BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G23900.1 Length=3141 Score E Sequences producing significant alignments: (Bits) Value Ahg472652 jgi|Araly1|472652|fgenesh2_kg.1__2606__AT1G23900.2 4669 0.0 Ahg475305 jgi|Araly1|475305|fgenesh2_kg.2__435__AT1G60070.1 1131 0.0 > Ahg472652 jgi|Araly1|472652|fgenesh2_kg.1__2606__AT1G23900.2 Length=3183 Score = 4669 bits (2528), Expect = 0.0 Identities = 2832/2978 (95%), Gaps = 24/2978 (1%) Strand=Plus/Plus Query 92 TCCTCGTAAAGTTGCCGGTGGACCAAGGTCCAACTCTTGAACACCCCAAATCATGAATCC 151 ||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 179 TCCTCGTAAAGTTACCGGTGGACCAAGGTCCAACTCTTGAACATCTCAAATCATGAATCC 238 Query 152 CTTTTCTTCTGGTACTCGTTTAAGGGACATGATCCGTGCCATAAGAGCATGCAAAACAGC 211 ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 239 CTTTTCTTCTGGTACTCGTCTAAGGGACATGATCCGTGCCATAAGAGCATGTAAAACAGC 298 Query 212 TGCGGAGGAGCGAGCTGTTGTAAGAAAGGAGTGTGCCGATATTCGAGCATTGATTAATGA 271 |||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 299 TGCGGAGGAGCGTGCTGTTGTAAGAAAAGAGTGTGCCGATATTCGAGCATTAATTAATGA 358 Query 272 AGATGACCCGCATGATCGGCACCGGAACCTTGCGAAA-CTCATGTTTATACACATGCTGG 330 |||||||||||| ||| |||||||||||||||| ||| |||||||||||||||||| ||| Sbjct 359 AGATGACCCGCACGATAGGCACCGGAACCTTGC-AAAGCTCATGTTTATACACATGTTGG 417 Query 331 GTTATCCC-ACACACTTTGGGCAGATGGAGTGCTTGAAGCTAATTGCATCTCCTGGATTT 389 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GTTA-CCCGACACACTTTGGGCAGATGGAGTGCTTGAAGCTAATTGCATCTCCTGGATTT 476 Query 390 CCAGAGAAGAGGATTGGATATCTAGGGCTAATGTTGCTTCTTGATGAGAGACAAGAAGTG 449 ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 477 CCAGAGAAGAGGATTGGATATCTTGGGTTAATGTTGCTTCTTGATGAGAGACAAGAAGTC 536 Query 450 TTGATGCTTGTCACAAATTCGTTAAAACAAGATCTTAATCACTCGAACCAGTATGTTGTA 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 TTGATGCTTGTCACAAATTCGTTAAAACAAGATCTTAATCACTCGAACCAGTATGTTGTA 596 Query 510 GGACTTGCTCTCTGTGCTTTAGGGAATATTTGTTCAGCAGAAATGGCCCGTGATCTTGCG 569 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 597 GGACTGGCTCTCTGTGCTTTAGGGAATATTTGTTCAGCGGAAATGGCCCGTGATCTTGCG 656 Query 570 CCAGAAGTAGAAAGATTAATCCAGTTTCGTGACCCTAATATCCGAAAGAAGGCGGCGCTT 629 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 CCAGAAGTAGAAAGATTAATCCAGTTTCGTGACCCTAATATCCGAAAGAAGGCGGCGCTT 716 Query 630 TGCTCTACTAGAATAATAAGGAAAGTTCCAGATCTAGCAGAAAACTTCGTAAATGCTGCT 689 |||||||| |||||| ||||||||||||||||||| ||||||||||| ||||| |||||| Sbjct 717 TGCTCTACGAGAATAGTAAGGAAAGTTCCAGATCTTGCAGAAAACTTTGTAAACGCTGCT 776 Query 690 GCTTCCTTGCTTAAAGAAAAGCATCATGGGGTTCTTATAACAGGAGTTCAACTTTGTTAT 749 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 GCTTCCTTGCTTAAAGAAAAGCATCATGGGGTTCTTATAACAGGAGTTCAACTTTGTTAT 836 Query 750 GAATTATGCACGATTAATGATGAAGCCCTAGAGTACTTCAGAACGAAATGCACAGAGGGA 809 |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 837 GAATTATGCACGATTAGTGATGAAGCCCTAGAGTACTTCAGAACGAAATGCACGGAGGGA 896 Query 810 CTGATAAAAACTTTGAGGGATATTACTAATAGCGCATATCAGCCTGAGTATGATGTTGCA 869 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 897 CTTATAAAAACTTTGAGGGATATGACTAATAGCGCATATCAGCCTGAGTATGATGTTGCA 956 Query 870 GGGATCACAGACCCTTTTCTCCACATACGGTTGCTCAGGCTCTTGCGTGTTTTAGGCCAG 929 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 957 GGGATCACAGACCCTTTTCTTCACATACGGTTGCTCAGGCTCCTGCGTGTTTTAGGCCAG 1016 Query 930 GGTGATGCTGATGCTAGTGATTTGATGACAGATATACTTGCACAGGTGGCAACAAAAACT 989 ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1017 GGTGACGCTGATGCTAGTGATTTGATGACTGATATACTTGCCCAGGTGGCAACAAAAACT 1076 Query 990 GAATCAAACAAAAACGCAGGGAATGCGGTACTCTATGAGTGTGTTGAAACAATCATGGCC 1049 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1077 GAATCAAACAAAAACGCAGGGAATGCGGTACTCTATGAGTGCGTTGAAACAATCATGGCC 1136 Query 1050 ATTGAAGACACCAATAGCTTGCGTGTGCTTGCTATCAATATCTTGGGAAGATTCTTATCT 1109 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 ATTGAAGACACCAATAGCTTGCGTGTGCTTGCTATCAATATCTTGGGAAGATTCTTATCT 1196 Query 1110 AACCGCGACAATAACATCAGATATGTTGCATTAAACATGCTGATGAAAGCTATCACTTTC 1169 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 1197 AACCGCGACAATAACATCAGGTATGTTGCATTAAACATGCTGATGAAAGCAATCACTTTC 1256 Query 1170 GATGATCAAGCAGTGCAAAGGCACAGAGTTACAATTTTGGAATGTGTGAAGGACCCAGAT 1229 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1257 GATGATCAAGCAGTGCAAAGGCACAGAGTTACAATTTTGGAATGTGTTAAGGACCCAGAT 1316 Query 1230 GCTTCTATCCGGAAAAGAGCTCTTGAGCTTGTCACTCTTTTGGTGAATGAAAACAATGTC 1289 ||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||| Sbjct 1317 GCTTCTATCCGGAAAAGAGCTCTGGAGCTTGTCACTCTTTTGGTGAATGAGAATAATGTC 1376 Query 1290 ACACAACTGACAAAGGAGCTAATTGATTATTTGGAAATCAGCGACGAAGATTTTAAGGAA 1349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1377 ACACAACTGACAAAGGAGCTAATTGATTATTTGGAAATCAGCGACGAAGATTTTAAGGAA 1436 Query 1350 