BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24040.1
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921459 jgi|Araly1|921459|scaffold_102740.1 1504 0.0
Ahg472663 jgi|Araly1|472663|fgenesh2_kg.1__2617__AT1G24030.2 303 2e-81
> Ahg921459 jgi|Araly1|921459|scaffold_102740.1
Length=1003
Score = 1504 bits (814), Expect = 0.0
Identities = 933/990 (94%), Gaps = 9/990 (1%)
Strand=Plus/Plus
Query 23 AATCgtgtgtgtgtgtgtCAATGGCGGCTTTAAGCATCTCACTAGCTTTCTCTGTTGATT 82
|||||| | ||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 2 AATCGTCTCTGTGTGTGTCAATGGCGGCCTTAAGCATCTCACTCGCTTTCTCTGTTGATT 61
Query 83 CTCTCAAACCAACCCAATCAACGAAGTTTGGCTTCTCGTCTTCTTCACATAGATATCCAT 142
|||| ||||||| |||||||||||||||||| |||||||||||||| | |||||||||||
Sbjct 62 CTCTTAAACCAAGCCAATCAACGAAGTTTGGTTTCTCGTCTTCTTCTCCTAGATATCCAT 121
Query 143 TACTCTACTCGTGTAAATCTCACCGCTCCAATCTCAGATTCGCTTTCCCTCCTTCTTCAG 202
||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 122 TACTCTATTCGTGTAGATCTCACCGCTCCAATCTCAGATTCGCTTACCCTCCTTCTTCGG 181
Query 203 TTTCGACAGCTACAGAAACTGGAGAAGAAAACT-CTAAATCGACCGGGAA-TTACGCGTT 260
||||||||||||||||||||||||||| || || | ||||| ||| |||| ||||||||
Sbjct 182 TTTCGACAGCTACAGAAACTGGAGAAG-AAGCTGCGAAATCTACC-GGAAGCTACGCGTT 239
Query 261 TCTAGAGGAATCGTTTCGTACCGGGAGGTTTTTGAGTAACGATGAGTTAGAGAAGCTT-A 319
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
Sbjct 240 TCTAGAGGAATCGTTTCGTACTGGGAGGTTTTTGAGTAACGATGAGTTAGAGAAG-TTGA 298
Query 320 AAACTCTTGAAGGATTTGCGTATTTTCAAGAGCTTGAATCTGGATCGATGTGGGTTCGAG 379
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 299 AAACTCTTGAAGGGTTTGCGTATTTTCAGGAGCTTGAATCTGGATCGATGTGGGTTCGGG 358
Query 380 TTATGAGACATGAAGAGATGGATTCAACGGTGCATCTATTGGCTGAGTCATTTGGTGAAT 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTATGAGACATGAAGAGATGGATTCAACGGTGCATCTATTGGCTGAGTCATTTGGTGAAT 418
Query 440 CGATGTTATTACCTTCTGGTTATCAGTCTGTGTTACGGTTTTTGATTAAGCAGTATTTGA 499
|||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 419 CGATGTTATTGCCTTCTGGTTATCAATCTGTGTTACGGTTTTTGGTTAAGCAGTATTTGA 478
Query 500 TTGAGAGAAGAGAAGTGTTGCCACACGCAGTTACTTTAGTTGGTTTCTTTAGGAAAAAAG 559
||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 479 TTGAGAGGAGAGAAGTGTTGCCACACTCAGTTACTTTAGTTGGGTTCTTTAGGAAAAAAG 538
Query 560 TTGATGAGTTTAGTGATGATGGAGAGGAGGAGGCTGTGATGGCTGGAACTGTTGAGGTTT 619
|||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 539 TTGATGGGTTTAGTGATGATGGAGAGGAGGAGGCTGAGATGGCTGGAACGGTTGAGGTTT 598
Query 620 GTTTGGAGAAACGAGGCGCTAATGCTTCTCCTCCTTCTCCAACTCCTCCTAAGGAATCAC 679
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 599 GTTTGGATAAACGAGGCGCTAATGCTTCGCCTCCTTCTCCAACTCCTCCTAAGGAATCAC 658
Query 680 CTTATATCTGTAACATGACTGTCAAAGAGGATCTTAGAAGGAGAGGAATTGGGTGGCATT 739
||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 659 CTTATATTTGCAACATGACTGTGAAAGAGGATCTTAGAAGGAGGGGAATTGGGTGGCATT 718
Query 740 TGTTGAAGGCGAGTGAGGAACTGATATCTCAGATTAGTCCATCAAAAGATGTATACTTGC 799
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGTTGAAGGCGAGTGAGGAATTGATATCTCAGATTAGTCCATCAAAAGATGTATACTTGC 778
Query 800 ATTGTAGGATGGTTGATGAGGCTCCTTTCAATATGTACAAGAAGGCAGGATACGAGGTTG 859
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 779 ATTGTAGGATGGTGGATGAGGCTCCTTTCAATATGTACAAGAAAGCAGGATACGAGGTTG 838
Query 860 TTAAGACAGATACAGTTTTGGTCCTTCTGATGTTACAGCGGCGTAAGCATTTGATGCGGA 919
||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| |
Sbjct 839 TTAAGACAGATACTGTTTTGGTCCTTTTGATGTTACAGCGGCGTAAACATTTGATGCGCA 898
Query 920 AGAAACTTCTTCCACTATGCACCAATCCTATAGTAGAAATGGTGGGGTCTGATAATGAGC 979
| ||| |||||||||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 899 A-AAAG--CTTCCACTATGCACCACCCCTACAGTAGAAATTGTGGGGTCTGATAATGAGC 955
Query 980 TGACCTCCTCTGCAAATGTGTAAACATGGG 1009
||||||||||||||||||||||||||||||
Sbjct 956 TGACCTCCTCTGCAAATGTGTAAACATGGG 985
> Ahg472663 jgi|Araly1|472663|fgenesh2_kg.1__2617__AT1G24030.2
Length=1565
Score = 303 bits (164), Expect = 2e-81
Identities = 176/182 (97%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 1086 AGGTTTCCATTTTGCATATATTCATATACTAGGAACCGGTGTTTCCCATCTGCACAATAG 1145
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 665 AGGTTTCCATTTTGCATATATTCATATACTAGGAACCGGTGTTTTCCATCTGCACAATAG 606
Query 1146 CCGATCAAAGAGACCAGATTTGGGTGGTCGAGTCTGCTCAAGATATCCACCTCCACACGA 1205
|| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 605 CCAATCAATGATACCAGATTTGGATGGTCGAGTCTGCTCAAGATATCCACCTCCACACGA 546
Query 1206 AATTCTCTTTCTCCGTCAGCCTTTTTAAACGTAGGTAAATCCATCTTCTTGATTGCAACA 1265
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 AATTCTCTTTCTCCATCAGCCTTTTTAAACGTAGGTAAATCCATCTTCTTGATTGCAACA 486
Query 1266 AC 1267
||
Sbjct 485 AC 484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52259816140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5