BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23970.2
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472658 jgi|Araly1|472658|fgenesh2_kg.1__2612__AT1G23970.1 1454 0.0
Ahg921905 jgi|Araly1|921905|scaffold_103186.1 189 4e-47
> Ahg472658 jgi|Araly1|472658|fgenesh2_kg.1__2612__AT1G23970.1
Length=1265
Score = 1454 bits (787), Expect = 0.0
Identities = 1101/1245 (88%), Gaps = 51/1245 (4%)
Strand=Plus/Plus
Query 54 CGGAGGAGGAGTCCCTTTCTG-CGGCGGAGGAGGGTTACAATGTACAGAGAGACTATTGG 112
||||||||||||| ||||| | ||| |||||||||||||| |||||||||||||| ||||
Sbjct 60 CGGAGGAGGAGTCTCTTTC-GCCGGGGGAGGAGGGTTACAGTGTACAGAGAGACTTTTGG 118
Query 113 CGTCAAGCGGAGGAATCCGATGGTTTCGATATAGAGAACATTAAACTACCACCAGGTATG 172
|||||||||| | ||||||||||||||||| |||||||| |||||| |||||||||||||
Sbjct 119 CGTCAAGCGGCGAAATCCGATGGTTTCGATTTAGAGAACGTTAAACGACCACCAGGTATG 178
Query 173 CATGGACG-GGTCATGGGACTGATTACCTATAACTGTCAACTTTGTTACCGTTATCCGTT 231
||||| | |||||| ||||||||| ||||| |||||||||||| | | |||||||| |
Sbjct 179 AATGGA-GTGGTCATTGGACTGATTCCCTATTACTGTCAACTTTATAAGCGTTATCCATA 237
Query 232 TCCTGTCTTGGTCAAACTTTATGCTAAGTTTGGGCTTCATCGTTACAATTTGATCAAGGG 291
|| | |||||||| | |||| ||||||| ||||||||||||||||||||||| |||||||
Sbjct 238 TCGTATCTTGGTCGACCTTTTTGCTAAGGTTGGGCTTCATCGTTACAATTTGTTCAAGGG 297
Query 292 AACAAGCTTCGAGCTCGCTGCCTTAATGAAGTTCAACATGTTACAAAACTATATGTCCTC 351
||||||||||||| |||||||| ||||||| |||||||||||||| ||||||||||||||
Sbjct 298 AACAAGCTTCGAGGTCGCTGCCCTAATGAAATTCAACATGTTACAGAACTATATGTCCTC 357
Query 352 TTTCTACATGACTCTGCTTGCACATGATCCCGATCCAGCTGCTAGCTCATCGCAGAAAAC 411
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 358 TTTCTACATGACTCTGCTTGCACATGATCCCGATCCAGCTGCTAGCTCATTGCAGAAAAC 417
Query 412 CTTTCAGGTTCGAGTTGATGAACAACAATT-TGGCACTTTGGGTATAAAC-TGCTCCATT 469
||||||||||||||||||||||||| ||| |||||||||| ||| ||| |||||||||
Sbjct 418 CTTTCAGGTTCGAGTTGATGAACAA-GATTATGGCACTTTGCATAT-AACGTGCTCCATT 475
Query 470 GCTAGACCTAAACACGAAGGTGACTTACTTGAAGTGTCCACC-AAGACGCCCTTCATACC 528
||||||||| | || | | | |||||||||||| || |||||||||| |||
Sbjct 476 GCTAGACCT----A--AA---G-C---C--GAAGTGTCCACCGAA-ACGCCCTTCAGACC 519
Query 529 TCACTTTCATGGTGGCGCATTGGGCGATGGTATATTCAAAGGTGAATTGCCTGATTGTCT 588
||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| |
Sbjct 520 TCACTTTCATGGTGGCGCACTGGCCGATGGTATCTTCAAAGGTGAATTGCCTGATTGGCC 579
