BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23880.1
Length=2215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472649 jgi|Araly1|472649|fgenesh2_kg.1__2603__AT1G23880.1 2689 0.0
Ahg476152 jgi|Araly1|476152|fgenesh2_kg.2__1282__AT1G70280.2 913 0.0
> Ahg472649 jgi|Araly1|472649|fgenesh2_kg.1__2603__AT1G23880.1
Length=1990
Score = 2689 bits (1456), Expect = 0.0
Identities = 1750/1885 (93%), Gaps = 47/1885 (2%)
Strand=Plus/Plus
Query 349 ACATATTCCAGTAACA-AT-TACATGTGT-AAATATTTTGAAGATTA-TTCCCTGA-ATA 403
|||||||||||||||| | || |||||| |||||| || || | || || | | | |
Sbjct 135 ACATATTCCAGTAACAGTTATATATGTGTAAAATATCTTAAACAATAGTT---T-ACA-A 189
Query 404 AAATCTTAAATTAATCACCAAAAACCTTAATAtttttttttAATTGTTGCGCCGACGTTT 463
||||||||||||||||| | |||||||||||| | ||||||||||||||||||||||||
Sbjct 190 AAATCTTAAATTAATCAGC-AAAACCTTAATA-ATCTTTTTAATTGTTGCGCCGACGTTT 247
Query 464 ATGGCATGACCAATGTGTCActtttctacgcctctctttctatttt-attttgttgcttt 522
|||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||
Sbjct 248 ATGGCATGACCAATGTGTCACTTTTCTACGCCTCTC--TCTTTTTTGTTTTTGTTGC-TT 304
Query 523 ctcttcttcttcaacctttctccttcctttttttttCTCAGATTGTCACGAAGTGTCACT 582
|| ||||||||||||||||||||||| ||||||| ||||||||||| | |||
Sbjct 305 -TC-TCTTCTTCAACCTTTCTCCTTCC---TTTTTTCACAGATTGTCAC------T-ACT 352
Query 583 ACTTCGTTCAACATTTTAAA-CA------TTCATCTTTCTCATTTCGCTATTCGTCTCTC 635
||||| |||||||||| ||| || ||||||||||||| ||||||| |||| ||||
Sbjct 353 ACTTCATTCAACATTTCAAACCACCTCTGTTCATCTTTCTCACTTCGCTAATCGTTTCTC 412
Query 636 CTCAACTTTAGTAATGAGTAGGCATTTTCTGTTTCTGGGTATTATCATTCTTC-TCTTCT 694
|||||||||||| ||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 413 CTCAACTTTAGTGATGAGTAGGCATTTTCTGTTTCTGGGTATTATCATTC-TCATCCTCT 471
Query 695 CTGCGTTTGTTGCTTCAGCTCCTTCATCAACTTC-ACCTGCGA-AGATTGTTAATAGTTT 752
||| |||||| ||||||||||||||| ||| ||| | ||| | ||||||||||||||||
Sbjct 472 CTGGGTTTGTAGCTTCAGCTCCTTCACCAA-TTCTTCTTGC-AGAGATTGTTAATAGTTT 529
Query 753 CATCTCAAATCATGGCACTTCCTTATTGAAATGGTTATGGTCTCTCTCTTTCAAAACCAC 812
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 530 CATCTCGAATCATGGCACTTCCTTAATGAAATGGTTATGGTCTCTCTCTTTCAAAACCAC 589
Query 813 CACTAAAACAGCTGTTCCTACGAAATCGATGGTGAAATTCGAAAATGGGTATTCAGTGGA 872
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 590 CACTAAAACAGCTGTTTCTACGAAATCGATGGTGAAATTTGAAAATGGGTATTCAGTGGA 649
Query 873 AACGGTGTTAGACGGAAGCAAACTCGGTATCGAACCTTATTCTATTCAGGTCTTATCC-A 931
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 650 AACGGTGTTAGACGGAAGCAAACTCGGTATCGAACCTTATTCTCTTCAGGTCTTA-CCTA 708
