BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23980.1
Length=1300
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472661 jgi|Araly1|472661|fgenesh2_kg.1__2615__AT1G23980.1 1544 0.0
> Ahg472661 jgi|Araly1|472661|fgenesh2_kg.1__2615__AT1G23980.1
Length=1292
Score = 1544 bits (836), Expect = 0.0
Identities = 1184/1335 (89%), Gaps = 92/1335 (7%)
Strand=Plus/Plus
Query 15 ATGTCTGAGAGGAGGATTCATTATTCCCAGCTCAAAAACGACAACTTGAAT---CAAATC 71
||||| ||||||| ||||||| ||| ||||||| ||||||| || |||||| ||||||
Sbjct 1 ATGTCAGAGAGGAAGATTCATAATTTCCAGCTCCAAAACGAGAATTTGAATCAACAAATC 60
Query 72 TCGCCTTCTTCTGCTCCTTCTCCAATCACCCTGAATCATCAATTAACCGA--C-tcttct 128
||| | | | | ||||||||||||||||| |||||||||||| || ||| | ||||||
Sbjct 61 TCG-C--C-T-T-CTCCTTCTCCAATCACCGTGAATCATCAATCAAACGATTCTTCTTCT 114
Query 129 tcttcttcttcCTCCGGTGGTAATAATCGAATAAGCCCCATCATTCTCTTCATCATCGTT 188
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 115 TCTTCTTCTTCCTCCGGTGGTAATAATCGAATAAGCCCCATCGTTCTCTTCATTATCGTT 174
Query 189 CTCTTATCCGTAATCTTCTTCATCTGTAGCATTCTACATTTGTTGGTCAGATATTACTTA 248
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 175 CTCTTATCCGTAATCTTCTTCATCTGTAGCATTCTACATTTGTTGGTTAGATATTACTTA 234
Query 249 AAGAAGAAAAGATCAAACCTTTCGTCATCACCAAACGAATCTAATCAAAACCCAGAATTT 308
||||||||||||| | ||||| |||||||| |||||||| |||||||||||||||||
Sbjct 235 AAGAAGAAAAGATTGAGTCTTTCTTCATCACCGCACGAATCTGATCAAAACCCAGAATTT 294
Query 309 TCCGACTCCGATACTTACCAAAGACAGCTTCAACAGCTCTTTCATCTCCATGATTCAGGT 368
|||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 295 TCCGACTCCGATACTTACCAAAGACATCTTCAACAGCTTTTTCATCTCCACGATTCAGGT 354
Query 369 CTAGATCAAGCTTTAATCGATGCTCTTCCTGTGTTTCTTTACAAAGAGATCAAAGGTACG 428
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 355 CTAGATCAAGCTTTAATCGATGCTCTCCCTGTGTTTCTTTACAAAGAGATCAAAGGTACG 414
Query 429 AAAGAGCCTTTTGATTGTGCAGTGTGTCTCTGTGAATTCTCGGAAGATGATAAGCTTAGA 488
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 415 AAAGAGCCTTTTGATTGTGCAGTGTGTCTTTGTGAATTCTCGGAAGATGATAAGCTTAGA 474
Query 489 TTGCTTCCGAATTGTAGTCACGCTTTTCACATAGATTGTATCGATACTTGGCTTCTCTCG 548
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 475 TTGCTTCCTAATTGTAGTCACGCTTTTCATATAGATTGTATCGATACTTGGCTTCTCTCG 534
Query 549 AATTCGACTTGTCCACTTTGTAGAGGAACCCTTTTCTCTTTAGGTCATCAATTTGAATAC 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 AATTCGACTTGTCCACTTTGTAGAGGAACCCTTTTCTCTTTAGGTCATCAATTTGAATAC 594
Query 609 CCTGATTTCAATTTCGGGTTTTTCGCCGGAGATGATGGAGGAGGAGGAGTTAGGGTTTCT 668
