BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G23980.1 Length=1300 Score E Sequences producing significant alignments: (Bits) Value Ahg472661 jgi|Araly1|472661|fgenesh2_kg.1__2615__AT1G23980.1 1544 0.0 > Ahg472661 jgi|Araly1|472661|fgenesh2_kg.1__2615__AT1G23980.1 Length=1292 Score = 1544 bits (836), Expect = 0.0 Identities = 1184/1335 (89%), Gaps = 92/1335 (7%) Strand=Plus/Plus Query 15 ATGTCTGAGAGGAGGATTCATTATTCCCAGCTCAAAAACGACAACTTGAAT---CAAATC 71 ||||| ||||||| ||||||| ||| ||||||| ||||||| || |||||| |||||| Sbjct 1 ATGTCAGAGAGGAAGATTCATAATTTCCAGCTCCAAAACGAGAATTTGAATCAACAAATC 60 Query 72 TCGCCTTCTTCTGCTCCTTCTCCAATCACCCTGAATCATCAATTAACCGA--C-tcttct 128 ||| | | | | ||||||||||||||||| |||||||||||| || ||| | |||||| Sbjct 61 TCG-C--C-T-T-CTCCTTCTCCAATCACCGTGAATCATCAATCAAACGATTCTTCTTCT 114 Query 129 tcttcttcttcCTCCGGTGGTAATAATCGAATAAGCCCCATCATTCTCTTCATCATCGTT 188 |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 115 TCTTCTTCTTCCTCCGGTGGTAATAATCGAATAAGCCCCATCGTTCTCTTCATTATCGTT 174 Query 189 CTCTTATCCGTAATCTTCTTCATCTGTAGCATTCTACATTTGTTGGTCAGATATTACTTA 248 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 175 CTCTTATCCGTAATCTTCTTCATCTGTAGCATTCTACATTTGTTGGTTAGATATTACTTA 234 Query 249 AAGAAGAAAAGATCAAACCTTTCGTCATCACCAAACGAATCTAATCAAAACCCAGAATTT 308 ||||||||||||| | ||||| |||||||| |||||||| ||||||||||||||||| Sbjct 235 AAGAAGAAAAGATTGAGTCTTTCTTCATCACCGCACGAATCTGATCAAAACCCAGAATTT 294 Query 309 TCCGACTCCGATACTTACCAAAGACAGCTTCAACAGCTCTTTCATCTCCATGATTCAGGT 368 |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| Sbjct 295 TCCGACTCCGATACTTACCAAAGACATCTTCAACAGCTTTTTCATCTCCACGATTCAGGT 354 Query 369 CTAGATCAAGCTTTAATCGATGCTCTTCCTGTGTTTCTTTACAAAGAGATCAAAGGTACG 428 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 355 CTAGATCAAGCTTTAATCGATGCTCTCCCTGTGTTTCTTTACAAAGAGATCAAAGGTACG 414 Query 429 AAAGAGCCTTTTGATTGTGCAGTGTGTCTCTGTGAATTCTCGGAAGATGATAAGCTTAGA 488 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 415 AAAGAGCCTTTTGATTGTGCAGTGTGTCTTTGTGAATTCTCGGAAGATGATAAGCTTAGA 474 Query 489 TTGCTTCCGAATTGTAGTCACGCTTTTCACATAGATTGTATCGATACTTGGCTTCTCTCG 548 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 475 TTGCTTCCTAATTGTAGTCACGCTTTTCATATAGATTGTATCGATACTTGGCTTCTCTCG 534 Query 549 AATTCGACTTGTCCACTTTGTAGAGGAACCCTTTTCTCTTTAGGTCATCAATTTGAATAC 608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 535 AATTCGACTTGTCCACTTTGTAGAGGAACCCTTTTCTCTTTAGGTCATCAATTTGAATAC 594 Query 609 CCTGATTTCAATTTCGGGTTTTTCGCCGGAGATGATGGAGGAGGAGGAGTTAGGGTTTCT 668 || |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 