GATCTTAGTGCAAAAATTTGTTTTATCGTTGAAAAGTTTTCTCCAGAAAAACTATGGTAC 1409 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1437 GATCTTAGTGCAAAAATTTGTTTTATCGTCGAAAAGTTTTCTCCAGAAAAACTATGGTAC 1496 Query 1410 ATTGATCAGATGCTCAAGGTTCTGTGTGAGGCTGGAAAGTTTGTGAAAGATGATGTGTGG 1469 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1497 ATTGATCAGATGCTTAAGGTTCTGTGTGAGGCTGGAAAGTTTGTGAAAGATGATGTGTGG 1556 Query 1470 CATGCACTTATTGTTGTCATAAGCAATGCATCAGAGCTTCATGGATATACAGTTAGGGCC 1529 || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1557 CACGCGCTTATTGTTGTCATAAGCAATGCATCAGAGCTTCATGGATATACAGTTAGGGCA 1616 Query 1530 TTGTACAAATCAGTCTTGACTTATTCGGAACAGGAGACCCTTGTCCGAGTGGCGGTATGG 1589 || |||||| |||||||||| ||||||||||||||||||||||| ||||||||||| ||| Sbjct 1617 TTATACAAAGCAGTCTTGACGTATTCGGAACAGGAGACCCTTGTTCGAGTGGCGGTGTGG 1676 Query 1590 TGCATTGGGGAATATGGTGATCTGTTGGTTAACAATGTGGGGATGCTTGGTATTGAAGAT 1649 ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| Sbjct 1677 TGCATTGGGGAATATGGCGATCTGTTGGTTAACAATGAGGGGATGCTTGGTATTGAAGAT 1736 Query 1650 CCAATAACGGTAACGGAATCTGATGCAGTGGACGTTATCGAGGATGCCATTACTCGCCAT 1709 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 1737 CCAATAACGGTAACGGAATCGGATGCAGTGGACGTTATCGAGGAGGCCATTACTCGCCAT 1796 Query 1710 AACTCAGATTCGACTACAAAAGCAATGGCATTGGTTGCTCTACTGAAGTTGTCATCCCGC 1769 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1797 AACTCAGATTCGACTACAAAAGCAATGGCATTGGTTGCTCTACTGAAGCTGTCATCCCGC 1856 Query 1770 TTTCCTTCTATTTCAGAGAGAATTAAAGACATAATTGTGAAGCAGAAAGGAAGCCTTCTC 1829 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1857 TTTCCTTCTATATCAGAGAGAATTAAAGACATAATTGTGAAGCAGAAAGGAAGCCTTCTC 1916 Query 1830 CTTGAAATGCAGCAGAGAGCTATTGAATACAATTCTATAGTTGACAGGCATAAAAATATC 1889 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1917 CTTGAAATGCAGCAGAGAGCTATTGAATTCAATTCTATAGTTGACAGGCATAAAAATATC 1976 Query 1890 AGGTCTTCTCTGGTTGACAGAATGCCGGTACTGGATGAGGCTACTTTCAATGTGAGGAGG 1949 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1977 AGGTCTACTCTGGTTGACAGAATGCCGGTACTGGATGAGGCTACTTTCAATGTGAGGAGG 2036 Query 1950 GCCGGCTCTTTTCCTGCATCAGTTTCAACCATGGCCAAGCCTTCAGTTAGCCTTCAAAAT 2009 |||||||||||||||||||||| |||||| ||||| |||||||||||||| |||| |||| Sbjct 2037 GCCGGCTCTTTTCCTGCATCAGCTTCAACAATGGCAAAGCCTTCAGTTAGTCTTCCAAAT 2096 Query 2010 GGTGTTGAGAAACTTCCTGTCGCTCCTCTTGTGGACTTGCTAGACCTAGATTCTGACGAT 2069 ||||||||||||| | ||| |||||||||||||| ||||||||||||| ||| |||||| Sbjct 