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 595 CCGGATTTCAATTTCGGGTTTTTCGCCGGAGATGATGGAGGAG------TTAGGGTTTCT 648
Query 669 CCGGTTCAGAAACCAGCTGAGAATGAGATTGGGAAGAGAGTGTTTTCAGTGAGGCTTGGT 728
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 649 CCGGTGCAGAAACCGGCTGATAATGAGATTGGGAAGAGAGTGTTTTCAGTGAGGCTTGGT 708
Query 729 AAGTTTAGGAGCAGTAATATTGTCAACAATGGTGAAGTAGTAGTAGGAGGAGGAGGAGAG 788
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 AAGTTTAGGAGCAGCAATATTGTCAACAATGGTGAAGTAGTAGTAGGAGGAGGAGGAGAG 768
Query 789 AC-A--AGT---------AGTAGTAGT---CTTGATAATAGAAGATGTTTCTCAATGGGG 833
|| | ||| ||||||||| |||||||| |||||||||||||||||||||
Sbjct 769 ACTAGTAGTGGGTGTGTGAGTAGTAGTAGTCTTGATAACAGAAGATGTTTCTCAATGGGG 828
Query 834 TCTTATCAGTACATAGTGGCTGAATCAGATCTGGTTGTTGCTTTGTGTCCTAATAATGAA 893
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 829 TCTTATCAGTACATAGTGGCTGAATCAGATCTGGTGGTGGCTTTGTGTCCTAATAATGAA 888
Query 894 GGATTGAAGAAT---AA------------TAA------GGATGTTGAAGGGAAGAAGATT 932
|||||||||||| || ||| ||||||||||||||||||||||
Sbjct 889 GGATTGAAGAATGTGAAAGAAGGAGAGAGTAATAATAAGGATGTTGAAGGGAAGAAGATT 948
Query 933 AATATGAGAAGTAAAGGTGAGAGCTTTTCTGTGTCAAAGATTTGGCAATGGTCTAATAAG 992
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 AACATGAGAAGTAAAGGTGAGAGCTTTTCTGTGTCAAAGATTTGGCAATGGTCTAATAAG 1008
Query 993 AGATCAAAGTTTCCTAATAATCATCCATCAGAGACTAATCTTGTGGTTGGTGGttcttct 1052
|||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||
Sbjct 1009 AGATCAAAGTTTCCTAATAATC--C-ATCAGAGACCAATCTTGTGGTGGGTGGTTCTTCT 1065
Query 1053 tcttcttcttcttATGTTTGTTCTGGATCTGATGG-GTTATCA-TTGAATGGAAGG--AG 1108
||||||| ||| |||||||||||||| || || | || ||| || || ||
Sbjct 1066 TCTTCTT------ATGCTTGTTCTGGATCTG--GGAGT-A-CAGTTGC-TGCTGGGTTAG 1114
Query 1109 -ATTTCAGGGTCCATGAGATTTTAAGGGT--ATAGATCAGAGGGTAGCTTTAGTTCTGCC 1165
||| | || | ||||||| | |||| ||| | |||||||||||| | |||||||
Sbjct 1115 CATTGAATGGA--AGGAGATTTCA-GGGTCCATA-A--AGAGGGTAGCTTAA-TTCTGCC 1167
Query 1166 ATTGATTTAATTGAATTATTGATTTTGTGTGTTTTGGTGAATTCATTTTGCTTAACACGA 1225
|||| ||||||| |||||||||||||| || ||| ||||||||||||||| |||||||||
Sbjct 1168 ATTGGTTTAATTCAATTATTGATTTTGAGT-TTT-GGTGAATTCATTTTGTTTAACACGA 1225
Query 1226 TATGACCACTGTAGTGTTGTTTTGTGTCCTCTGTAGCTGAATCTCTCTGTTTGTTTAAGG 1285
|| | ||||||||| ||||||||||||||||||||||||||| ||| ||| | ||
Sbjct 1226 TA---C---TGTAGTGTTCTTTTGTGTCCTCTGTAGCTGAATCTCTTTGT--GTTGAGGG 1277
Query 1286 GAATAAGCTTTTGTT 1300
|||||||||||||||
Sbjct 1278 GAATAAGCTTTTGTT 1292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48606719175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5