BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24030.1
Length=1553
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472663 jgi|Araly1|472663|fgenesh2_kg.1__2617__AT1G24030.2 1674 0.0
> Ahg472663 jgi|Araly1|472663|fgenesh2_kg.1__2617__AT1G24030.2
Length=1565
Score = 1674 bits (906), Expect = 0.0
Identities = 1032/1090 (95%), Gaps = 19/1090 (2%)
Strand=Plus/Plus
Query 454 AGAGGTTGTTGCAATCAAGAAGATGGATTTACCTACGTTTAAAAAGGCTGACGGAGAAAG 513
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 AGA-GTTGTTGCAATCAAGAAGATGGATTTACCTACGTTTAAAAAGGCTGATGGAGAAAG 539
Query 514 AGAATTTCGTGTGGAGGTGGATATCTTGAGCAGACTCGACCACCCAAATCTGGTCTCTTT 573
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 540 AGAATTTCGTGTGGAGGTGGATATCTTGAGCAGACTCGACCATCCAAATCTGGTATCATT 599
Query 574 GATCGGCTATTGTGCAGATGGGAAACACCGGTTCCTAGTATATGAATATATGCAAAATGG 633
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 GATTGGCTATTGTGCAGATGGAAAACACCGGTTCCTAGTATATGAATATATGCAAAATGG 659
Query 634 AAACCTGCAAGATCATTTGAATGGAATCAAAGAAGCAAAAATAAGCTGGCCAATAAGGCT 693
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 AAACCTGCAAGATCATTTGAATGGAATAAAAGAAGCAAAAATAAGCTGGCCAATAAGGCT 719
Query 694 CAGAATTGCACTAGGAGCAGCAAAAGGACTCGCGTATCTCCATTCAAGTTCTTCTGTTGG 753
|||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 720 CAGAATTGCACTTGGAGCAGCCAAAGGACTCGCGTATCTACATTCAAGTTCTTCTGTTGG 779
Query 754 GATTCCAATTGTTCACAGAGACTTCAAATCCACCAACGTTCTACTAGACTCCAATTATAA 813
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 780 GATTCCAATTGTTCATAGAGATTTCAAATCCACCAACGTTCTACTAGACTCCAACTATGA 839
Query 814 TGCAAAGATATCCGACTTTGGACTAGCAAAGTTGATGCCAGAAGGAAAGGATACTTGTGT 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGCAAAGATATCCGACTTTGGACTAGCAAAGTTGATGCCAGAAGGAAAGGATACTTGTGT 899
Query 874 CACAGCAAGAGTTCTAGGAACATTCGGCTATTTCGACCCAGAATATACATCGACAGGTAA 933
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 900 GACAGCAAGAGTTCTAGGAACATTTGGCTATTTCGACCCAGAATATACATCGACAGGTAA 959
Query 934 ACTTACTCTACAAAGCGACATTTATGCATTTGGGGTTGTGCTGCTAGAACTACTTACTGG 993
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 960 ACTTACTCTACAAAGCGACATTTATGCATTTGGGGTTGTGCTTCTAGAACTACTTACTGG 1019
Query 994 ACGCAGAGCAGTTGACTTAACTCAGGGCCCAAATGAACAGAACCTGGTGCTACAGGTTAG 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACGCAGAGCAGTTGACTTAACTCAGGGCCCAAATGAACAGAACCTGGTGCTACAGGTTAG 1079
Query 1054 GAATATACTGAATGATAGAAAGAAATTGCGTAAGGTTATAGATGTCGAGCTGCCTCGGAA 1113
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1080 GAATATACTGAATGATAGAAAGAAATTGCGTAAGGTTATAGATGCCGAGCTGCCTCGGAA 1139
Query 1114 TTCATACAGCATGGAAGCTATAACCATGTTTGCTGATCTAGCATCACGGTGCATCCGTAT 1173
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1140 TTCATACAGCATGGAAGCTATAGCTATGTTTGCTGATCTAGCATCACGGTGCATCCGTAT 1199
Query 1174 AGAGAGTAAAGAGCGACCTTCAGTGATGGATTGTGTTAAGGAACTGCAACTAATTATCTA 1233
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AGAGAGTAAAGAGCGGCCTTCAGTGATGGATTGTGTTAAGGAACTGCAACTAATTATCTA 1259
