 ACGCAGATCCAGACTTTGGAGCCTGTCAAGCAAAAGAGCTTCTAGATCATCTAGAGAGTG 2419
| || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 2161 AAGCGGATCCAGACTTTGGAGCCTGTCAAGCAAAGGAGCTTCTGGATCATCTAGAGAGTG 2220
Query 2420 TACTCGCAAATGAGCCTGTAGTCGTCAAGAGAGGCCAACACATTGTAGAGGTCAAACCAC 2479
||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 2221 TACTCGCAAATGAGCCTGTTGTCGTCAAGAGAGGTCAACACATCGTAGAGGTCAAACCAC 2280
Query 2480 AGGGAGTAAGCAAAGGTCTAGCAGTGGAAAAGGTGATACACCAAATGGTAGAGGATGGAA 2539
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 2281 AGGGAGTAAGCAAAGGTCTAGCCGTGGAAAAGGTGATACACCGAATGGTAGAGGATGGAA 2340
Query 2540 ACCCACCGGACATGGTGATGTGTATAGGAGATGACAGATCAGACGAAGACATGTTTGAGA 2599
||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2341 ACCCACCAGACATGGTAATGTGTATAGGAGATGACAGATCAGACGAGGACATGTTTGAGA 2400
Query 2600 GCATATTGAGCACAGTGACAAACCCGGACCTCCCAATGCCACCTGAGATCTTTGCCTGCA 2659
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 2401 GCATATTGAGCACAGTGACAAACCCGGACCTCCCAATGCCACCAGAGATCTTTGCTTGCA 2460
Query 2660 CGGTGGGAAGAAAACCAAGCAAAGCCAAATACTTCTTAGACGATGTCTCTGATGTATTAA 2719
|||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |
Sbjct 2461 CGGTGGGAAGAAAACCAAGCAAAGCCAAGTACTTCTTAGATGATGTCTCCGATGTATTGA 2520
Query 2720 AGCTCCTAGGAGGATTAGCTGCTGCAACGAGCAGCTCGAAGCCAGAGTATCAACAACAAT 2779
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 2521 AGCTCCTAGGAGGATTAGCTGCTGCATCGAGCAGCTCGAAGCCAGAGGATCAACAACAAT 2580
Query 2780 CCTCCTCATTGCACACGCAAGTGGCGTTTGAGAGCATCATATGATAACATAAAA 2833
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2581 CCTCCTCATTGCACACGCAAGTGGCGTTTGAGAGCATCATCTGATAACAGAAAA 2634
> Ahg926342 jgi|Araly1|926342|scaffold_201903.1
Length=2612
Score = 2106 bits (1140), Expect = 0.0
Identities = 2094/2549 (82%), Gaps = 87/2549 (3%)
Strand=Plus/Plus
Query 220 ATGGTGTCAAGATCTTGTGCAAATTTTCTAGATTTAGCATCTTGGGA-CTTATTGGACTT 278
|||||||||||||||||||| ||||||||||| || |||||||||| ||| || || ||
Sbjct 21 ATGGTGTCAAGATCTTGTGCTAATTTTCTAGACATATCATCTTGGGACCTT-TTAGATTT 79
Query 279 TCCTCAAACTCAAAGAGCTCTTCCTCGTGTCATGACTGTTCCTGGTATCATCTCTGA-GT 337
||||||||||| |||| ||||||| || ||||||||||| ||||| |||||| | || |
Sbjct 80 TCCTCAAACTCCAAGAACTCTTCCACGCGTCATGACTGTCCCTGGAATCATCACCGACG- 138
