BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23900.1
Length=3141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472652 jgi|Araly1|472652|fgenesh2_kg.1__2606__AT1G23900.2 4669 0.0
Ahg475305 jgi|Araly1|475305|fgenesh2_kg.2__435__AT1G60070.1 1131 0.0
> Ahg472652 jgi|Araly1|472652|fgenesh2_kg.1__2606__AT1G23900.2
Length=3183
Score = 4669 bits (2528), Expect = 0.0
Identities = 2832/2978 (95%), Gaps = 24/2978 (1%)
Strand=Plus/Plus
Query 92 TCCTCGTAAAGTTGCCGGTGGACCAAGGTCCAACTCTTGAACACCCCAAATCATGAATCC 151
||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 179 TCCTCGTAAAGTTACCGGTGGACCAAGGTCCAACTCTTGAACATCTCAAATCATGAATCC 238
Query 152 CTTTTCTTCTGGTACTCGTTTAAGGGACATGATCCGTGCCATAAGAGCATGCAAAACAGC 211
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 239 CTTTTCTTCTGGTACTCGTCTAAGGGACATGATCCGTGCCATAAGAGCATGTAAAACAGC 298
Query 212 TGCGGAGGAGCGAGCTGTTGTAAGAAAGGAGTGTGCCGATATTCGAGCATTGATTAATGA 271
|||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 299 TGCGGAGGAGCGTGCTGTTGTAAGAAAAGAGTGTGCCGATATTCGAGCATTAATTAATGA 358
Query 272 AGATGACCCGCATGATCGGCACCGGAACCTTGCGAAA-CTCATGTTTATACACATGCTGG 330
|||||||||||| ||| |||||||||||||||| ||| |||||||||||||||||| |||
Sbjct 359 AGATGACCCGCACGATAGGCACCGGAACCTTGC-AAAGCTCATGTTTATACACATGTTGG 417
Query 331 GTTATCCC-ACACACTTTGGGCAGATGGAGTGCTTGAAGCTAATTGCATCTCCTGGATTT 389
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GTTA-CCCGACACACTTTGGGCAGATGGAGTGCTTGAAGCTAATTGCATCTCCTGGATTT 476
Query 390 CCAGAGAAGAGGATTGGATATCTAGGGCTAATGTTGCTTCTTGATGAGAGACAAGAAGTG 449
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 477 CCAGAGAAGAGGATTGGATATCTTGGGTTAATGTTGCTTCTTGATGAGAGACAAGAAGTC 536
Query 450 TTGATGCTTGTCACAAATTCGTTAAAACAAGATCTTAATCACTCGAACCAGTATGTTGTA 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TTGATGCTTGTCACAAATTCGTTAAAACAAGATCTTAATCACTCGAACCAGTATGTTGTA 596
Query 510 GGACTTGCTCTCTGTGCTTTAGGGAATATTTGTTCAGCAGAAATGGCCCGTGATCTTGCG 569
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 597 GGACTGGCTCTCTGTGCTTTAGGGAATATTTGTTCAGCGGAAATGGCCCGTGATCTTGCG 656
Query 570 CCAGAAGTAGAAAGATTAATCCAGTTTCGTGACCCTAATATCCGAAAGAAGGCGGCGCTT 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CCAGAAGTAGAAAGATTAATCCAGTTTCGTGACCCTAATATCCGAAAGAAGGCGGCGCTT 716
Query 630 TGCTCTACTAGAATAATAAGGAAAGTTCCAGATCTAGCAGAAAACTTCGTAAATGCTGCT 689