595 CCGGATTTCAATTTCGGGTTTTTCGCCGGAGATGATGGAGGAG------TTAGGGTTTCT 648 Query 669 CCGGTTCAGAAACCAGCTGAGAATGAGATTGGGAAGAGAGTGTTTTCAGTGAGGCTTGGT 728 ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 649 CCGGTGCAGAAACCGGCTGATAATGAGATTGGGAAGAGAGTGTTTTCAGTGAGGCTTGGT 708 Query 729 AAGTTTAGGAGCAGTAATATTGTCAACAATGGTGAAGTAGTAGTAGGAGGAGGAGGAGAG 788 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 709 AAGTTTAGGAGCAGCAATATTGTCAACAATGGTGAAGTAGTAGTAGGAGGAGGAGGAGAG 768 Query 789 AC-A--AGT---------AGTAGTAGT---CTTGATAATAGAAGATGTTTCTCAATGGGG 833 || | ||| ||||||||| |||||||| ||||||||||||||||||||| Sbjct 769 ACTAGTAGTGGGTGTGTGAGTAGTAGTAGTCTTGATAACAGAAGATGTTTCTCAATGGGG 828 Query 834 TCTTATCAGTACATAGTGGCTGAATCAGATCTGGTTGTTGCTTTGTGTCCTAATAATGAA 893 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 829 TCTTATCAGTACATAGTGGCTGAATCAGATCTGGTGGTGGCTTTGTGTCCTAATAATGAA 888 Query 894 GGATTGAAGAAT---AA------------TAA------GGATGTTGAAGGGAAGAAGATT 932 |||||||||||| || ||| |||||||||||||||||||||| Sbjct 889 GGATTGAAGAATGTGAAAGAAGGAGAGAGTAATAATAAGGATGTTGAAGGGAAGAAGATT 948 Query 933 AATATGAGAAGTAAAGGTGAGAGCTTTTCTGTGTCAAAGATTTGGCAATGGTCTAATAAG 992 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 949 AACATGAGAAGTAAAGGTGAGAGCTTTTCTGTGTCAAAGATTTGGCAATGGTCTAATAAG 1008 Query 993 AGATCAAAGTTTCCTAATAATCATCCATCAGAGACTAATCTTGTGGTTGGTGGttcttct 1052 |||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||| Sbjct 1009 AGATCAAAGTTTCCTAATAATC--C-ATCAGAGACCAATCTTGTGGTGGGTGGTTCTTCT 1065 Query 1053 tcttcttcttcttATGTTTGTTCTGGATCTGATGG-GTTATCA-TTGAATGGAAGG--AG 1108 ||||||| ||| |||||||||||||| || || | || ||| || || || Sbjct 1066 TCTTCTT------ATGCTTGTTCTGGATCTG--GGAGT-A-CAGTTGC-TGCTGGGTTAG 1114 Query 1109 -ATTTCAGGGTCCATGAGATTTTAAGGGT--ATAGATCAGAGGGTAGCTTTAGTTCTGCC 1165 ||| | || | ||||||| | |||| ||| | |||||||||||| | ||||||| Sbjct 1115 CATTGAATGGA--AGGAGATTTCA-GGGTCCATA-A--AGAGGGTAGCTTAA-TTCTGCC 1167 Query 1166 ATTGATTTAATTGAATTATTGATTTTGTGTGTTTTGGTGAATTCATTTTGCTTAACACGA 1225 |||| ||||||| |||||||||||||| || ||| ||||||||||||||| ||||||||| Sbjct 1168 ATTGGTTTAATTCAATTATTGATTTTGAGT-TTT-GGTGAATTCATTTTGTTTAACACGA 1225 Query 1226 TATGACCACTGTAGTGTTGTTTTGTGTCCTCTGTAGCTGAATCTCTCTGTTTGTTTAAGG 1285 || | ||||||||| ||||||||||||||||||||||||||| ||| ||| | || Sbjct 1226 TA---C---TGTAGTGTTCTTTTGTGTCCTCTGTAGCTGAATCTCTTTGT--GTTGAGGG 1277 Query 1286 GAATAAGCTTTTGTT 1300 ||||||||||||||| Sbjct 1278 GAATAAGCTTTTGTT 1292 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48606719175 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5