Query 589 CTCAGATGATGCTTTGAATGCACTGATGGAGGCTGTCTCCAAAGATGAATTGCCTGAG-C 647
|||||||||||||||||||| || || | | | | | | | || | || | || |
Sbjct 580 CTCAGATGATGCTTTGAATG-ACGGA-AAACGAT-T-T--TATG-TG-AGTGGC-AAGCC 630
Query 648 -ATGTCTTAGATGATGCTTTGT-ATGCACGGGCCG-GTGGTATCTTCCAAGGTGAATTGC 704
||| || ||| | || ||| ||||||| || |||||||||| ||||||||||||
Sbjct 631 AATG-ATTGGAT--TTCTATGTGGCGCACGGG-CGTATGGTATCTTCAAAGGTGAATTGC 686
Query 705 CTGATTGGCCCTCAGATGATGCTTTGAATGATGGAAAACGATTTTACATGCTGAAGGAAT 764
||||||||||||||||||||||||| ||||| ||||||||||||||| || | |||||||
Sbjct 687 CTGATTGGCCCTCAGATGATGCTTTCAATGACGGAAAACGATTTTACCTGGTAAAGGAAT 746
Query 765 CAGAGTGGCAGGCCACTGATTGGATTTCTATGTATTTGGAACTTGTAATTACTACAACTG 824
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 CAGAGTGGCAATCCACTGATTGGATTTCTATGTATTTGGAACTTGTAATTACTACAACTG 806
Query 825 ATAGGTCGATCACTGAGACA-GTTCAGAAG-CCAGAAGTTCTGTCCAAGTTGGAGATTGT 882
|||||||||||||||| || || |||||| || |||||||||||| |||||||||||||
Sbjct 807 ATAGGTCGATCACTGAAACGCGT-CAGAAGACC-GAAGTTCTGTCCCAGTTGGAGATTGT 864
Query 883 GAAAGTGGCGATAGAAACTGCTACCAAAGATGAGGAGCCGTCTAATGAGAGACTCAAAGC 942
||||||||||||||||||||||| |||||| ||||||| | |||||||||||||| ||
Sbjct 865 GAAAGTGGCGATAGAAACTGCTAATGAAGATGTGGAGCCGCCGAATGAGAGACTCAAGGC 924
Query 943 CTACAGGGCACATTTCTACATAACGTTTAAGGGCTTGGCAGAGCCTCGAGCCCCTCGGCA 1002
| | || |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 CAAAAGTGCACATGTCTACATAACGTTTAAGGGCTTGGCAGAGCCTCGAGCCCCTCGGCG 984
Query 1003 GGTTTTTGAGATTGGGGAGCATGTTGAACGCCAAGCTATAGTTAGAAGAGTCATGGGCCA 1062
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 985 GGTTTTTGAGAATGGTGAGCATGTTGAACGCCAAGCTATAGTTAGAAGAGTCATGGATCA 1044
Query 1063 TAGAGGAGACTTGACTCTCAAGGGTAAGCTTTGTGGTGGTCAATATATCAAAAGGCGTTC 1122
| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1045 CACAGGATACTTGACTCTCAAGGGTAAGCTTTGTGGTGGTCAATATATCAAAAAGCGTTC 1104
Query 1123 TCTGGCTCTCAAGAGTGGAGAAGAGTCCCCGAATTGTAAAAAGCAAACTCGCGTCGGCTA 1182
||||||||||||||||||||||||||||| | |||||||||||||| |||| ||||||||
Sbjct 1105 TCTGGCTCTCAAGAGTGGAGAAGAGTCCCAGGATTGTAAAAAGCAAGCTCGTGTCGGCTA 1164
Query 1183 GGCGTTTGTATACATGGCCGTCTGCGTAATGTTAAGATCCATTT-GAAAATGTGGATCAG 1241
||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1165 GGCGTTTGTATACATGGGCGTCTGCGTAATGTTAAGACCCATTTTGAAAATGTGGATCAG 1224
Query 1242 ATAATAAACTAAGCTATTAATTTTGTGCGTTTGGATTCTTTGATT 1286