|||||||| |||||| ||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 717 TGCTCTACGAGAATAGTAAGGAAAGTTCCAGATCTTGCAGAAAACTTTGTAAACGCTGCT 776
Query 690 GCTTCCTTGCTTAAAGAAAAGCATCATGGGGTTCTTATAACAGGAGTTCAACTTTGTTAT 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GCTTCCTTGCTTAAAGAAAAGCATCATGGGGTTCTTATAACAGGAGTTCAACTTTGTTAT 836
Query 750 GAATTATGCACGATTAATGATGAAGCCCTAGAGTACTTCAGAACGAAATGCACAGAGGGA 809
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 837 GAATTATGCACGATTAGTGATGAAGCCCTAGAGTACTTCAGAACGAAATGCACGGAGGGA 896
Query 810 CTGATAAAAACTTTGAGGGATATTACTAATAGCGCATATCAGCCTGAGTATGATGTTGCA 869
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 897 CTTATAAAAACTTTGAGGGATATGACTAATAGCGCATATCAGCCTGAGTATGATGTTGCA 956
Query 870 GGGATCACAGACCCTTTTCTCCACATACGGTTGCTCAGGCTCTTGCGTGTTTTAGGCCAG 929
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 957 GGGATCACAGACCCTTTTCTTCACATACGGTTGCTCAGGCTCCTGCGTGTTTTAGGCCAG 1016
Query 930 GGTGATGCTGATGCTAGTGATTTGATGACAGATATACTTGCACAGGTGGCAACAAAAACT 989
||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1017 GGTGACGCTGATGCTAGTGATTTGATGACTGATATACTTGCCCAGGTGGCAACAAAAACT 1076
Query 990 GAATCAAACAAAAACGCAGGGAATGCGGTACTCTATGAGTGTGTTGAAACAATCATGGCC 1049
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1077 GAATCAAACAAAAACGCAGGGAATGCGGTACTCTATGAGTGCGTTGAAACAATCATGGCC 1136
Query 1050 ATTGAAGACACCAATAGCTTGCGTGTGCTTGCTATCAATATCTTGGGAAGATTCTTATCT 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 ATTGAAGACACCAATAGCTTGCGTGTGCTTGCTATCAATATCTTGGGAAGATTCTTATCT 1196
Query 1110 AACCGCGACAATAACATCAGATATGTTGCATTAAACATGCTGATGAAAGCTATCACTTTC 1169
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1197 AACCGCGACAATAACATCAGGTATGTTGCATTAAACATGCTGATGAAAGCAATCACTTTC 1256
Query 1170 GATGATCAAGCAGTGCAAAGGCACAGAGTTACAATTTTGGAATGTGTGAAGGACCCAGAT 1229
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1257 GATGATCAAGCAGTGCAAAGGCACAGAGTTACAATTTTGGAATGTGTTAAGGACCCAGAT 1316
Query 1230 GCTTCTATCCGGAAAAGAGCTCTTGAGCTTGTCACTCTTTTGGTGAATGAAAACAATGTC 1289
||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 1317 GCTTCTATCCGGAAAAGAGCTCTGGAGCTTGTCACTCTTTTGGTGAATGAGAATAATGTC 1376
Query 1290 ACACAACTGACAAAGGAGCTAATTGATTATTTGGAAATCAGCGACGAAGATTTTAAGGAA 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 ACACAACTGACAAAGGAGCTAATTGATTATTTGGAAATCAGCGACGAAGATTTTAAGGAA 1436
Query 1350 GATCTTAGTGCAAAAATTTGTTTTATCGTTGAAAAGTTTTCTCCAGAAAAACTATGGTAC 1409