Query 932 ATGGCGAATTGCTTATTCTGGATTCTCAGAATAGTAACATTTACCAGATTTCATCTTCTC 991
|||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 709 ATGGCGAATTACTTATTCTGGATTCTCAGAATAGTAACCTTTACAAGATTTCATCTTCTC 768
Query 992 TTTCCCTTTATAGCAGACCCAGGCTAGTTACTGGCTCCCCTGAAGGATATCCGGGTCATG 1051
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 769 TTTCCCTTTATAGCAGACCGAGGCTGGTTACTGGCTCCCCTGAAGGATATCCGGGTCATG 828
Query 1052 TGGACGGTAGATTAAGGGACGCGAGGTTGAACAATCCTAAGGGACTCACAGTTGATGATA 1111
|||| || ||||| || |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 829 TGGATGGAAGATTGAGAGACGCGAGATTGAACAATCCTAAGGGACTCACGGTTGATGATA 888
Query 1112 GAGGAAATATCTATGTTGCAGATACTGTGAATAATGCTATCAGGAAGATCAGTGAAGCAG 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAGGAAATATCTATGTTGCAGATACTGTGAATAATGCTATCAGGAAGATCAGTGAAGCAG 948
Query 1172 GAGTCACAACCATTGCTGGGGGGAAAATGGTTCGTGGGGGAGGTCATGTGGATGGTCCAA 1231
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 949 GAGTCACAACCATTGCTGGGGGAAAAATGGTTCATGGGGGAGGTCATGTGGATGGTCCAA 1008
Query 1232 GTGAAGATGCAAAGTTTTCAAATGATTTTGATGTTGTTTATCTCGGGAGCAGTTGTTCCT 1291
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1009 GTGAAGATGCAAAGTTTTCAAATGATTTTGATGTTGTTTATCTCGGAAGCAGTTGTTCCT 1068
Query 1292 TGCTAGTCATTGACCGAGGAAACCAAGCCATCAGAGAGATTCAACTCCATTTTGACGACT 1351
|||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 1069 TGCTAGTCATTGACCGCGGGAACCAAGCCATCAGAGAGATTCAACTCCATTTCGACGACT 1128
Query 1352 GTGCTGATCAGTATGGAAGTGGCTTTCCTCTGGGGATTGCAGTTCTTGTAGCGGCAGTTT 1411
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||
Sbjct 1129 GTGCTGATCAGTATGGAAGTGGCTTTCCTCTTGGGATTGCAGTTCTTGTAGCAGCAATTT 1188
Query 1412 TCTTTGGCTATATGCTGGCCTTGTTGCAACGTAGACTCAGTTCTATCGTTTCATATCATA 1471
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1189 TCTTTGGCTATATGCTGGCTTTGTTGCAACGTAGACTCAGTTCTATCATTTCATATCATA 1248
Query 1472 CTGATCAAGAAGTGTTTGAAGCTGTGCCTGATCAAGATCCTATAAAACCGGTCAGACCAC 1531
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 CTGATCAAGAAGTATTTGAAGCTGTGCCTGATCAAGATCCTATAAAACCGGTCAGACCAC 1308
Query 1532 CGCTAATTCTAACTGGAGACGAGCAAGAAAAACAAGAAGAAAGCTTCCTTGGAACGTTGC 1591
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 CGCTGATTCCAACTGGAGACGAGCAAGAAAAACAAGAAGAAAGCTTCCTTGGAACGTTGC 1368
Query 1592 AGATATTCATTTCAAATGCTTGGGTGTTTTCTGTGGAGCTGTTCAGTGGAATGTTTCCCG 1651
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1369 AGATATTCATTTCGAATGTTTGGGTGTTTTCTGTGGAGCTGTTCAGTGGAATGTTTCCTG 1428