Query 338 TGGATGGAGGCTACAGTGATGGATCCTCTGATGTTAA--T--TCCTCAAACAGCTCCCGT 393
| || ||||| | | | || | |||| || | ||| | ||||| |||| |||
Sbjct 139 TAGACGGAGG--AGA-T-AT--AACCTCCGAAG-TAACTTCATCCTCCGGTGGCTCACGT 191
Query 394 GAGCGGAAGATTATAGTGGCTAATATGTTACCATTACAAGCTAAGAGAGATACAGAAACT 453
||| ||||||| || || ||||||||||||||| | ||| |||| |||||||||||||||
Sbjct 192 GAGAGGAAGATCATTGTTGCTAATATGTTACCACTCCAATCTAAAAGAGATACAGAAACT 251
Query 454 GG-ACAATGGTGTTTT-AGTTGGGATGAAGATTCTCTTCTCTTGCAACTCAGAGATGGGT 511
|| | ||||||||||| | |||||| ||||| ||||| | || ||||| ||||||||||
Sbjct 252 GGTA-AATGGTGTTTTCA-TTGGGACGAAGACTCTCTCCAGTTACAACTTAGAGATGGGT 309
Query 512 TTTCTTCGGATACAGAGTTTGTTTATATAGGATCACTTAATGCTGATATTGGTATTAGTG 571
||||||| || ||||||||| | || | ||||||||||| | |||||| | | ||||
Sbjct 310 TTTCTTCAGAAACAGAGTTTCTCTACGTTGGATCACTTAACGTTGATATCGAAACGAGTG 369
Query 572 AACAAGAAGAAGTTTCTCATAA-GCTTTT-GTTGG-ATTTCAATTGTGTTCCTACGTTTT 628
| |||||||||||||| || || |||||| | || |||| || || ||| | |||||||
Sbjct 370 AGCAAGAAGAAGTTTCACA-AAGGCTTTTAG-AGGAATTT-AACTGCGTTGCAACGTTTT 426
Query 629 T-ACCCAAGGAGATGCAAGAGAA-GTTCTATCTTGGTTTCTGTAAACATCATTTGTGGCC 686
| | ||| ||| ||||||| || ||||||||||||||||||||||||||| || |||||
Sbjct 427 TGTCTCAA-GAGTTGCAAGA-AATGTTCTATCTTGGTTTCTGTAAACATCAGTTATGGCC 484
Query 687 GCTATTTCACTATATGCTTCCTATGTTCCCTGACCATGGTGATCGTTTTGACCGGCGTCT 746
|| ||||| || |||||||| ||||| ||||| ||||| |||||||| ||| ||||| |
Sbjct 485 ACTCTTTCATTACATGCTTCCAATGTTTCCTGATCATGGAGATCGTTTCGACAGGCGT-T 543
Query 747 T-TGGCAAGCGTATGTCTCTGCAAACAAGATATTTTCAGATAGGGTGATGGAAGTTATCA 805
| |||||||| ||||| ||||| |||||||||||||||||||| || |||||||||||||
Sbjct 544 TATGGCAAGCTTATGTGTCTGCTAACAAGATATTTTCAGATAGAGTTATGGAAGTTATCA 603
Query 806 ACCCTGAGGAAGATTATGTTTGGATTCATGATTATCATCTGATGGTTCTTCCCACATTCT 865
|||||||||| ||||||||||||||||| ||||||||||| ||||||||||| || ||||
Sbjct 604 ACCCTGAGGATGATTATGTTTGGATTCAAGATTATCATCTTATGGTTCTTCCTACTTTCT 663
Query 866 TGAGGAAACGGTTTAACAGGATCAAGCTTGGATTTTTCCTTCACAGTCCATTTCCATCAT 925
|||||||||| ||||| ||||| || || || ||||||||||| ||||| ||||| || |
Sbjct 664 TGAGGAAACGTTTTAATAGGATTAAACTCGGGTTTTTCCTTCATAGTCCGTTTCCTTCTT 723
Query 926 CAGAAATTTACCGTACTTTGCCAGTCCGGGATGATCTTTTGAGAGGATTGTTGAACTGTG 985