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1437 GATCTTAGTGCAAAAATTTGTTTTATCGTCGAAAAGTTTTCTCCAGAAAAACTATGGTAC 1496
Query 1410 ATTGATCAGATGCTCAAGGTTCTGTGTGAGGCTGGAAAGTTTGTGAAAGATGATGTGTGG 1469
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 ATTGATCAGATGCTTAAGGTTCTGTGTGAGGCTGGAAAGTTTGTGAAAGATGATGTGTGG 1556
Query 1470 CATGCACTTATTGTTGTCATAAGCAATGCATCAGAGCTTCATGGATATACAGTTAGGGCC 1529
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 CACGCGCTTATTGTTGTCATAAGCAATGCATCAGAGCTTCATGGATATACAGTTAGGGCA 1616
Query 1530 TTGTACAAATCAGTCTTGACTTATTCGGAACAGGAGACCCTTGTCCGAGTGGCGGTATGG 1589
|| |||||| |||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 1617 TTATACAAAGCAGTCTTGACGTATTCGGAACAGGAGACCCTTGTTCGAGTGGCGGTGTGG 1676
Query 1590 TGCATTGGGGAATATGGTGATCTGTTGGTTAACAATGTGGGGATGCTTGGTATTGAAGAT 1649
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1677 TGCATTGGGGAATATGGCGATCTGTTGGTTAACAATGAGGGGATGCTTGGTATTGAAGAT 1736
Query 1650 CCAATAACGGTAACGGAATCTGATGCAGTGGACGTTATCGAGGATGCCATTACTCGCCAT 1709
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1737 CCAATAACGGTAACGGAATCGGATGCAGTGGACGTTATCGAGGAGGCCATTACTCGCCAT 1796
Query 1710 AACTCAGATTCGACTACAAAAGCAATGGCATTGGTTGCTCTACTGAAGTTGTCATCCCGC 1769
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1797 AACTCAGATTCGACTACAAAAGCAATGGCATTGGTTGCTCTACTGAAGCTGTCATCCCGC 1856
Query 1770 TTTCCTTCTATTTCAGAGAGAATTAAAGACATAATTGTGAAGCAGAAAGGAAGCCTTCTC 1829
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 TTTCCTTCTATATCAGAGAGAATTAAAGACATAATTGTGAAGCAGAAAGGAAGCCTTCTC 1916
Query 1830 CTTGAAATGCAGCAGAGAGCTATTGAATACAATTCTATAGTTGACAGGCATAAAAATATC 1889
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1917 CTTGAAATGCAGCAGAGAGCTATTGAATTCAATTCTATAGTTGACAGGCATAAAAATATC 1976
Query 1890 AGGTCTTCTCTGGTTGACAGAATGCCGGTACTGGATGAGGCTACTTTCAATGTGAGGAGG 1949
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 AGGTCTACTCTGGTTGACAGAATGCCGGTACTGGATGAGGCTACTTTCAATGTGAGGAGG 2036
Query 1950 GCCGGCTCTTTTCCTGCATCAGTTTCAACCATGGCCAAGCCTTCAGTTAGCCTTCAAAAT 2009
|||||||||||||||||||||| |||||| ||||| |||||||||||||| |||| ||||
Sbjct 2037 GCCGGCTCTTTTCCTGCATCAGCTTCAACAATGGCAAAGCCTTCAGTTAGTCTTCCAAAT 2096
Query 2010 GGTGTTGAGAAACTTCCTGTCGCTCCTCTTGTGGACTTGCTAGACCTAGATTCTGACGAT 2069
||||||||||||| | ||| |||||||||||||| ||||||||||||| ||| ||||||