Query 1652 GTCTCAGAAAGAAGCAGACAGTCGGCTTGAACTTCAACCATCAAGAAACAAAGCATTCTG 1711
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1429 GTCTCAGAAAGAAACAGACAGTTGGCTTCAACTTCAACCATCAAGAAACAAAGCATTCTG 1488
Query 1712 CTTTTAGCACAACTTCATGGCCAATTCAAGAAAGCTTTGTAATACACAACAAAGATGAAC 1771
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1489 CCTTTAGCACAACTTCATGGCCAATTCAAGAGAGCTTTGTAATACACAACAAAGATGAAC 1548
Query 1772 CACCTCCCGTCGAGTCCAGGAACGCCACTCCTGGAAAAATTTATCCTTTCATGTCCAAAG 1831
|||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1549 CACCTCCCATCGAGTCCAGGAACCCCACTCCCGGAAAAATTTATCCTTTCATGTCCAAAG 1608
Query 1832 ATGCAACAGAGAAAATGCAACAGCTGCGCCAAAGCCGTGCCTTGTACAGAAGCTTGGACG 1891
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1609 ATGCAGCAGAGAAAATGCAACAGCTGCGCCAAAGCCGTGCCTTGTACAGAAGCTTAGATG 1668
Query 1892 CCGAATTCCTCCAGGAGCAGCAACAAGAGAAGCATCAGCAGTATCACCATAGGCATCACT 1951
|||||||||||||||||||||| ||| |||||||||||||| |||||| ||||||||||
Sbjct 1669 CCGAATTCCTCCAGGAGCAGCAGCAACAGAAGCATCAGCAGCATCACCGTAGGCATCACG 1728
Query 1952 CAACAATCCCATACACTCTTTATGAGCAGAGCAGCGAGAAGACTAATGAGATTGTGTTTG 2011
|||| |||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1729 CAACGATCCCACACACTGTTTATGAGCGGAGCAGCGAGAAGAGTAATGAGATTGTGTTTG 1788
Query 2012 GGCCAGGCCAGGAGCAAGACCAGATGAATACTCATCAGAATATCCACCACAGAGCTCACC 2071
|||| ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct 1789 GGCCGGGCCAGGAGCAAGACCACATGAATACACATCAGAATATCCACTACAGAGCTCACC 1848
Query 2072 AATTTGTGAGTTACCCATATGGATACTATTCATAGACATGAGAAGTTGCTTAATATGATA 2131
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1849 AATTTGTGAGTTACCCATATGGATACTATTCATAGACATGAGAAGTTGCTTAATACGATA 1908
Query 2132 GTAGTAGTAGAGATTGGGAATTCAGGTATAGTT-TTTTAAAATTTGTTGAGAAGGCACAA 2190
||||||| | | |||||||||||||||||| | |||| | ||||||||||||||||||
Sbjct 1909 GTAGTAGCA-A--TTGGGAATTCAGGTATAGCTGTTTTGAGATTTGTTGAGAAGGCACAT 1965
Query 2191 TAGGGATTTGGGTATTTAGATCTCT 2215
|||||||||||||||||||||||||
Sbjct 1966 TAGGGATTTGGGTATTTAGATCTCT 1990
Score = 128 bits (69), Expect = 2e-28
Identities = 88/96 (92%), Gaps = 5/96 (5%)
Strand=Plus/Plus
Query 1 ATCTCTCTCACTGTTGTTTTCTTGTTTCTTTAGAATCGCAGTTTTTTGCTCTCTTTGTAT 60
|||||||||||||||||||||||||||||||||||| |||| |||| | ||||||||||
Sbjct 1 ATCTCTCTCACTGTTGTTTTCTTGTTTCTTTAGAATTGCAG-GTTTTAC-CTCTTTGTAT 58
Query 61 ---AGAAAGTCTCTGGTGGTTTGTAATTTACACGGA 93
|||||||||||||||||||||||||||||||||
Sbjct 59 AGAAGAAAGTCTCTGGTGGTTTGTAATTTACACGGA 94
> Ahg476152 jgi|Araly1|476152|fgenesh2_kg.2__1282__AT1G70280.2
Length=1872