2097 GGTGTTGAGAAACCTGTTGTAGCTCCTCTTGTGGATTTGCTAGACCTAGGTTCAGACGAT 2156 Query 2070 ATCATGGCTGCACCTAGTCCATCTGGTACAGATTTCCTTCAGGATCTTCTCGGTGTAGAC 2129 ||| ||||| |||||||| |||||||| ||||||| |||||||||||||||||||| ||| Sbjct 2157 ATCCTGGCTACACCTAGTTCATCTGGTCCAGATTTTCTTCAGGATCTTCTCGGTGTTGAC 2216 Query 2130 TTAGGTTCATCGTCAGCACAATATGGTGCAACCCAGGCTCCAA-AAGCTGGCACAGATCT 2188 ||||| |||||||| ||||| ||||||||| |||||| | || | ||||||||||| Sbjct 2217 TTAGGAGCATCGTCATCACAACCTGGTGCAACGTTGGCTCCGAGAACC-GGCACAGATCT 2275 Query 2189 GTTGCTGGATATTCTATCAATTGGAACACCTTCTCCTGCACAAAACAGCACATCATCTAT 2248 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2276 GTTGATGGATATTCTATCAATTGGAACACCTTCTCCTGCACAAAACAGCACATCATCTGT 2335 Query 2249 TGGTTTATTATCAATAGCTGACGTTAACAATAATCCCTCAATTGCGCTAGACACACTTTC 2308 || ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 2336 TGATTTATTATCAACAGCTGACGTAAACAGTAATCCCTCAATTGCGCTAGACACACTTTC 2395 Query 2309 TTCACCAGCTCCACCTCACGTAGCAACAACTTCGTCCACCGGTATGTTTGATTTGCTAGA 2368 ||||||||||||||||||||||||||| |||||||||| |||||||||||||||| || | Sbjct 2396 TTCACCAGCTCCACCTCACGTAGCAACGACTTCGTCCAACGGTATGTTTGATTTGTTACA 2455 Query 2369 TGGTCTTTCTCCAAGCCCATCGAAGGAAGCCACCAATGGTCCAGCTTATGCACCTATTGT 2428 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| Sbjct 2456 TGGTCTTTCTCCAAGCCCATCGAAGGAAGCCACCAATGGTCCAGCATATCCACCAATTGT 2515 Query 2429 TGCATACGAGAGCAGCTCCTTGAAGATTGAGTTCACCTTCTCAAAGACACCAGGGAATCT 2488 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2516 TGCATACGAGAGCAGCTCCTTGAAGATTGAGTTCACCTTCTCAAAGGCACCAGGGAATCT 2575 Query 2489 GCAAACGACAAATGTCCAGGCTACTTTTACTAATTTATCTCCCAATACTTTCACAGATTT 2548 |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2576 GCAATCGACAAATGTCCAAGCTACTTTTACTAATTTATCTCCCAATACTTTCACAGATTT 2635 Query 2549 TATATTCCAGGCTGCTGTTCCAAAGTTCCTCCAGCTGCACTTGGATCCAGCTAGCAGTAA 2608 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2636 TATATTCCAAGCTGCTGTTCCAAAGTTCCTCCAGCTGCACTTGGATCCAGCTAGCAGTAA 2695 Query 2609 CACACTCCTGGCAAGCGGTAGTGGTGCCATCACGCAGAATCTAAGAGTCACTAACAGCCA 2668 |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2696 CACACTCCCGGCAAGCGGTAACGGTGCCATCACGCAGAATCTAAGAGTCACTAACAGCCA 2755 Query 2669 GCAGGGGAAGAAATCTCTTGTGATGCGCATGAGGATTGGGTACAAACTGAACGGAAAAGA 2728 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2756 GCACGGGAAGAAATCCCTTGTGATGCGCATGAGGATTGGGTACAAACTGAACGGAAAAGA 