BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23890.2
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472651 jgi|Araly1|472651|fgenesh2_kg.1__2605__AT1G23890.2 1888 0.0
> Ahg472651 jgi|Araly1|472651|fgenesh2_kg.1__2605__AT1G23890.2
Length=1253
Score = 1888 bits (1022), Expect = 0.0
Identities = 1190/1269 (94%), Gaps = 19/1269 (1%)
Strand=Plus/Plus
Query 1 AGCAAAAATAAGTAACACAACACAAGTTACACAGAACAGTCGCTTTC-TCCTC-TCGATT 58
||||||||||||||||||||||| || | | | | || | ||| | ||| ||||||
Sbjct 1 AGCAAAAATAAGTAACACAACAC-AG-T---C-G--CTTTCTC-TTCATTCTCATCGATT 51
Query 59 TTGACATGGCTTGGGGATTTTCGTCCGTGTCTCTCTTCTTGTTCGTCGTTTTCAATCTGG 118
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 52 TTGACATGGCTTGGGGATTGTCGTCCGTGTCTCTCTTCTTGTTCGTCGTTTTCAATCTGG 111
Query 119 TGAGTGGTAAGATAGTTTTAGAAGAAGGGTACGAAGTCACAACGGTGGTCGATGGCCATA 178
||||||||||||||||||||||||| |||||||| |||||||| |||||||| || ||||
Sbjct 112 TGAGTGGTAAGATAGTTTTAGAAGATGGGTACGAGGTCACAACAGTGGTCGACGGTCATA 171
Query 179 AGTCTGGTCTGAATCCATACACGATTCATGCTTTACCAGGATCTTCTAATCTGATCGTCC 238
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 172 AGTCTGGTCTGAATCCATACACGATTCATGCTTTACCTGGATCTTCTAATCTCATCGTCC 231
Query 239 TTGATTCTTCCGGCAGTACATTTTACACTACTTCCTTTCCTTTGTCCGTTGATAGTGTGA 298
|||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||
Sbjct 232 TTGATTCTTCCGGCAGTACATTCTACACTACTTCATTTCCTTTGTCCTTTGATAGTGTGA 291
Query 299 TAAACCGGTTTGCTGGGGATGGGAGTTCGGGTCATGTAGATGGTAAAGCTGGTAACAGCC 358
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 292 TAAACCGGTTTGCTGGGGATGGGACTTCGGGTTATGTAGATGGTAAAGCTGGTAACAGCC 351
Query 359 GGTTCAGCAAACCCCGTGGTTTTGCTGTGGATGCTAAAGGGAATGTTTATGTTGCTGATA 418
|||||| ||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 352 GGTTCAACAAACCCCGTGGTTTTGCTATCGATGCTAAAGGGAATGTCTATGTTGCTGATA 411
Query 419 AGAGTAATAAAGCTATACGGAAGATCAGCTCTTCAGGTTCTGTAACCACCATTGCTGGAG 478
||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||
Sbjct 412 GGAGCAATAAAGCTATACGCAAGATCAGCTCTTCAGGTTATGTTACCACCATTGCTGGAG 471
Query 479 GGATCTCAAAGGCATTTGGACACAGAGATGGACCTGCACAGAATGCTACTTTCTCTAGCG 538
|||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 472 GGATCTCAAAAGAATTTGGACACAGAGATGGACCTGCACAGAATGCAACTTTCTCTAGCG 531
Query 539 ATTTCGAGATAACTTTTGTTCCTCAAAGATGTTGTTTGCTTGTTTCTGATCATGGAAATG 598
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 532 ATTTCGAGATAACTTTTGTTCCTCAAAGATGTTGCTTGCTTGTTTCTGATCATGGAAATG 591
Query 599 AAATGATTCGCCAGATAAATCTTAAGGAGGAGGATTGCCTCGAAAACTCTCATTCTAATT 658
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 592 AAATGGTTCGCCAGATAAATCTTAAGGAGGAGGATTGCCTCGAAAGCTCTCATTCTACTT 651
Query 659 TGGGGACATACTCTCTTTGGTCAATAGGGATTGTCCTTTCCTGCATTCTCGGGGTAGCCA 718
| |||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||
Sbjct 652 TAGGGACATATTCTCTTTGGTCGATAGGGATTTTCCTTTCATGCATTCTCGGGGTAGCCA 711
Query 719 TTGGATTTGCTGTTCGCCCTTACGTCATCCGTCATGAAGAAGTGAACCACCTCTCGTTCA 778
||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 712 TTGGATTTGCTGTCCGCCCTTACATCATTCGTCATGAAGAAGTGAACCACCTCTCGTTCA 771
Query 779 TCATGACATGGAAGCTTCTCCTAACCAAATTGGGGGAACAAGTTCTGACCTTCTTCTCCT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TCATGACATGGAAGCTTCTCCTAACCAAATTGGGGGAACAAGTTCTGACCTTCTTCTCCT 831
Query 839 ACATTAGAAACCGAGTTGCTGAATCAACCGTTTATTCAGTATTAAGTAGACTAGTTATGA 898
|||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||
Sbjct 832 ACATTAGAAACCGAGTTGCTGAATCAACTGTTTATTCGGTACTAAGTAGACTAGTTATGA 891
Query 899 TGATCGTGTCTCACCTTTCCCTCATGTATTCCGCCCTAAGTAGTTTAATTTGTTCGATGG 958
||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||
Sbjct 892 TGATCGTGTCTCACCTTTCCCTCATGTATTCCGCCCTAAGTAGATTAGTTAGTTCGATGG 951
Query 959 TATCTAGCCTTTTCTTCATGTGTCAACCCAATAATGTAGCTATTTTAGACAAAACA-GTC 1017
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct 952 TATTTAGCCTTTTCTTCATGTGTCAACCCAATAATGTAGCTATTTTAGACAAGACATG-C 1010
Query 1018 TCTGTGTCTGATCCCGAGAGTCCAGGTTGCGGCAACCCAAAGCCGCCCCTTTCACTGAAA 1077
||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1011 TCTGTATCTGATCCCAAGAGTCCAGGTTGCGGCAACCCAAAGCCGCCGCTTTCACTGAAA 1070
Query 1078 CCCTCTGATGATCTTATTGACCTAATAAGCTTTGATGATGAACAAGAACCTAACAATGAC 1137
||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1071 CCCTCTGATGATCATATGGACCTAATAAGCTTTGATGATGAACAAGAACCT------GAC 1124
Query 1138 AAAGATTGCAGGAATGAAGAGACTCTTCCTCATGCAACCATAGATGACATTATAAAGGTT 1197
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 AAAGATTGCAGTAATGAAGAGACTCTTCCTCATGCAACCATAGATGACATTATAAAGGTT 1184
Query 1198 CATGTTGAAGAATTTTCAAAGATGGCTGAAGAAGATACTGTAATTCATGGTTCTTCATCT 1257
|||||||||| ||||||||||||||||||| ||||| ||| || ||||||||||||||||
Sbjct 1185 CATGTTGAAGGATTTTCAAAGATGGCTGAAAAAGATGCTGCAACTCATGGTTCTTCATCT 1244
Query 1258 ACTGAGTAG 1266
|||||||||
Sbjct 1245 ACTGAGTAG 1253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47310539997
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5