BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24050.1
Length=1039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912263 jgi|Araly1|912263|Al_scaffold_0001_2517 939 0.0
> Ahg912263 jgi|Araly1|912263|Al_scaffold_0001_2517
Length=570
Score = 939 bits (508), Expect = 0.0
Identities = 551/571 (96%), Gaps = 5/571 (1%)
Strand=Plus/Plus
Query 48 ATGGATCCAGC---AGGAGCATCGGTGGCCAGCGCA-ATCGGAGGAGAAGGAGAGAAATT 103
||||||||||| |||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 1 ATGGATCCAGCAGGAGGAGCATCGGTGGCCAGCG-ATATTGGAGGAGAAGGAGAGAAATT 59
Query 104 CGCGGTGGGGAATATTTATTCAGTGAAGGTGATCACCGGAGATGAGTTCAGAGGGATCGT 163
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 60 CACGGTGGGGAATATTTATTCAGTGAAGGTGATCACCGGAGATGAGTTCCGAGGGATCGT 119
Query 164 CATGGCTTACGACCCCATCCCCAACTTCGTCTTTTTTGAAGAGGGTACAAAACCTAGACC 223
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 120 CATGGCTTACGACCCCATCCCCAACTTCGTCTTTTTTGAAGAAGGAACAAAACCTAGACC 179
Query 224 TGGGCATTTGAAGAACACTCGGATGGTGAATGCGAGTTTTATTACAGGGCTTTCGTATTT 283
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 180 CGGGCATTCGAAGAACACTCGGATGGTGAATGCGAATTTTATTACAGGGCTTTCGTATTT 239
Query 284 AGGCAAAACTGAAGATCCACTTGATTCAGACAACTTTTCTGTTGATCTTAATGGTCTCCG 343
||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 240 AGGCAAAACCGAAGATCCACTTGATACAGACAACTTTTCTGTTGATCTTAATAGTCTCCG 299
Query 344 AGCTAAAGAGGCACTTGCTATCAGGCAAGCGGAAGCAGATGCTGAAAGAATGGGAGTTGG 403
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 AGCTAAAGAGGCACTTGCTATCAGGCAAGCGGAAGCAGATGCTGAGAGAATGGGAGTTGG 359
Query 404 TGTTACCGCTGAGGCTCAGAGCATCTTCGACGCGTTGTCTAAGACGCTTCCTGTGCAATG 463
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGTTACCGCTGAGGCCCAGAGCATCTTCGACGCGTTGTCTAAGACGCTTCCTGTGCAATG 419
Query 464 GGAAAACTCAGACATTCTGGTGATGAAAGAGGTACGCGTTCGTAGCCCGTATCTTTCAGA 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGAAAACTCAGACATTCTGGTGATGAAAGAGGTACGCGTTCGTAGCCCGTATCTTTCAGA 479
Query 524 TTGTGTCTTTGGAGGAACTGATGCTGCCAACAACCGAGTCAAGAAAGTGCTTGAGCTGGA 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTGTGTCTTTGGAGGAACTGATGCTGCCAACAACCGAGTCAAGAAAGTGCTTGAGCTGGA 539
Query 584 AAGACGAAGGTTGCAACTCTTTGGCACATGA 614
||||| ||||||||||||||||||||||||
Sbjct 540 GAGACGGAGGTTGCAACTCTTTGGCACATGA 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38656637838
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5