Sbjct 2097 GGTGTTGAGAAACCTGTTGTAGCTCCTCTTGTGGATTTGCTAGACCTAGGTTCAGACGAT 2156
Query 2070 ATCATGGCTGCACCTAGTCCATCTGGTACAGATTTCCTTCAGGATCTTCTCGGTGTAGAC 2129
||| ||||| |||||||| |||||||| ||||||| |||||||||||||||||||| |||
Sbjct 2157 ATCCTGGCTACACCTAGTTCATCTGGTCCAGATTTTCTTCAGGATCTTCTCGGTGTTGAC 2216
Query 2130 TTAGGTTCATCGTCAGCACAATATGGTGCAACCCAGGCTCCAA-AAGCTGGCACAGATCT 2188
||||| |||||||| ||||| ||||||||| |||||| | || | |||||||||||
Sbjct 2217 TTAGGAGCATCGTCATCACAACCTGGTGCAACGTTGGCTCCGAGAACC-GGCACAGATCT 2275
Query 2189 GTTGCTGGATATTCTATCAATTGGAACACCTTCTCCTGCACAAAACAGCACATCATCTAT 2248
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2276 GTTGATGGATATTCTATCAATTGGAACACCTTCTCCTGCACAAAACAGCACATCATCTGT 2335
Query 2249 TGGTTTATTATCAATAGCTGACGTTAACAATAATCCCTCAATTGCGCTAGACACACTTTC 2308
|| ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 2336 TGATTTATTATCAACAGCTGACGTAAACAGTAATCCCTCAATTGCGCTAGACACACTTTC 2395
Query 2309 TTCACCAGCTCCACCTCACGTAGCAACAACTTCGTCCACCGGTATGTTTGATTTGCTAGA 2368
||||||||||||||||||||||||||| |||||||||| |||||||||||||||| || |
Sbjct 2396 TTCACCAGCTCCACCTCACGTAGCAACGACTTCGTCCAACGGTATGTTTGATTTGTTACA 2455
Query 2369 TGGTCTTTCTCCAAGCCCATCGAAGGAAGCCACCAATGGTCCAGCTTATGCACCTATTGT 2428
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 2456 TGGTCTTTCTCCAAGCCCATCGAAGGAAGCCACCAATGGTCCAGCATATCCACCAATTGT 2515
Query 2429 TGCATACGAGAGCAGCTCCTTGAAGATTGAGTTCACCTTCTCAAAGACACCAGGGAATCT 2488
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2516 TGCATACGAGAGCAGCTCCTTGAAGATTGAGTTCACCTTCTCAAAGGCACCAGGGAATCT 2575
Query 2489 GCAAACGACAAATGTCCAGGCTACTTTTACTAATTTATCTCCCAATACTTTCACAGATTT 2548
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2576 GCAATCGACAAATGTCCAAGCTACTTTTACTAATTTATCTCCCAATACTTTCACAGATTT 2635
Query 2549 TATATTCCAGGCTGCTGTTCCAAAGTTCCTCCAGCTGCACTTGGATCCAGCTAGCAGTAA 2608
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2636 TATATTCCAAGCTGCTGTTCCAAAGTTCCTCCAGCTGCACTTGGATCCAGCTAGCAGTAA 2695
Query 2609 CACACTCCTGGCAAGCGGTAGTGGTGCCATCACGCAGAATCTAAGAGTCACTAACAGCCA 2668
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2696 CACACTCCCGGCAAGCGGTAACGGTGCCATCACGCAGAATCTAAGAGTCACTAACAGCCA 2755
Query 2669 GCAGGGGAAGAAATCTCTTGTGATGCGCATGAGGATTGGGTACAAACTGAACGGAAAAGA 2728
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2756 GCACGGGAAGAAATCCCTTGTGATGCGCATGAGGATTGGGTACAAACTGAACGGAAAAGA 2815