Query 1234 CACAAACTCGAAGGGTGGTTTGGGTGGGACGATTCCTACATTCAGAAGGCTCTAGACACT 1293
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1260 CACAAACTCGAAGGGTGGTTTGGGTGGGACGATTCCCACATTCAGAAGGCTCTAGACACT 1319
Query 1294 GAATTCTTCGAAACAAGTAAAATGGATTACTGTCATTTTTCCTAAAATGAGAGGTCACTG 1353
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1320 GAATTCTTTGAAACAAGTAATATGGATTATTGTCATTTTTCCTAAAATGAGAGGTCACTG 1379
Query 1354 ATaaaaaaaCACTTGATAAATATAAACAAACAATACTAA-TT---A-T---GAATTACCG 1405
|| ||||| | |||||||||||||||||||||| |||| || | | |||||||||
Sbjct 1380 ATTAAAAA-C--TTGATAAATATAAACAAACAATCCTAAATTCCTAATTAAGAATTACCG 1436
Query 1406 GATAATTTCA-ATTCAACTTCCAGCTAGGAAACTTTGATCAAGCGATATTATTTGGATAT 1464
|| ||||| | |||||||||||||| | ||||||| ||||||||||||||||||||| |
Sbjct 1437 GAAAATTT-ATATTCAACTTCCAGCCACTAAACTTTCATCAAGCGATATTATTTGGATGT 1495
Query 1465 ATATACTATAATTTCACTAAGAAAATC--A--A-GCACTAGATGTATCCGTATAGTATGT 1519
||||||||||| ||| |||||||||| | | ||| ||||||||| |||||||||||
Sbjct 1496 ATATACTATAAAGTCAATAAGAAAATCGGATCAAGCAATAGATGTATTTGTATAGTATGT 1555
Query 1520 TGTATTTGCT 1529
||||||||||
Sbjct 1556 TGTATTTGCT 1565
Score = 316 bits (171), Expect = 2e-85
Identities = 200/214 (93%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 255 CCAGATGGCATAAAAGGGTCTACAGAACAGCAGAATGCTGGCAAATCGAAGATCAGGCTT 314
||| |||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 235 CCATATGGCATAAAAGGGTCTACAGAACAGCAGAGTGCTGGCAAATCGAAGATCAAGCGT 294
Query 315 CTCAGCCAAGGAAGCGAAGATTCGGGTCATCAGTTTATACCCTCAAGGAGATGGAGGAGG 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 CTCAGCCAAGGAAGCGAAGATTCGGGTCATCAGTTTATACCCTCAAGGAGATGGAGGAGG 354
Query 375 CCACAAGTTCTTTCAGTGATGAGAATCTCCTCGGTAAAGGAGGCTTTGGCCGAGTTTACC 434
|||||||||||||||| ||||||| ||||||||| |||||||||||||| ||||| |||
Sbjct 355 CCACAAGTTCTTTCAGCGATGAGA-TCTCCTCGGCAAAGGAGGCTTTGGTCGAGTATACA 413
Query 435 AAGGCACTTTAAAAACAGGAGAGGTTGTTGCAAT 468
|||||||| ||||||||||||||| | ||| |||
Sbjct 414 AAGGCACTCTAAAAACAGGAGAGGCT-TTGTAAT 446
Score = 296 bits (160), Expect = 3e-79
Identities = 215/239 (90%), Gaps = 13/239 (5%)
Strand=Plus/Plus
Query 1 AACAATCTTCTGTTTCTTTGGAAGCAACTAAC-TACAAAGAACATCTTCACGACTAGAAA 59
|||||||||||||||||||||||||||||||| ||||||| | || |||||||||| |||
Sbjct 1 AACAATCTTCTGTTTCTTTGGAAGCAACTAACTTACAAAGGATATATTCACGACTACAAA 60
Query 60 GACACATACC-CTTCTGTCTTAAGGACGAGAC-CAGAAGCTTCTTCTATCGGCTTTGTAA 117
|||||| || ||||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 61 GACACA-CCCTCTTCTGTCTTAAGGACGAGACAGAGAAGCTTCTTCTATTGGCTTTGGAA 119
Query 118 TGG--TCT---A-C-A--AAGGATAAGAAAAAACCAAATCCAAACTAAAGCTATGCATTT 168
||| ||| | | | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGGTCTCTGGCATCTACGAAGCATAAGAAAAAACCAAATCCAAACTAAAGCTATGCATTT 179
Query 169 TCCACTTGTTTCGGCTTGGAACAAGAGAAGGAGAAGCAAATCATATGATACGGATCCAT 227
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 180 TCCTCTTGTTTCGGCTTGGAACAAGAGAAGGAGAAGCAAATCTTATGATACGGATCCAT 238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58163804115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5