2815 Query 2729 TGTATTAGAGGAAGGACAAGTCAGCAACTTCCCTCGCGGGTTGTGAAACTCATCGATCAG 2788 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 2816 TGTATTAGAGGAAGGACAAGTCAGCAACTTCCCTCGCGGGTTGTAAAACTGATCGATCAG 2875 Query 2789 CCATTGTATTTTCAGCATAAGGACTTGAGTGTTTCTTT-CTATCAAACCCAACTAAAAAA 2847 ||||||||||||||||| |||||||||||||||||||| | ||||| ||| ||||||||| Sbjct 2876 CCATTGTATTTTCAGCAGAAGGACTTGAGTGTTTCTTTTC-ATCAA-CCCGACTAAAAAA 2933 Query 2848 -GAAAGACAAGTCTTGCCCAAGCCGTTGATGCAGC---------TTTCTCCTTCCAATT- 2896 ||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 2934 AGAAAGACAAGTCTAGCCCAAGCCGTTGATGCAGCAAAAGCAGCTTTCTCCTTCCAATTC 2993 Query 2897 TTTTCATCCGTTTTATGAAACAAGTAGTACTTTGGCCTTTGCTTGTGATTTGAGGTTCTT 2956 |||||||| |||| |||||||||||| |||||||||||| |||||||||||||||||| Sbjct 2994 TTTTCATCTGTTTCATGAAACAAGTA---CTTTGGCCTTTGTTTGTGATTTGAGGTTCTT 3050 Query 2957 GGGTTTTCTTTTTGTACAAAAGTTTTGATGTTTGGAATCGGAAAGTGGTCAAG-AAGTAG 3015 ||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || Sbjct 3051 GGGGTTTCTTTTTGTACAAAAGTTTTGATGTTTGGAATCGGAAAGCGGTCAAGGAAGAAG 3110 Query 3016 AATTTGTCTCTCATGTCTCTGAGACTATAAAAAAGATG 3053 | |||||||||| ||| ||| |||||| |||||| ||| Sbjct 3111 AGTTTGTCTCTCTTGTGTCTAAGACTACAAAAAACATG 3148 Score = 73.1 bits (39), Expect = 1e-11 Identities = 39/39 (100%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 3079 CATGATGTATCTACTACAGTTACAATTTTCGTCTTGCAA 3117 ||||||||||||||||||||||||||||||||||||||| Sbjct 3145 CATGATGTATCTACTACAGTTACAATTTTCGTCTTGCAA 3183 > Ahg475305 jgi|Araly1|475305|fgenesh2_kg.2__435__AT1G60070.1 Length=2990 Score = 1131 bits (612), Expect = 0.0 Identities = 1657/2150 (77%), Gaps = 117/2150 (5%) Strand=Plus/Plus Query 141 ATCATGAATCCCTTTTCTTCTGGTACTCGTTTAAGGGACATGATCCGTGCCATAAGAGC- 199 ||||||||||| || ||||| || || ||| | || |||||||| || || ||| | || Sbjct 217 ATCATGAATCCGTTCTCTTCCGGCACGCGTCTCAGCGACATGATTCGGGCTATACGTGCG 276 Query 200 ATGCAAAACAGCTGCGGAGGAGCGAGCTGTTGT-AAGAAAGGAGTGTGCCGATATTCGAG 258 | | ||||| ||||| ||||| || |||||||| | |||| |||||||| | || || | Sbjct 277 A-GTAAAACCGCTGCTGAGGAACGGGCTGTTGTGAGGAAA-GAGTGTGCTGCGATCCGTG 334 Query 259 CATT-GATTAATGAAGATGACCCGCA-TGATCGGCACCGGAACCTTGCGAAA-CTCATGT 315 | || |||||||||| |||||| | | | || | |||||| | || || ||| || |||| Sbjct 335 C-TTCGATTAATGAAAATGACCAGGACT-ATAGACACCGGGATCTAGC-AAAGCTTATGT 391 Query 316 TTATACACATGCTGGGTTATCCCACACACTTTGGGCAGATGGAGTGCTTGAAGCTAATTG 