Query 2729 TGTATTAGAGGAAGGACAAGTCAGCAACTTCCCTCGCGGGTTGTGAAACTCATCGATCAG 2788
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2816 TGTATTAGAGGAAGGACAAGTCAGCAACTTCCCTCGCGGGTTGTAAAACTGATCGATCAG 2875
Query 2789 CCATTGTATTTTCAGCATAAGGACTTGAGTGTTTCTTT-CTATCAAACCCAACTAAAAAA 2847
||||||||||||||||| |||||||||||||||||||| | ||||| ||| |||||||||
Sbjct 2876 CCATTGTATTTTCAGCAGAAGGACTTGAGTGTTTCTTTTC-ATCAA-CCCGACTAAAAAA 2933
Query 2848 -GAAAGACAAGTCTTGCCCAAGCCGTTGATGCAGC---------TTTCTCCTTCCAATT- 2896
||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 2934 AGAAAGACAAGTCTAGCCCAAGCCGTTGATGCAGCAAAAGCAGCTTTCTCCTTCCAATTC 2993
Query 2897 TTTTCATCCGTTTTATGAAACAAGTAGTACTTTGGCCTTTGCTTGTGATTTGAGGTTCTT 2956
|||||||| |||| |||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 2994 TTTTCATCTGTTTCATGAAACAAGTA---CTTTGGCCTTTGTTTGTGATTTGAGGTTCTT 3050
Query 2957 GGGTTTTCTTTTTGTACAAAAGTTTTGATGTTTGGAATCGGAAAGTGGTCAAG-AAGTAG 3015
||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct 3051 GGGGTTTCTTTTTGTACAAAAGTTTTGATGTTTGGAATCGGAAAGCGGTCAAGGAAGAAG 3110
Query 3016 AATTTGTCTCTCATGTCTCTGAGACTATAAAAAAGATG 3053
| |||||||||| ||| ||| |||||| |||||| |||
Sbjct 3111 AGTTTGTCTCTCTTGTGTCTAAGACTACAAAAAACATG 3148
Score = 73.1 bits (39), Expect = 1e-11
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 3079 CATGATGTATCTACTACAGTTACAATTTTCGTCTTGCAA 3117
|||||||||||||||||||||||||||||||||||||||
Sbjct 3145 CATGATGTATCTACTACAGTTACAATTTTCGTCTTGCAA 3183
> Ahg475305 jgi|Araly1|475305|fgenesh2_kg.2__435__AT1G60070.1
Length=2990
Score = 1131 bits (612), Expect = 0.0
Identities = 1657/2150 (77%), Gaps = 117/2150 (5%)
Strand=Plus/Plus
Query 141 ATCATGAATCCCTTTTCTTCTGGTACTCGTTTAAGGGACATGATCCGTGCCATAAGAGC- 199
||||||||||| || ||||| || || ||| | || |||||||| || || ||| | ||
Sbjct 217 ATCATGAATCCGTTCTCTTCCGGCACGCGTCTCAGCGACATGATTCGGGCTATACGTGCG 276
Query 200 ATGCAAAACAGCTGCGGAGGAGCGAGCTGTTGT-AAGAAAGGAGTGTGCCGATATTCGAG 258
| | ||||| ||||| ||||| || |||||||| | |||| |||||||| | || || |
Sbjct 277 A-GTAAAACCGCTGCTGAGGAACGGGCTGTTGTGAGGAAA-GAGTGTGCTGCGATCCGTG 334
Query 259 CATT-GATTAATGAAGATGACCCGCA-TGATCGGCACCGGAACCTTGCGAAA-CTCATGT 315
| || |||||||||| |||||| | | | || | |||||| | || || ||| || ||||
Sbjct 335 C-TTCGATTAATGAAAATGACCAGGACT-ATAGACACCGGGATCTAGC-AAAGCTTATGT 391
Query 316 TTATACACATGCTGGGTTATCCCACACACTTTGGGCAGATGGAGTGCTTGAAGCTAATTG 375
