BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23935.1
Length=2211
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313246 jgi|Araly1|313246|fgenesh1_pm.C_scaffold_1002026 745 0.0
> Ahg313246 jgi|Araly1|313246|fgenesh1_pm.C_scaffold_1002026
Length=1971
Score = 745 bits (403), Expect = 0.0
Identities = 992/1259 (79%), Gaps = 109/1259 (9%)
Strand=Plus/Plus
Query 1001 CATGCCCGATAGCCCCTATAAGGTCTGATGCGCTTGAATCCGTTTCAAAGGATTGTAAGC 1060
|||||| || || ||||| ||||||||| |||||||| || |||||||||||||||| ||
Sbjct 770 CATGCCAGAGAGTCCCTAAAAGGTCTGACGCGCTTGACTCAGTTTCAAAGGATTGTAGGC 829
Query 1061 TAAACCTAGATGATACAGGAATATGCGATCTAACCGACAAGCAAGTTCAAAGTATTCTGG 1120
|| |||||||||| |||||||||||| ||||| ||| ||||||||||||| ||||||||
Sbjct 830 TAGACCTAGATGAAACAGGAATATGCAATCTAGGCGAGAAGCAAGTTCAAAATATTCTGG 889
Query 1121 ATTATTCAAAATATCATCAAGTTTCTCGTAA-CAAAAATGGTGCATGTGTGTTAAATGAC 1179
||||||||| | ||| |||||||| |||| | || | |||||||||||||||||||||
Sbjct 890 GTTATTCAAATTGTCAAGAAGTTTCTGGTAATCGAAGA-GGTGCATGTGTGTTAAATGAC 948
Query 1180 AAT-GATGACATCGCTATGCTCGGTTGGCAAATGAAAAAATCGGACTTAAGTTTCCT-A- 1236
||| | || ||||||||||||| ||| ||||||| |||| ||||| | | ||||| |
Sbjct 949 AATGGCTG-CATCGCTATGCTCAGTTATCAAATGAGAAAACCGGACAT-A--TTCCTAAC 1004
Query 1237 GAGACGGCTGGGGAACAGGGTAGATCGGGTGAGGTTAGAGATCAACTTTT-TCACCTTCT 1295
| || |||||| || |||||| |||||| ||||||||| ||||| |||| |||||||||
Sbjct 1005 TA-AC-GCTGGGAAAAAGGGTATATCGGGGGAGGTTAGACATCAA-TTTTATCACCTTCT 1061
Query 1296 CTGCTGGGCCTACGCAGGCTCTGATCTAGTTAGTTACCAGAGATTGTTACAG-AAGTGGG 1354
||||||| |||||||| |||||||||||| |||| |||||| ||| ||| | |||||||
Sbjct 1062 CTGCTGGATCTACGCAGCCTCTGATCTAGTCAGTTGCCAGAGGTTGGTAC-GAAAGTGGG 1120
Query 1355 AGAGGAA-GACACTTCCTCTTTGTCCTTGGTATTTATGTGCCTTTTGCGAGCCAGAAAAA 1413
| | || | ||||||||||||||||||||| | ||||| |||||||| || | ||||
Sbjct 1121 A-AAAAAGGTGGCTTCCTCTTTGTCCTTGGTATCTCTGTGCGTTTTGCGATCCTGCAAAA 1179
Query 1414 CTTGGAGAAGAGGAAATACTTGATAGAAATGGAGAAAAGAAAATACTTGTTGAT-A-GAC 1471
||| | ||| ||| | || || | ||| || | || | ||| | ||
Sbjct 1180 CTT-G-GAA-AGG----A--TG--AG--A--GAG--CTCAAGA-AC--G-GGATAAGGA- 1217
Query 1472 ATGGTCGTGTACATCATTGCTATGGAGGTAC-A-ATTGAAAAAGCATTATGCCACGTACA 1529
| |||||||||||||| ||||||||||| | | || || ||||| ||||||||||| ||
Sbjct 1218 A-GGTCGTGTACATCACTGCTATGGAGG--CGATATAGAGAAAGCTTTATGCCACGTTCA 1274
Query 1530 GAGC-CATGGAATTCCAAGGGATGTTGTCA-CCAATTTCCTTTGCACGGATTATCATCCC 1587
| | ||||| ||||||| || |||| | | ||||| ||||| || ||| |||||||
Sbjct 1275 -ATCTTATGGAGTTCCAAGAGAACTTGTGAGCAAATTT-CTTTGTACAGATCATCATCCA 1332
Query 1588 CCAAGTGCAGATGAACCTGATATGGAAAGAAGAAAAATTA-AAGGATT-TCGAAAAATCA 1645
||||||||||| |||||||| |||||||||||||| ||| || | || ||||||||||