|||| |||||||| || ||||| || || || || |||||||||| |||||||| ||||
Sbjct 724 CAGAGATTTACCGCACATTGCCTGTTCGTGACGAGATTTTGAGAGGTTTGTTGAATTGTG 783
Query 986 ATCTCATTGGCTTCCACACATTTGATTATGCACGCCATTTTTTGTCATGCTGCAGTAGAA 1045
|||| ||||| ||||| || |||||||| ||||| ||||| ||||| || || |||||||
Sbjct 784 ATCTTATTGGATTCCATACGTTTGATTACGCACGGCATTTCTTGTCTTGTTGTAGTAGAA 843
Query 1046 TGCTTGGGCTTGATTATGAATCTAAGCGTGGGCACATCGGGCTTGATTACTTTGGTCGAA 1105
||||||| ||||||||||| |||||||| || || || |||||||||||||||||| | |
Sbjct 844 TGCTTGGTCTTGATTATGAGTCTAAGCGCGGTCATATAGGGCTTGATTACTTTGGTAGGA 903
Query 1106 CGGTGTTTATTAAGATCCTTCCTGTTGGCATCCATATGGGGAGGCTGGAATCGGTTTTGA 1165
| |||| ||| || || ||||||||||| | |||||||| || ||||||| |||||||
Sbjct 904 CTGTGTATATCAAAATTCTTCCTGTTGGTGTTCATATGGGTAGATTGGAATCTGTTTTGA 963
Query 1166 ATCTTCCGTCGACTGCAGCGAAAATGAAAGAGATACAAGAACAGTTTAAGGGGAAAAAGT 1225
||||| || ||||| ||||||| ||||||||| |||||||||||||| ||||||||
Sbjct 964 ATCTTGATTCTACTGCGGCGAAAACGAAAGAGATTCAAGAACAGTTTAAAGGGAAAAAAC 1023
Query 1226 TGATTCTTGGTGTTGACGACATGGACATCTTTAAAGGCATAAGCCTCAAA-CTTATAGCC 1284
|| |||||||| | || || ||||| || |||||||| ||||| || ||| ||||||||
Sbjct 1024 TGGTTCTTGGTATCGATGATATGGATATATTTAAAGGGATAAG-CTTAAAGCTTATAGCA 1082
Query 1285 ATGGAACGTCTCTTTGAGACATATTGGCATATGCGAGGAAAACTTG-TCCTGATTCAGAT 1343
||||||| |||||||||||| ||||||||| || |||| ||| ||| || || |||||||
Sbjct 1083 ATGGAACATCTCTTTGAGACTTATTGGCATTTGAGAGGGAAAGTTGTTCTTG-TTCAGAT 1141
Query 1344 AGTGAACCCAGCACGGGCCACGGGTAAGGATGTGGAAGAAGCAAAGAAG-GAGACATAT- 1401
||||||||| ||| | || | ||||| |||||||||||||| || ||| ||||| |||
Sbjct 1142 AGTGAACCCTGCAAGATCCTCTGGTAAAGATGTGGAAGAAGCGAA-AAGAGAGACGTATG 1200
Query 1402 TCAACTGCAAAAAGGATCAATGAGCGCTATGGTTCTGCTGGTTATCAGCCAG-TGA-TCT 1459
| ||||| ||||||||||||||||| || ||| || ||| |||| |||| | | | |||
Sbjct 1201 T-GACTGCGAAAAGGATCAATGAGCGTTACGGTACTTCTGATTATAAGCC-GAT-AGTCT 1257
Query 1460 TGATTGATCGTCTTGTTCCTCGTTAC-GAGAAGACTGCTTATTATGCTATGGCAGACTGC 1518
||||||||||||||||||| |||| | ||||| || || ||||||||| ||||| ||
Sbjct 1258 TGATTGATCGTCTTGTTCCACGTT-CTGAGAAAACCGCGTATTATGCTGCAGCAGATTGT 1316
Query 1519 TGCCTGGTGAATGCAGTAAGAGACGGCATGAACTTAGTTCCATATAAATATATCA-TTTG 1577
||| |||||||||| || ||||| || |||||||||||||| ||||| ||||| | | ||