Score = 913 bits (494), Expect = 0.0
Identities = 1068/1332 (80%), Gaps = 91/1332 (7%)
Strand=Plus/Plus
Query 648 AATGAGTAG-GCATTTTC-TGTTTCTGGGTATTATCATTCTTCTCTTCTCTGCGTTTGTT 705
|||| |||| | |||||| || ||||| ||||| ||||||| ||| |||||| |||||||
Sbjct 204 AATGGGTAGAG-ATTTTCTTG-TTCTGAGTATTCTCATTCTACTCCTCTCTGGGTTTGTT 261
Query 706 GCTTCAGCTCCTTCATC-AACTTCACCTGCGAAGATTGTTAAT-AGTTTCATCTCAAATC 763
|||||||||||||| | || ||| ||||| |||||| ||||| |||| ||||||||||
Sbjct 262 TCTTCAGCTCCTTCAGCTAA-TTCTCCTGCAAAGATTCTTAATGGGTTT-ATCTCAAATC 319
Query 764 ATGGCACTTCCT-TATTGAAATGGTTATGGTCTCTCTCTTTCAAAACCACCACTAAAACA 822
||||| ||| || || |||||||||||||| || | |||||||||| || ||||||
Sbjct 320 ATGGCTCTT-CTCTAATGAAATGGTTATGG----TCAC--TCAAAACCACAACCAAAACA 372
Query 823 GCTGTTCCTACGAAATCGATGGTGAAATTCGAAAATGGGTATTCAGTG--GAAACGGTGT 880
|| || | |||| ||||||||||||||| ||||||||||| | |||| || || ||||
Sbjct 373 ACTATTGCAACGAGATCGATGGTGAAATTTGAAAATGGGTA-T-AGTGTAGAGACAGTGT 430
Query 881 TAGACGGAAGCAAACTCGGTATCGAACCTTATTCTATTCAGGTCTTATCC-AATGGCGAA 939
| || ||||||||||| ||||| ||||| ||||| ||| | |||||| || || |||||
Sbjct 431 TCGATGGAAGCAAACTTGGTATTGAACCGTATTCGATTGAAGTCTTA-CCAAACGGCGAG 489
Query 940 TTGCTTATTCTGGATTCTCAGAATAGTAACATTTACCAGATTTCATCTTCTCTTTCCCTT 999
| |||||||| |||||| |||| |||||||| ||| |||| ||||||||||||| | ||
Sbjct 490 CTACTTATTCTTGATTCTGAGAACAGTAACATCTACAAGATCTCATCTTCTCTTT-CATT 548
Query 1000 -TATAGCAGACCCAGGCTAGTTACTGGCTCCCCTGAAGGATATCCGGGTCATGTGGACGG 1058
|||||||| || || || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 549 ATATAGCAGGCCGAGACTGGTTACTGGCTCTCCTGAAGGATATCCGGGTCATGTGGACGG 608
Query 1059 TAGATTAAGGGACGCGAGGTTGAA-CAATCCTAA-GGGACTCACAGTTGATGATAGAGGA 1116
|||||| | || |||| | |||| || |||||| ||| || || |||||||| ||||||
Sbjct 609 GAGATTACGTGATGCGAAGCTGAATCA-TCCTAAAGGG-CTTACGGTTGATGACAGAGGA 666
Query 1117 AATATCTATGTTGCAGATACTGTGAATAATGCTATCAGGAAGATCAGTGAAGCAGGAGTC 1176
|| || ||||| || || |||||||||||||||||| ||||||| ||||||| ||||||
Sbjct 667 AACATATATGTGGCTGACACTGTGAATAATGCTATCCGGAAGATAAGTGAAGGAGGAGTT 726
Query 1177 ACAACCATTGCTGGGGGGAAAATGGTTCGTGGGGGAGGTCATGTGGATGGTCCAAGTGAA 1236
||||| ||||||||||| |||| |||||| ||||| ||||||||||| |||||||||
Sbjct 727 ACAACAATTGCTGGGGGCAAAACGGTTCGAAATGGAGGGCATGTGGATGGACCAAGTGAA 786
Query 1237 GATGCAAAGTTTTCAAATGATTTTGATGTTGTTTATCTCGGGAGCAGTTGTTC-CTTGCT 1295
|||||||||||||| ||||||||||||||||||||| | || || |||||||| ||| ||
Sbjct 787 GATGCAAAGTTTTCCAATGATTTTGATGTTGTTTATGTTGGAAGTAGTTGTTCTCTT-CT 845
Query 1296 AGTCATTGACCGAGGAAACCAAGCCATCAGAGAGATTCAACTCCATTTTGACGACTGTGC 1355