Sbjct 1333 CCAAGTGCAGAGGAACCTGACATGGAAAGAAGAAAGCTTATAA-G-TTCTCGAAAAATCC 1390
Query 1646 ACACTTGGAAGGATGTTGTAG-AGGCGCTTCAAAAGCAGCAGAT-AGTGGGGGCAGATTT 1703
||||||||||||||||||| | || ||||||||||||||||| | |||||||||||||||
Sbjct 1391 ACACTTGGAAGGATGTTGT-GCAGACGCTTCAAAAGCAGCAG-TCAGTGGGGGCAGATTT 1448
Query 1704 GCTTAATTACAGTCAACTGATGATGACTTCAGGAAAGTATATTTACAAAGGTCCCATGTC 1763
|||| |||||| | | | ||||||| |||| ||| |||||||| |||||| |||||
Sbjct 1449 GCTTCATTACACTGGA-T--TGATGACACCAGGTGAGTTTATTTACAGAGGTCCAATGTC 1505
Query 1764 ACG-AATGAG-TGTTTACGTCGGATATCACGCCGTAGTAATAG-AGCAGATTAAGAAAAT 1820
||| ||| || || || ||||||||||||||| ||||| |||| || |||||||||||||
Sbjct 1506 ACGAAAT-AGTTGGTT-CGTCGGATATCACGCTGTAGTGATAGAAG-AGATTAAGAAAAT 1562
Query 1821 GAATGGAGAATGGGTTGCTGTTTGCAAAATGAGCAA-TGGCACGTTGGTGGCTGATTATG 1879
| | ||| |||||||||||||||||||||||||| || | | |||||||||| ||
Sbjct 1563 GGGTCAAGAGTGGGTTGCTGTTTGCAAAATGAGCAACGGGGA-GGAAGTGGCTGATTGTG 1621
Query 1880 GATACGCTTATGTTTC-CATAGAAGTTCAGTACATGCCTGTTGGTGCATCTGATCTGAAA 1938
|||| || || || || | ||||||| |||||||| ||||||||||||| |||||| |
Sbjct 1622 GATATGCGTACGTATCTC-TAGAAGTCCAGTACATTACTGTTGGTGCATCCGATCTGGGA 1680
Query 1939 AG-GAAGAGGATACGAGGTTC-AGACCATCCAATGC-ATCTCCTTACCAATTTCATCATC 1995
|| || | | |||| ||| ||| | |||| | |||||||| |||||||||| |||
Sbjct 1681 AGCGACTTTG-TTCGAGCTTCAAGA-AAGCCAA-CCTATCTCCTTTCCAATTTCATGATC 1737
Query 1996 GTAGACATGGTGGAGGCAGATGAGAATGATAGAA-AGGATGCAGA-A----AG-TGAAG- 2047
|| || ||||| ||||| ||||| || || | || |||||||||| | | |||||
Sbjct 1738 GTTGAGATGGTTGAGGCCGATGAAAAAGACA-AAGAGGATGCAGAGAGTGGGGATGAAGA 1796
Query 2048 A-ATC-AG---AAG--A-AAAAG--ACTCAGAAAATG----AGGAGGAA-GAGGATTATA 2092
| | | || ||| | ||||| ||| | |||||| ||||| || || | | |
Sbjct 1797 AGAACAAGATAAAGATACAAAAGATACTGAAAAAATGTCAAAGGAGAAACCAGAAAAAGA 1856
Query 2093 TTCCTAAAGCAA-AA--AGAGGTCTTACTAAAGATCCTAAACCAAAAAGAAGTCGTACTG 2149
|| |||| || || || | | || | ||||||||||||||||||||||||||
Sbjct 1857 -TCGAAAAG-AAGAACCCGAAG-AGAAATATA-CTCCTAAACCAAAAAGAAGTCGTACTG 1912
Query 2150 AAGATCCAACAATGGTAAGCATCAAAGTGGCAAT-CTCACTTCATCGTTTGCTCCATGA 2207
|||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1913 AAGATCCAACAATGGTGAGCATCACTGTGGCAATTCTCACTTCATCGTTTGCTCCATGA 1971
Score = 444 bits (240), Expect = 1e-123
Identities = 301/331 (91%), Gaps = 2/331 (1%)
Strand=Plus/Plus
Query 393 AAAGAGTCTACAAAAGGAAAGTGAAGCAG-ACTTGCAACGACTTGCACAATATTTTGAAA 451
|||||| |||||||||||||||||||||| || || ||||||||||| |||||||||||
Sbjct 267 AAAGAGCCTACAAAAGGAAAGTGAAGCAGAAC-TGAAACGACTTGCAGAATATTTTGAAG 325
Query 452 CAAAGGCTGGTTTGGATACATTTGATGTTTCAGATGCACATTATGTTGACAGGTTTATAT 511