| || || ||||| |||||||||||||| |||||||||||||| || |||||| ||||||
Sbjct 392 TCATTCATATGCTTGGTTATCCCACACATTTTGGGCAGATGGAATGTTTGAAGTTAATTG 451
Query 376 CATCTCCTGGATTTCCAGAGAAGAGGATTGGATATCTAGGGCTAATGTTGCTTCTTGATG 435
| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 452 CTTCTCCTGGATTTCCAGAGAAGAGGATTGGTTATCTTGGATTAATGTTGCTTCTTGATG 511
Query 436 AGAGACAAGAAGTGTTGATGCTTGTCACAAATTCGTTAAAACAAGATCTTAATCACT-CG 494
| || |||||||| || ||||| ||||| || ||||| || |||||||| ||||| | ||
Sbjct 512 AAAGGCAAGAAGTATTAATGCTGGTCACTAACTCGTTGAAGCAAGATCTGAATCA-TACG 570
Query 495 AACCAGTATGTTGTAGGACTTGCTCTCTGTGCTTTAGGGAATATTTGTTCAGCAGAAATG 554
||||| || |||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 571 AACCAATACATTGTGGGGCTTGCTCTCTGTGCTTTAGGAAATATTTGTTCAGCAGAAATG 630
Query 555 GCCCGTGATCTTGCGCCAGAAGTAGAAAGATTAATCCAGTTTCGTGACCCTAATATCCGA 614
|| |||||||| || || ||||| ||||||||| | || ||||| || || ||||| ||
Sbjct 631 GCTCGTGATCTCGCCCCTGAAGTTGAAAGATTACTTCAATTTCGGGATCCAAATATACGC 690
Query 615 AAGAAGGCGGCGCTTTGCTCTACTA-GAATAATAAGGAAAGTTCCAGATCTAGCAGAAAA 673
||||| || || |||||| | | || | || || || |||||||| ||||| | || ||
Sbjct 691 AAGAAAGCAGCTCTTTGCGCCA-TAAGGATCATCAGAAAAGTTCCGGATCTTTCTGAGAA 749
Query 674 CTTCGTAAATGCT-GCTGCTTCCTTGCTTAAAGAAAAGCATCATGGGGTTCTTATAACAG 732
||| | ||| || | |||| | || || ||||||||||||||||| ||||| || || |
Sbjct 750 CTTTATTAATCCTAG-TGCTGCTTTACTCAAAGAAAAGCATCATGGTGTTCTCATTACGG 808
Query 733 GAGTTCAACTTTGTT-ATGAATTATGCACGATTAATGAT--GAAGCCCTAGAGTACTTCA 789
||||||| ||||| | ||| | || | | | | | | |||||||| || || |||
Sbjct 809 GAGTTCACCTTTGCACA-GAAATCTGTAA-AGTCA-GTTCCGAAGCCCTTGAATATTTCC 865
Query 790 G-AACGAAATGCACAGAGGGACT-GATAAAAACTTTGAGGGATATTACTAATAG-CGCAT 846
| || ||||||||||||||| || | | ||||| | || |||||| | || || | |||
Sbjct 866 GGAA-GAAATGCACAGAGGG-CTTGGTTAAAACCCTAAGAGATATTGCAAACAGTC-CAT 922
Query 847 AT-CAGCCTGAGTATGATGTTGCAGGGATCACAGACCCTTTTCTCCACATACGG-TTGCT 904
|| || ||||||||||| || || || || || || || ||||| ||||| | | |||||
Sbjct 923 ATTCA-CCTGAGTATGACGTCGCTGGAATTACGGATCCATTTCTTCACAT-CAGATTGCT 980
Query 905 CAGGCTCTTGCGTGTTTTAGGCCAGGGTGATGCTGATGCTAGTGATT-TGATGACA-GAT 962
|| || ||||||||||| ||||| || ||||| || || ||||| | | |||| | |||
Sbjct 981 CAAACTGTTGCGTGTTTTGGGCCAAGGCGATGCAGAGGCCAGTGACTGT-ATGA-ATGAT 1038
Query 963 ATACTTGCACAGGTGGCAACAAAAACTGAATCAAACAAAAACGCAGGGAATGCGGTACTC 1022
|||||||| ||||||||| ||||||| || ||||||||||| ||||| ||||| | ||