Sbjct 1317 TGCTTGGTGAATGCTGTGAGAGATGGTATGAACTTAGTTCCTTATAAGTATAT-AGTCTG 1375
Query 1578 CAG-GCAAGGGACCCCAGGAATGGATAAGG-CCATGGGGATTAGCCATGACTCAGCCCGG 1635
||| | |||||| | | ||| | |||| || || |||| ||| | | ||||
Sbjct 1376 CAGAG-AAGGGA-CTC--GAA---ACAAGGCCCTTGATGATT---CAT--CGC--CCCGC 1421
Query 1636 ACGAGCATGCTTGTTGTCTCTGAGTTTATCGGCTGCTCGCCTTCTTTGAGTGGTGCGATC 1695
|| |||| ||||||||| ||||||||||| || ||||||||||||||||||||||| ||
Sbjct 1422 ACAAGCACGCTTGTTGTGTCTGAGTTTATTGGATGCTCGCCTTCTTTGAGTGGTGCCATT 1481
Query 1696 AGGGTGAACCCATGGGATGTAGATGCTGTTGCAGAAGCGGTAAACTTAGCCCTCACTATG 1755
|||||||| ||||||||||| ||||||||||| || |||||||||| || || | |||
Sbjct 1482 AGGGTGAATCCATGGGATGTGGATGCTGTTGCGGAGGCGGTAAACTCGGCTCTTAAAATG 1541
Query 1756 GGTGAGACTGAAAAGCGATTAAGGCACGAGAAACACTATCACTATGTGAGTACTCATGAT 1815
||||||| || |||| | || |||| |||||||| || |||||| | || |||||||||
Sbjct 1542 AGTGAGACCGAGAAGCAACTACGGCATGAGAAACATTACCACTATATTAGCACTCATGAT 1601
Query 1816 GTGGGTTACTGGGCAAAGAGCTTTATGCAGGATCTTGAGAGGGCATGCCGGGAGCATTAT 1875
|| |||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 1602 GTTGGTTACTGGGCAAAGAGCTTTATGCAGGATCTTGAGAGAGCGTGCCGGGATCATTAT 1661
Query 1876 AATAAACGTTGTTGGGGTATTGGTTTTGGCTTGAGTTTCAGAGTTCTGTCACTGTCTCCG 1935
| ||||||||||||||| ||||| ||||| ||| | ||||||||| |||| || |||||
Sbjct 1662 AGTAAACGTTGTTGGGGGATTGGATTTGGATTGGGGTTCAGAGTTTTGTCGCTCTCTCCA 1721
Query 1936 AGTTTTAGGAAGCTATCTATCGATCACATTGTCTCCACGT--ATAGAAATACACAGAGAA 1993
||||||||||||||||| | || ||||||||| || || ||||||| ||||||||||
Sbjct 1722 AGTTTTAGGAAGCTATCCGTGGAACACATTGTC-CCG-GTTTATAGAAAAACACAGAGAA 1779
Query 1994 GGGCAATATTT-TTGGACTATGATGGCACTCTCGTTCCTGAAAGCTCCATCAT-CAAAAC 2051
|||| |||||| ||| | |||||||||||||| ||||||||||||||||| | ||| |
Sbjct 1780 GGGCGATATTTCTTG-ATTATGATGGCACTCTTGTTCCTGAAAGCTCCATTGTTCAAGAT 1838
Query 2052 CCCTAATGC-C-GAAGTCCTGTCTGTTCTGAAATCTCTGTGTGGAGATCCTAAAAACACT 2109
|| || || | || || | |||||||||||| |||| || | |||||| || |||||
Sbjct 1839 CC--AA-GCTCTGAGGTTGTCTCTGTTCTGAAAGCTCTCTGCGAAGATCCCAATAACACG 1895
Query 2110 GTGTTTGTTGTCAGTGGAAGAGGATGGGAGTCTCTGAGCGACTGGCTATCTCCATGTGAA 2169
|||||| |||| |||||||||||| |||||||||||| ||||||||||||| ||||||
Sbjct 1896 GTGTTTATTGTTAGTGGAAGAGGAAAAGAGTCTCTGAGCAACTGGCTATCTCCTTGTGAA 1955