|||||||||||||||||| || |||||||||||||||||||||
Sbjct 1225 ATAATAAACTAAGCTATT--TT--GTGCGTTTGGATTCTTTGATT 1265
Score = 126 bits (68), Expect = 4e-28
Identities = 76/80 (95%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 671 GCACGGGCCGGTGGTATCTTCCAAGGTGAATTGCCTGATTGGCCCTCAGATGATGCTTTG 730
|||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 536 GCACTGGCCGATGGTATCTTCAAAGGTGAATTGCCTGATTGGCCCTCAGATGATGCTTTG 595
Query 731 AATGATGGAAAACGATTTTA 750
||||| ||||||||||||||
Sbjct 596 AATGACGGAAAACGATTTTA 615
> Ahg921905 jgi|Araly1|921905|scaffold_103186.1
Length=998
Score = 189 bits (102), Expect = 4e-47
Identities = 331/433 (76%), Gaps = 49/433 (11%)
Strand=Plus/Plus
Query 188 GGACTGATTACCTATAACTGTCAACT-TTGTTACCGTTATCCGT-TTCCTGTCTTGGTCA 245
|||||| || |||| |||||||| | | |||| |||||||| | ||| |||||||||
Sbjct 151 GGACTGTTTTCCTACGACTGTCAA-TGTGGTTATCGTTATCC-TGAGCCTCTCTTGGTCA 208
Query 246 AACTTTATGCTAAGTTTGGGCTTCATCGTTACAAT-TTGAT-CAAGGGAACAAGCTTCGA 303
| | |||||| ||| |||||||||||||||||| || | | |||| ||||| |||||
Sbjct 209 AGCGATATGCTTTGTTGGGGCTTCATCGTTACAATATT-TTGC-AGGGGACAAGTTTCGA 266
Query 304 GCTCGCTGCCTTA-ATGAAGTTCAACATGTTACAA--AA-CTATATGTCCTCTTTCTACA 359
||||||| || || | || ||||||| | |||| || || || ||| || | |||||
Sbjct 267 GCTCGCTACCCTACA-AAAATTCAACAAG--ACAATGAACCT-TACGTCTTCGTACTACA 322
Query 360 TGACTCTGCTTGCACATGATCCCGATCCAGCTGCTAGCTCATCGCAGAAAACCTTTCAGG 419
| |||||||||||||| | |||||| | | | | | |||||||||||||||||
Sbjct 323 TTACTCTGCTTGCACA--A----GATCCA-C--C-A--T--T-GCAGAAAACCTTTCAGG 367
Query 420 TTCGAGTTGATGAAC-AACAATTTGGCACTTTGGGTATAAACTGCTC-C-ATTGCTAGAC 476
||||||||||||||| | | || || || ||||| | | || | || | ||||||||||
Sbjct 368 TTCGAGTTGATGAACGAGC-ATATGACAGTTTGGAT-TTGACAG-TCGCTATTGCTAGAC 424
Query 477 CTAAACACGAAGGT--GACT-TA-CTTGAAGTGTCCACCAA-GACGCCCTTCATACCTCA 531
||||| | ||| | | | | | | ||| ||||||| || |||||||||||||||
Sbjct 425 CTAAA-A--AAGATCAAAATGAAGC-GGCGGTGACCACCAAGGA-GCCCTTCATACCTCA 479
Query 532 CTTTCATGGTGGCGCATTGGGCG-ATGGTATATTCAAAGGTGAATTGCCTGATTGTCTCT 590
|||||||||||||||| ||| || ||||| | ||| ||||| |||||||||||| | ||
Sbjct 480 CTTTCATGGTGGCGCAGTGG-CGGATGGTGTCTTCCAAGGTCCATTGCCTGATTGGCCCT 538
Query 591 CAGATGATGCTTT 603
|||||| ||||||
Sbjct 539 CAGATGGTGCTTT 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48492350424
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5