Sbjct 1039 ATACTTGCTCAGGTGGCATCAAAAACCGAGTCAAACAAAAATGCAGGCAATGCTATCCTA 1098
Query 1023 TATGAGTGTGTTGAAACAATCATG-GCCATTGAAGACACCAATAGCTTGCGTGTGCTTGC 1081
|| || |||||| |||| || ||| || || ||||| | | | || || || |||||
Sbjct 1099 TACGAATGTGTTCAAACGATAATGAGC-ATCGAAGAAAATGGTGGTTTACGAGTCCTTGC 1157
Query 1082 TATCAATATCTTGGGAAGATTCTTATCTAACCGCGACAATAACATCAGATATGTTGCATT 1141
|||||||||||||||| |||||| || ||||| || |||||||||||||| || |||||
Sbjct 1158 AATCAATATCTTGGGAAAATTCTTGTCCAACCGAGATAATAACATCAGATACGTAGCATT 1217
Query 1142 AAACATGCTGATGAAAGC-TATCACT-TTCGATGATCAAGCAGTGCAAAGGCACAGAGTT 1199
|||||||||||||| | | | | ||| || ||| ||||| || || |||||||||| |
Sbjct 1218 AAACATGCTGATGAGATCCT-TAACTGTT-GATTCCCAAGCGGTTCAGAGGCACAGAGCT 1275
Query 1200 ACAATTTTGGAATGTGTGAAGGACCCAGATGCTTCTATCCGGAAAAGAGCTCTTGAGCTT 1259
||||| |||| ||||| ||||| |||||||||| || | |||||| || |||||||||
Sbjct 1276 ACAATCCTGGAGTGTGTTAAGGATTCAGATGCTTCAATTCAGAAAAGGGCACTTGAGCTT 1335
Query 1260 GTC-ACTCTTTTGGTGAATGAAAACAATGTCACA-CAACT-GACAAAGGAGCTAATTGAT 1316
| || ||| |||||||||| || || || | | | ||| | |||||||||| || ||
Sbjct 1336 ATTTAC-CTTCTGGTGAATGAGAATAACGTGA-AGCCACTAG-CAAAGGAGCTTATAGAA 1392
Query 1317 TATTTGGAAATCAGCGA-CGAAGATTTTAA-GGAAGATCTTAGTGCAAAAATTTGTTTTA 1374
||||||||| | ||||| | |||||||||| ||| ||||||| |||||| || || | |
Sbjct 1393 TATTTGGAAGTAAGCGAAC-AAGATTTTAAAGGA-GATCTTACTGCAAAGATATGCTCCA 1450
Query 1375 TCGTTGAAAAGTTTTCTCCAGA-AAAACTATGGTACATTGATCAGATGCTCAAGGTTCTG 1433
| |||||||||||| ||||||| |||| | |||||||||||||| ||||| ||||||||
Sbjct 1451 TTGTTGAAAAGTTTGCTCCAGAGAAAA-TCTGGTACATTGATCAAATGCTAAAGGTTCTA 1509
Query 1434 T-GTGAGGCTGGAAAGTT-TGTGAAAGATGATGTGTGGCATGCACTTATTGTTGTCATAA 1491
| | |||||||||| || ||||||||| ||||| ||||| ||||| |||||||| ||||
Sbjct 1510 TCG-GAGGCTGGAAC-TTATGTGAAAGAGGATGTATGGCACGCACTGATTGTTGTAATAA 1567
Query 1492 GCAA-TGCATCAGAGCTTCATGGATATACAGTTAGGGCCTTGTACAAATCAGT-CTTGAC 1549
||| ||| | || || ||||| || || || ||||| ||||||| | || | | | ||
Sbjct 1568 -CAAATGCCCCTGATCTCCATGGGTACACTGTCAGGGCTTTGTACAGAGCATTACAT-AC 1625
Query 1550 TTATTCGGAACAGGAGACCCTTGTCCGAGTGGCGGTATGGTGCATTGGGGAATATGGTGA 1609
| || |||||||| || ||||| || || || |||||||||| || ||||||| |||
Sbjct 1626 ATCTTTTGAACAGGAAACGCTTGTGCGCGTTGCAATATGGTGCATAGGAGAATATGCTGA 1685
Query 1610 TCTGTTGGTTAACAATG-TGGGGATGCTTGGTATT-GAAGATCCAATAACGGTAACGGAA 1667