375 | || || ||||| |||||||||||||| |||||||||||||| || |||||| |||||| Sbjct 392 TCATTCATATGCTTGGTTATCCCACACATTTTGGGCAGATGGAATGTTTGAAGTTAATTG 451 Query 376 CATCTCCTGGATTTCCAGAGAAGAGGATTGGATATCTAGGGCTAATGTTGCTTCTTGATG 435 | ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct 452 CTTCTCCTGGATTTCCAGAGAAGAGGATTGGTTATCTTGGATTAATGTTGCTTCTTGATG 511 Query 436 AGAGACAAGAAGTGTTGATGCTTGTCACAAATTCGTTAAAACAAGATCTTAATCACT-CG 494 | || |||||||| || ||||| ||||| || ||||| || |||||||| ||||| | || Sbjct 512 AAAGGCAAGAAGTATTAATGCTGGTCACTAACTCGTTGAAGCAAGATCTGAATCA-TACG 570 Query 495 AACCAGTATGTTGTAGGACTTGCTCTCTGTGCTTTAGGGAATATTTGTTCAGCAGAAATG 554 ||||| || |||| || |||||||||||||||||||| ||||||||||||||||||||| Sbjct 571 AACCAATACATTGTGGGGCTTGCTCTCTGTGCTTTAGGAAATATTTGTTCAGCAGAAATG 630 Query 555 GCCCGTGATCTTGCGCCAGAAGTAGAAAGATTAATCCAGTTTCGTGACCCTAATATCCGA 614 || |||||||| || || ||||| ||||||||| | || ||||| || || ||||| || Sbjct 631 GCTCGTGATCTCGCCCCTGAAGTTGAAAGATTACTTCAATTTCGGGATCCAAATATACGC 690 Query 615 AAGAAGGCGGCGCTTTGCTCTACTA-GAATAATAAGGAAAGTTCCAGATCTAGCAGAAAA 673 ||||| || || |||||| | | || | || || || |||||||| ||||| | || || Sbjct 691 AAGAAAGCAGCTCTTTGCGCCA-TAAGGATCATCAGAAAAGTTCCGGATCTTTCTGAGAA 749 Query 674 CTTCGTAAATGCT-GCTGCTTCCTTGCTTAAAGAAAAGCATCATGGGGTTCTTATAACAG 732 ||| | ||| || | |||| | || || ||||||||||||||||| ||||| || || | Sbjct 750 CTTTATTAATCCTAG-TGCTGCTTTACTCAAAGAAAAGCATCATGGTGTTCTCATTACGG 808 Query 733 GAGTTCAACTTTGTT-ATGAATTATGCACGATTAATGAT--GAAGCCCTAGAGTACTTCA 789 ||||||| ||||| | ||| | || | | | | | | |||||||| || || ||| Sbjct 809 GAGTTCACCTTTGCACA-GAAATCTGTAA-AGTCA-GTTCCGAAGCCCTTGAATATTTCC 865 Query 790 G-AACGAAATGCACAGAGGGACT-GATAAAAACTTTGAGGGATATTACTAATAG-CGCAT 846 | || ||||||||||||||| || | | ||||| | || |||||| | || || | ||| Sbjct 866 GGAA-GAAATGCACAGAGGG-CTTGGTTAAAACCCTAAGAGATATTGCAAACAGTC-CAT 922 Query 847 AT-CAGCCTGAGTATGATGTTGCAGGGATCACAGACCCTTTTCTCCACATACGG-TTGCT 904 || || ||||||||||| || || || || || || || ||||| ||||| | | ||||| Sbjct 923 ATTCA-CCTGAGTATGACGTCGCTGGAATTACGGATCCATTTCTTCACAT-CAGATTGCT 980 Query 905 CAGGCTCTTGCGTGTTTTAGGCCAGGGTGATGCTGATGCTAGTGATT-TGATGACA-GAT 962 || || ||||||||||| ||||| || ||||| || || ||||| | | |||| | ||| Sbjct 981 CAAACTGTTGCGTGTTTTGGGCCAAGGCGATGCAGAGGCCAGTGACTGT-ATGA-ATGAT 1038 Query 963 ATACTTGCACAGGTGGCAACAAAAACTGAATCAAACAAAAACGCAGGGAATGCGGTACTC 1022 |||||||| ||||||||| ||||||| || ||||||||||| ||||| ||||| | || Sbjct 1039 ATACTTGCTCAGGTGGCATCAAAAACCGAGTCAAACAAAAATGCAGGCAATGCTATCCTA 1098 Query 1023 TATGAGTGTGTTGAAACAATCATG-GCCATTGAAGACACCAATAGCTTGCGTGTGCTTGC 1081 || || |||||| |||| || ||| || || ||||| | | | || || || ||||| Sbjct 1099 TACGAATGTGTTCAAACGATAATGAGC-ATCGAAGAAAATGGTGGTTTACGAGTCCTTGC 1157 Query 1082 TATCAATATCTTGGGAAGATTCTTATCTAACCGCGACAATAACATCAGATATGTTGCATT 1141 |||||||||||||||| |||||| || ||||| || |||||||||||||| || ||||| Sbjct 1158 AATCAATATCTTGGGAAAATTCTTGTCCAACCGAGATAATAACATCAGATACGTAGCATT 1217 Query 1142 AAACATGCTGATGAAAGC-TATCACT-TTCGATGATCAAGCAGTGCAAAGGCACAGAGTT 1199 |||||||||||||| | | | | ||| || ||| ||||| || || |||||||||| | Sbjct 1218 AAACATGCTGATGAGATCCT-TAACTGTT-GATTCCCAAGCGGTTCAGAGGCACAGAGCT 1275 Query 1200 ACAATTTTGGAATGTGTGAAGGACCCAGATGCTTCTATCCGGAAAAGAGCTCTTGAGCTT 1259 ||||| |||| ||||| ||||| |||||||||| || | |||||| || ||||||||| Sbjct 1276 ACAATCCTGGAGTGTGTTAAGGATTCAGATGCTTCAATTCAGAAAAGGGCACTTGAGCTT 1335 Query 1260 GTC-ACTCTTTTGGTGAATGAAAACAATGTCACA-CAACT-GACAAAGGAGCTAATTGAT 1316 | || ||| |||||||||| || || || | | | ||| | |||||||||| || || Sbjct 1336 ATTTAC-CTTCTGGTGAATGAGAATAACGTGA-AGCCACTAG-CAAAGGAGCTTATAGAA 1392 Query 1317 TATTTGGAAATCAGCGA-CGAAGATTTTAA-GGAAGATCTTAGTGCAAAAATTTGTTTTA 1374 ||||||||| | ||||| | |||||||||| ||| ||||||| |||||| || || | | Sbjct 1393 TATTTGGAAGTAAGCGAAC-AAGATTTTAAAGGA-GATCTTACTGCAAAGATATGCTCCA 1450 Query 1375 TCGTTGAAAAGTTTTCTCCAGA-AAAACTATGGTACATTGATCAGATGCTCAAGGTTCTG 1433 | |||||||||||| ||||||| |||| | |||||||||||||| ||||| |||||||| Sbjct 1451 TTGTTGAAAAGTTTGCTCCAGAGAAAA-TCTGGTACATTGATCAAATGCTAAAGGTTCTA 1509 Query 1434 T-GTGAGGCTGGAAAGTT-TGTGAAAGATGATGTGTGGCATGCACTTATTGTTGTCATAA 1491 | | |||||||||| || ||||||||| ||||| ||||| ||||| |||||||| |||| Sbjct 1510 TCG-GAGGCTGGAAC-TTATGTGAAAGAGGATGTATGGCACGCACTGATTGTTGTAATAA 1567 Query 1492 GCAA-TGCATCAGAGCTTCATGGATATACAGTTAGGGCCTTGTACAAATCAGT-CTTGAC 1549 ||| ||| | || || ||||| || || || ||||| ||||||| | || | | | || Sbjct 1568 -CAAATGCCCCTGATCTCCATGGGTACACTGTCAGGGCTTTGTACAGAGCATTACAT-AC 1625 Query 1550 TTATTCGGAACAGGAGACCCTTGTCCGAGTGGCGGTATGGTGCATTGGGGAATATGGTGA 1609 | || |||||||| || ||||| || || || |||||||||| || ||||||| ||| Sbjct 1626 ATCTTTTGAACAGGAAACGCTTGTGCGCGTTGCAATATGGTGCATAGGAGAATATGCTGA 1685 Query 1610 TCTGTTGGTTAACAATG-TGGGGATGCTTGGTATT-GAAGATCCAATAACGGTAACGGAA 1667 ||||||||||||||||| ||| ||||||| || |||||||||||||||||||| ||| Sbjct 1686 TCTGTTGGTTAACAATGCTGGA-ATGCTTGAC-TTAGAAGATCCAATAACGGTAACAGAA 1743 Query 1668 TCTGATGCAGTGGACGTTATCGAGGA-TGCCATTACTCGCCATA-ACTCAGAT-TCGACT 1724 || ||||||||||| ||| ||||| | ||| |||| | |||| | || ||| || || Sbjct 1744 TCAGATGCAGTGGATGTTGTCGAG-ACTGCTATTAAGCATCATACA-TCGGATGTC-ACG 1800 Query 1725 ACAAAAGCAATGGCATTGGTTGCTCTACTGAAGTTGTCATCCCGCTTTCC-TTCTAT-TT 1782 || || |||||| || | ||||||| | ||| | |||||||| ||||| |||| | || Sbjct 1801 ACTAAGGCAATGTCACTCATTGCTCTGTTAAAGATCTCATCCCG-TTTCCCTTCT-TGTT 1858 Query 1783 CAGAGAGAATTAAA-GACATAATTGTGAAGCAGAAAGGAAGCCTTCTCCTT-GAAATGCA 1840 ||||||| ||||| | || || | | || | ||||| ||| || || || ||| |||| Sbjct 1859 CAGAGAGGGTTAAAAGT-ATTATAGGGCAGAACAAAGGTAGCTTTGTC-TTAGAACTGCA 1916 Query 1841 GCAGAGAGCTATTGAATACAATTCTA-T-AGTTGACAGGCATAAAAATATCAGGTCTTCT 1898 || ||| | | |||| || ||| | | | || | | |||| | ||||| || ||| | Sbjct 1917 ACAAAGATCCCTGGAATTCAGTTC-AGTTA-TTCAAAAGCATCAGAATATAAGATCTGCC 1974 Query 1899 CTGGTTGACAGAATGCCGGTACTGGATGAGGCTAC-TTTCAATGTGA-GGAGGGCCGGCT 1956 |||||||| ||||||||||| || |||||||| || ||| | || || |||| || || | Sbjct 1975 CTGGTTGAAAGAATGCCGGTCCTTGATGAGGCAACATTT-AGTG-GAAGGAGAGCTGGTT 2032 Query 1957 CTTTTCCTGCATCAGTTTCAAC--CATGGCCAAGCCTTCAG-TTAGCCTTCAAAATGGTG 2013 |||| || ||| | || ||||| | ||| || | | | | ||||| ||| ||| |||| Sbjct 2033 CTTTACCAGCAGCTGTGTCAACTTC-TGGAAAATC-TCC-GCTTAGCATTCCAAACGGTG 2089 Query 2014 TTGAGAAA-CTTCCTGTC-GCTCCTCTTGTGGACTTGCTAGACCTAGATTCTGACGATAT 2071 ||| ||| || | | | |||||||| || || || || ||||| | ||||| |||| Sbjct 2090 TTGCTAAAGCTGC-TC-CAGCTCCTCTAGTAGATTTACTCGACCTTGGCTCTGATGATA- 2146 Query 2072 CATGGCTGCACCTAG-TCCATCTGGTA-CAGA-TTTCCTTCAGGATCTTCTCGGTGTAGA 2128 | | ||||||||| ||| || ||| || | |||| |||| |||||||| ||||| || Sbjct 2147 C-TC-CTGCACCTACCTCC-TCCAGTAACA-ACTTTC-TTCAAGATCTTCTTGGTGTTGA 2201 Query 2129 CTTAG-GTTCATCGT-CAGCACAATATGGTGCAACCCAGGC-TCCAAAAGCTGGCACAGA 2185 ||| | || | | |||||||| |||||| | ||| | || ||| |||||| | || Sbjct 2202 TTTAACG--CAGCCTTCAGCACAACCTGGTGCCATGCAGCCATCTAAA-GCTGGCGCGGA 2258 Query 2186 TCTG-TTGCTGGATAT-TCTATCAATTGGAACACCTTCTCCTGCACAAAA 2233 | | || ||||| | | | ||||||||||| ||| | |||| ||||| Sbjct 2259 TATTCTTA-TGGATCTGT-TGTCAATTGGAACTCCTGCCCCTGTGCAAAA 2306 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 118651113175 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5