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 326 TAAAGGCTGGTTTGGATACATTTGATGTTTCAGATGCAGACTATGTTGACAGGTTTATAT 385
Query 512 CATGCCTGCTAATGGCTGTTCCATTCTTTGCGAGAGGTGCTCCAAGCAGCAAGTATTTTG 571
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 386 CATGCCTGCTAATGGCTGTTCCATTCTTTGCGAGAGGTGCTCCAAGGAGCAAGTATTTTG 445
Query 572 AGTTCATGAACCGTCACCATATCTTGCATCATTTTGACAAGCTGACAGAGCATAGGAAGC 631
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 446 AGTTCGTGAACCGTCACCATATCTTGCATGATTTTGACAAGCTGTCAGAGCATAGGAAGC 505
Query 632 TTGATTTTCTCAAATCTCTTGCTGAAATGTCGTCAGACACAACAGCTCAAGCAGCAGGCC 691
|||||||||||| | |||||||||| || || || ||||||| | ||||||||||||
Sbjct 506 TTGATTTTCTCAGAGCTCTTGCTGAGATTTCATCTTTCACAACAAATGAAGCAGCAGGCC 565
Query 692 AGATGCTTCCATCGATAATTGAGCTCTTaaa 722
||||| |||| || ||| ||| ||||||||
Sbjct 566 AGATGATTCCCTCAATAGTTGTCCTCTTAAA 596
Score = 383 bits (207), Expect = 3e-105
Identities = 249/270 (92%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 31 ATGTCAAACCCGGAAATGAACAAACTTCTCAACAATCTTGAGCTCAAAAAACTCTTGGGA 90
|||||||| |||||| |||||||||||||| |||| |||||||| ||||||||||||||
Sbjct 1 ATGTCAAATCCGGAAGTGAACAAACTTCTCCACAAGCTTGAGCTTGAAAAACTCTTGGGA 60
Query 91 AAATCTGAGGTTATATCTATCTGCGACATTGAGCTGATATGCAAACATCAACCTGAGCTT 150
||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 61 AAATCTGAGGTTAAATCTATCTGCGACATCGAGCTCATATGCAAACATCAACCTGAGCTT 120
Query 151 ATATCTAAGATTATTGATGTTCTTGTCGAATATCTAAATACTGAGAAACCGGTGGAGTGT 210
| ||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| |
Sbjct 121 AGATCTAAGATCATTGATGTTCTTGTCAAATACCTAAATACTGAGAAACCGGTGGAGTCT 180
Query 211 GATGCCGTGCAAGAGGTTTTTATGGCGATGGTTCATGTTGATAAAGAAGCATCTTTGACT 270
||||| |||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct 181 GATGCTGTGCAAGAGGTTTTTATGGCGATGTTTCATCTAGATAAAGAAGCATCTTTGACT 240
Query 271 GCAATGTTGAACCATCTTGCTAATTTCAAG 300
||||||||||| ||||||||| |||| |||
Sbjct 241 GCAATGTTGAAGCATCTTGCTGATTTAAAG 270
Score = 161 bits (87), Expect = 2e-38
Identities = 114/127 (90%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 814 AAGGCTCCAGCTGCAGCAACAGATTTTTGCAACGAAGAATTTATGTTGAGATTGGATTGT 873
||||||||||||||||||||| | | ||||||| ||||||| ||| ||||||||||||||
Sbjct 595 AAGGCTCCAGCTGCAGCAACACAATGTTGCAACAAAGAATTCATGCTGAGATTGGATTGT 654
Query 874 GTTAGATCTATAACTCGGGCAAGATTGAAGAAACTAGACACAACCTTAGC-TAAGGACGA 932
|||||||||||||||||||||||| |||||| ||||| ||||||||| || |||||| ||
Sbjct 655 GTTAGATCTATAACTCGGGCAAGAATGAAGATACTAGCCACAACCTT-GCCTAAGGATGA 713
Query 933 TAAAAAG 939
| |||||
Sbjct 714 TGAAAAG 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83227185325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5