Query 2170 AATCTTGGAATCGCAGCTGAACACGGATACTTCATAAGGTGGAGTAGCAA-GAAAGAATG 2228
||||||||||| || || ||||||||||||||||||||||||| |||||| || || ||
Sbjct 1956 AATCTTGGAATAGCGGCGGAACACGGATACTTCATAAGGTGGAATAGCAAAGAT-GAGTG 2014
Query 2229 GGAGACTTGTTATTCGTCGGCTGAGGCGGAATGGAAGACGAT-GGTAGAACCGGTAATGA 2287
||||||||||||||| | | || | || |||| | | || ||| |||||||| ||||
Sbjct 2015 GGAGACTTGTTATTCACCTTCGGATACAGAGTGGAGGTC-ATTGGTGGAACCGGTTATGA 2073
Query 2288 GATCATACATGGACGCAACCGATGGTTCTACTATAGAGTACAAAGAGAGTGCTTTGGTTT 2347
|||| || ||||| ||||| ||||| | | |||||||| ||||| ||||||||||| |
Sbjct 2074 GATCGTATATGGAGGCAACGGATGGAACCAGTATAGAGTTTAAAGAAAGTGCTTTGGTGT 2133
Query 2348 GGCATCATCAAGACGCAGATCCAGACTTTGGAGCCTGTCAAGCAAAAGAGCTTCTAGATC 2407
|||| ||||||||||||||||| ||||||||| | |||||||| || ||| | || ||||
Sbjct 2134 GGCACCATCAAGACGCAGATCCGGACTTTGGATCATGTCAAGCTAAGGAGATGCTTGATC 2193
Query 2408 ATCTAGAGAGTGTACTCGCAAATGAGCCTGTAGTCGTCAAGAGAGGCCAACACATTGTAG 2467
||||||||| ||| ||||| ||||||||||| || ||||||||||| |||||||| || |
Sbjct 2194 ATCTAGAGAATGTTCTCGCCAATGAGCCTGTGGTTGTCAAGAGAGGTCAACACATCGTTG 2253
Query 2468 AGGTCAAACCACAGGGAGTAAGCAAAGGTCTAGCAGTGGAAAAGGTGATAC-ACCAAATG 2526
| |||||||||||||| ||||||||||||||||| | ||||||||| || | | || ||
Sbjct 2254 AAGTCAAACCACAGGGTGTAAGCAAAGGTCTAGCTGCGGAAAAGGTAATCCGAGGAA-TG 2312
Query 2527 GTAGAG-GATGGAAACCCACCGGACATGGTGATGTGTATAGGAGATGACAGATCAGACGA 2585
||||| | || | || |||||| ||||||||||| |||||||| || |||||||||||
Sbjct 2313 GTAGAACGCGGGCAGCC-ACCGGAAATGGTGATGTGCATAGGAGACGATAGATCAGACGA 2371
Query 2586 AGACATGTTTGAGAGCATATTGAGCACAGTGACAAACCCGGACCTCCCAATGCCA-CCTG 2644
||||||||||||||||||||| |||||||||||||| || || || | | | | || |
Sbjct 2372 AGACATGTTTGAGAGCATATTAAGCACAGTGACAAATCCAGAGCTTCTTGTTC-AGCCAG 2430
Query 2645 AGATCTTTGCCTGCACGGTGGGAAGAAAACCAAGCAAAGCCAAATACTTCTTAGACGATG 2704
|| | ||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 2431 AGGTTTTTGCATGCACGGTTGGAAGAAAACCAAGCAAAGCTAAATACTTCTTGGACGATG 2490
Query 2705 TCTCTGATGTA-TTAAAGCTCCTAGGAGG 2732
| || || |||| ||||||| ||||
Sbjct 2491 AAGCCGACGTGCTTAA-GCTCCTAAGAGG 2518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112251952015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5