|| |||||||||||||| |||||||||||||||||||||||||||| || ||||||||
Sbjct 846 TGTTATTGACCGAGGAAATAAAGCCATCAGAGAGATTCAACTCCATTTCGATGACTGTGC 905
Query 1356 TGATCAGTATGGAAGTGGCTTTCCTCTGGGGATTGCAGTTCTTGTAGCGGCAGTTTTCTT 1415
| ||||||||||||| || |||||||| |||||||| |||||||| || |||| ||||||
Sbjct 906 TTATCAGTATGGAAGCGGGTTTCCTCTTGGGATTGCGGTTCTTGTTGCTGCAGGTTTCTT 965
Query 1416 TGGCTATATGCTGGC-CTTGTTGCAACGTAGACTCAGTTCTATCGTTTCATATCATACTG 1474
||| |||||||| || || ||||||||| ||| || ||||||||||||| | ||||| ||
Sbjct 966 TGGTTATATGCTAGCTCT-GTTGCAACGAAGAGTCGGTTCTATCGTTTCTTCTCATAATG 1024
Query 1475 ATCAAGAAGTGTTTGAAGCTG-TGCCTGATCAAGA-TCCTATAAAACCGGTC-AGACCAC 1531
|||||||| ||| ||||||| | ||||||||| | || ||| ||||| || ||||||
Sbjct 1025 ATCAAGAAATGTACGAAGCTGAT-CCTGATCAAAAGTC-TATGAAACCA-TCTAGACCAT 1081
Query 1532 CGCTAATTCTAACTGGAGACGAGCA--A-GAAAAACAAGAAGAAAGCTTCCTTGGAA-CG 1587
| || |||| ||| ||||| ||||| | || |||||||| |||| ||| | || | ||
Sbjct 1082 CTCTTATTCCAACCGGAGATGAGCAGCAAGAGAAACAAGAGGAAACCTTTGT-GGTATCG 1140
Query 1588 TTGCAGATAT-TCATTTCAAATGCTTGGGTGTTTTCTGTGGAGCTGTTCAGTGGAATGTT 1646
|| || | || ||||||||||||||| || | | ||| | |||| | |
Sbjct 1141 CTGG-GAAAACTCGTTTCAAATGCTTGGGA-TT--C-------C-GTT-A-TGGA--GAT 1184
Query 1647 TCCCGGTCTCAGAAAGAAGCAGACAGTCG---GCT-TGAACT-TCAACCATCAAGA-AAC 1700
|| || | |||| |||||||||| | ||| | | | | | |||| || |||
Sbjct 1185 -CC---TC-C-GAAAAAAGCAGACAGGCACCAGCTATCAGCAGT-A-CCATGG-GACAAC 1235
Query 1701 AAAGCATTCTGCT---TTTAGCACA--A-CTTCATGGCCAATTCAAGAAAGCTTTGTAAT 1754
|||||| |||||| ||||||||| | || |||||||||||||||| |||||||| ||
Sbjct 1236 AAAGCAGTCTGCTGCATTTAGCACATCAACTCCATGGCCAATTCAAGAGAGCTTTGTGAT 1295
Query 1755 AC-ACAACAAAGATGAACCACCTCCCGTCGAGTCCAGGAACGCCA-CTCCTGGAAAAATT 1812
| | | | |||| ||||| ||||| || ||| |||||||| ||| |||| |||||| |
Sbjct 1296 TCGAGA-CGAAGACGAACCTCCTCCAGTTGAGCCCAGGAAC-CCAACTCCAAGAAAAACT 1353
Query 1813 TATCCTTTCATGTCCAAAGATGCAACAGAGAAAATGCAACAGCTGCGCCAAAGCCGTGCC 1872
||| |||| ||||||||||| || ||||||||||| |||||||| || ||||||||
Sbjct 1354 TATGCTTTTATGTCCAAAGACGCT---GAGAAAATGCAGCAGCTGCGTCAGAGCCGTGCA 1410
Query 1873 TTGTACAGAAGCTTGGACGCCGAATTCCTC---CAGGAGCAGCAACAAGAGAAGCATCAG 1929
|| ||||| |||| |||||| ||||||| | ||| | ||||| ||| || |||| |||
Sbjct 1411 TTCTACAGTAGCTGGGACGCAGAATTCCCCAATCAGCAACAGCAGCAAAAGCAGCACCAG 1470
Query 1930 CAGTATCACCAT 1941
|| |||| |||
Sbjct 1471 AAGCATCAGCAT 1482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83379546305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5