BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G23965.1

Length=1065
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg912257 jgi|Araly1|912257|Al_scaffold_0001_2511                    359    3e-98
  Ahg472652 jgi|Araly1|472652|fgenesh2_kg.1__2606__AT1G23900.2         261    8e-69


> Ahg912257 jgi|Araly1|912257|Al_scaffold_0001_2511
Length=246

 Score =  359 bits (194),  Expect = 3e-98
 Identities = 209/216 (97%), Gaps = 1/216 (0%)
 Strand=Plus/Plus

Query  703  GAGAGCAA-AGGAAGCAGACGAAGAAGAAAACGGGTCGTGGGTCAGGATCCGGGTCGATC  761
            ||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  31   GAGAGGAATAGGATGCAGACGAAGAAGAAAACGGGTCGTGGGTCAGGATCCGGGTCGATC  90

Query  762  CAGATAAAGATGAGGAAACTCCGAGTGCTTATACCGGGTGGGCGAAGATTGAACCAACCG  821
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  91   CAGATAAAGATGAGGAAGCTCCGAGTGCTTATACCGGGTGGGCGAAGATTGAACCAACCG  150

Query  822  GATCTGCTTCTAACAAAGACTGCTGATTATATTATGCATTTGGAGTTGAGGATTAGGTTT  881
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  151  GATCTGCTTCTATCAAAGACTGCTGATTATATTATGCATTTGGAGTTGAGGATTAGGTTT  210

Query  882  CTCAAAGCCATCTCCGATATCTACTCACTCTCTTAA  917
            ||||||||| ||||| ||||||||||||||||||||
Sbjct  211  CTCAAAGCCCTCTCCAATATCTACTCACTCTCTTAA  246


> Ahg472652 jgi|Araly1|472652|fgenesh2_kg.1__2606__AT1G23900.2
Length=3183

 Score =  261 bits (141),  Expect = 8e-69
 Identities = 196/221 (89%), Gaps = 10/221 (5%)
 Strand=Plus/Minus

Query  1     GGAAGGAGAAAGCCGGTTTTGCTCCATCAACGGATTGGGGAAGACTTGTCTTTC-CTTTT  59
             ||||||||||||| | ||||||| ||||||||| |||||  |||||||||||||  ||||
Sbjct  2988  GGAAGGAGAAAGCTGCTTTTGCTGCATCAACGGCTTGGGCTAGACTTGTCTTTCTTTTTT  2929

Query  60    TAGTCGGGTTGATGATGATAAACACTCAAGTCCTTGTGCTGAAAAGACAATGGCTGATCG  119
             |||||||||||||||  | |||||||||||||||| ||||||||| ||||||||||||||
Sbjct  2928  TAGTCGGGTTGATGAAAAGAAACACTCAAGTCCTTCTGCTGAAAATACAATGGCTGATCG  2869

Query  120   ----G---CACAACCCGCGAGGGAAGTTGCTGACTTGTCCTTCCTCTAATACATCTTTTC  172
                 |    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2868  ATCAGTTTTACAACCCGCGAGGGAAGTTGCTGACTTGTCCTTCCTCTAATACATCTTTTC  2809

Query  173   CGTTCAGTTT-TACCCAATCCTAAT-CGCATCACATGGGAT  211
             |||||||||| ||||||||||| || ||||||||| |||||
Sbjct  2808  CGTTCAGTTTGTACCCAATCCTCATGCGCATCACAAGGGAT  2768



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39647833680


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5