||||||||||||||||| ||| ||||||| || |||||||||||||||||||| |||
Sbjct 1686 TCTGTTGGTTAACAATGCTGGA-ATGCTTGAC-TTAGAAGATCCAATAACGGTAACAGAA 1743
Query 1668 TCTGATGCAGTGGACGTTATCGAGGA-TGCCATTACTCGCCATA-ACTCAGAT-TCGACT 1724
|| ||||||||||| ||| ||||| | ||| |||| | |||| | || ||| || ||
Sbjct 1744 TCAGATGCAGTGGATGTTGTCGAG-ACTGCTATTAAGCATCATACA-TCGGATGTC-ACG 1800
Query 1725 ACAAAAGCAATGGCATTGGTTGCTCTACTGAAGTTGTCATCCCGCTTTCC-TTCTAT-TT 1782
|| || |||||| || | ||||||| | ||| | |||||||| ||||| |||| | ||
Sbjct 1801 ACTAAGGCAATGTCACTCATTGCTCTGTTAAAGATCTCATCCCG-TTTCCCTTCT-TGTT 1858
Query 1783 CAGAGAGAATTAAA-GACATAATTGTGAAGCAGAAAGGAAGCCTTCTCCTT-GAAATGCA 1840
||||||| ||||| | || || | | || | ||||| ||| || || || ||| ||||
Sbjct 1859 CAGAGAGGGTTAAAAGT-ATTATAGGGCAGAACAAAGGTAGCTTTGTC-TTAGAACTGCA 1916
Query 1841 GCAGAGAGCTATTGAATACAATTCTA-T-AGTTGACAGGCATAAAAATATCAGGTCTTCT 1898
|| ||| | | |||| || ||| | | | || | | |||| | ||||| || ||| |
Sbjct 1917 ACAAAGATCCCTGGAATTCAGTTC-AGTTA-TTCAAAAGCATCAGAATATAAGATCTGCC 1974
Query 1899 CTGGTTGACAGAATGCCGGTACTGGATGAGGCTAC-TTTCAATGTGA-GGAGGGCCGGCT 1956
|||||||| ||||||||||| || |||||||| || ||| | || || |||| || || |
Sbjct 1975 CTGGTTGAAAGAATGCCGGTCCTTGATGAGGCAACATTT-AGTG-GAAGGAGAGCTGGTT 2032
Query 1957 CTTTTCCTGCATCAGTTTCAAC--CATGGCCAAGCCTTCAG-TTAGCCTTCAAAATGGTG 2013
|||| || ||| | || ||||| | ||| || | | | | ||||| ||| ||| ||||
Sbjct 2033 CTTTACCAGCAGCTGTGTCAACTTC-TGGAAAATC-TCC-GCTTAGCATTCCAAACGGTG 2089
Query 2014 TTGAGAAA-CTTCCTGTC-GCTCCTCTTGTGGACTTGCTAGACCTAGATTCTGACGATAT 2071
||| ||| || | | | |||||||| || || || || ||||| | ||||| ||||
Sbjct 2090 TTGCTAAAGCTGC-TC-CAGCTCCTCTAGTAGATTTACTCGACCTTGGCTCTGATGATA- 2146
Query 2072 CATGGCTGCACCTAG-TCCATCTGGTA-CAGA-TTTCCTTCAGGATCTTCTCGGTGTAGA 2128
| | ||||||||| ||| || ||| || | |||| |||| |||||||| ||||| ||
Sbjct 2147 C-TC-CTGCACCTACCTCC-TCCAGTAACA-ACTTTC-TTCAAGATCTTCTTGGTGTTGA 2201
Query 2129 CTTAG-GTTCATCGT-CAGCACAATATGGTGCAACCCAGGC-TCCAAAAGCTGGCACAGA 2185
||| | || | | |||||||| |||||| | ||| | || ||| |||||| | ||
Sbjct 2202 TTTAACG--CAGCCTTCAGCACAACCTGGTGCCATGCAGCCATCTAAA-GCTGGCGCGGA 2258
Query 2186 TCTG-TTGCTGGATAT-TCTATCAATTGGAACACCTTCTCCTGCACAAAA 2233
| | || ||||| | | | ||||||||||| ||| | |||| |||||
Sbjct 2259 TATTCTTA-TGGATCTGT-TGTCAATTGGAACTCCTGCCCCTGTGCAAAA 2306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118651113175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5