BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24060.1
Length=375
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313252 jgi|Araly1|313252|fgenesh1_pm.C_scaffold_1002032 418 1e-116
Ahg472667 jgi|Araly1|472667|fgenesh2_kg.1__2621__AT1G24060.1 355 1e-97
> Ahg313252 jgi|Araly1|313252|fgenesh1_pm.C_scaffold_1002032
Length=372
Score = 418 bits (226), Expect = 1e-116
Identities = 334/382 (87%), Gaps = 23/382 (6%)
Strand=Plus/Plus
Query 7 ATGAAAAAACACCCGAATCTTCTTCTTGGTTTCAGCGTCTACCTTTCAGCTGGGACTAAG 66
|||||||| |||| |||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1 ATGAAAAACCACCGGAATATTCTTCTAGGTTTCAGCGTCTACCTTTCAGCTGGCACTAAG 60
Query 67 CTAACCATCCCTCCCGAGGCTGAGCAACATACTGCGCCATCTGATAATAACAAACGAAAA 126
||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||
Sbjct 61 CTAACCATCCCTCCCGAGGCTAAGCAACATATTGCGCCGTCTGATAATAACAAACGAAAA 120
Query 127 CGTGCTAAGTGTGATGATCCATCGATGATCAAGATTACGTCTGAAAATAACAAAAGAACA 186
|||||||||||| |||||||| |||||||||||||||||||||| ||||||||| ||| |
Sbjct 121 CGTGCTAAGTGTAATGATCCAGCGATGATCAAGATTACGTCTGATAATAACAAACGAAAA 180
Query 187 CGTGC-AACGTGTGAT-GATCCATG-GATGATCACGATAACGTCTGATAATA---A---- 236
||||| || |||| || |||||| | |||||||| ||| |||||||||||| |
Sbjct 181 CGTGCTAA-GTGT-ATTGATCCA-GCGATGATCAAGATTGCGTCTGATAATACTGATAAT 237
Query 237 --CAAAAGAAAACGTGCTAAGTACTGTGATGATCCAGATTATGATCCGGATTATGTGAAG 294
|||||||||||||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct 238 AACAAAAGAAAACGTGCTAAGT---GTGATGATCCAGATTATGATCCGGATTCTGAGAAG 294
Query 295 AAGCTTAAGGCTTGTGTTAGTAGTGGATTGCTAAA-GAAAGCAACTCAATCTCAGCGAAA 353
|||||||||||||||| |||||||||| || ||| ||| ||| |||||||||||||||
Sbjct 295 AAGCTTAAGGCTTGTGGAAGTAGTGGATCGC-AAATGAACGCATCTCAATCTCAGCGAAG 353
Query 354 TACTCAACAAGTAGAAGATTAG 375
||||||| |||||||| |||
Sbjct 354 TACTCAA---GTAGAAGACTAG 372
Score = 108 bits (58), Expect = 4e-23
Identities = 97/113 (86%), Gaps = 13/113 (12%)
Strand=Plus/Plus
Query 106 TCTGATAATAACAAACGAAAACGTGCTAAGTGTGAT-GATCCATCGATGATCAAGATTAC 164
||||||||||||||||||||||||||||||||| || |||||| |||||||||||||| |
Sbjct 160 TCTGATAATAACAAACGAAAACGTGCTAAGTGT-ATTGATCCAGCGATGATCAAGATTGC 218
Query 165 GTCTGA-AA-A-T-A-A----CAAAAGAACACGTGC-AACGTGTGATGATCCA 207
|||||| || | | | | |||||||| |||||| || |||||||||||||
Sbjct 219 GTCTGATAATACTGATAATAACAAAAGAAAACGTGCTAA-GTGTGATGATCCA 270
> Ahg472667 jgi|Araly1|472667|fgenesh2_kg.1__2621__AT1G24060.1
Length=303
Score = 355 bits (192), Expect = 1e-97
Identities = 273/309 (88%), Gaps = 18/309 (6%)
Strand=Plus/Plus
Query 7 ATGAAAAAACACCCGAATCTTCTTCTTGGTTTCAGCGTCTACCTTTCAGCTGGGACTAAG 66
|||||||| |||| |||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1 ATGAAAAACCACCGGAATATTCTTCTAGGTTTCAGCGTCTACCTTTCAGCTGGCACTAAG 60
Query 67 CTAACCATCCCTCCCGAGGCTGAGCAACATACTGCGCCATCTGATAATAACAAACGAAAA 126
||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||
Sbjct 61 CTAACCATCCCTCCCGAGGCTAAGCAACATATTGCGCCGTCTGATAATAACAAACGAAAA 120
Query 127 CGTGCTAAGTGTGATGATCCATCGATGATCAAGATTACGTCTGAAAATAACAAAAGAACA 186
|||||||||||| |||||||| |||||||||||||||||||||| ||||||||| ||| |
Sbjct 121 CGTGCTAAGTGTAATGATCCAGCGATGATCAAGATTACGTCTGATAATAACAAACGAAAA 180
Query 187 CGTGC-AACGTGTGAT-GATCCATG-GATGATCACGATAACGTCTGATAATA---A---- 236
||||| || |||| || |||||| | |||||||| ||| |||||||||||| |
Sbjct 181 CGTGCTAA-GTGT-ATTGATCCA-GCGATGATCAAGATTGCGTCTGATAATACTGATAAT 237
Query 237 --CAAAAGAAAACGTGCTAAGTACTGTGATGATCCAGATTATGATCCGGATTATGTGAAG 294
|||||||||||||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct 238 AACAAAAGAAAACGTGCTAAGT---GTGATGATCCAGATTATGATCCGGATTCTGAGAAG 294
Query 295 AAGCTTAAG 303
|||||||||
Sbjct 295 AAGCTTAAG 303
Score = 108 bits (58), Expect = 4e-23
Identities = 97/113 (86%), Gaps = 13/113 (12%)
Strand=Plus/Plus
Query 106 TCTGATAATAACAAACGAAAACGTGCTAAGTGTGAT-GATCCATCGATGATCAAGATTAC 164
||||||||||||||||||||||||||||||||| || |||||| |||||||||||||| |
Sbjct 160 TCTGATAATAACAAACGAAAACGTGCTAAGTGT-ATTGATCCAGCGATGATCAAGATTGC 218
Query 165 GTCTGA-AA-A-T-A-A----CAAAAGAACACGTGC-AACGTGTGATGATCCA 207
|||||| || | | | | |||||||| |||||| || |||||||||||||
Sbjct 219 GTCTGATAATACTGATAATAACAAAAGAAAACGTGCTAA-GTGTGATGATCCA 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13392611739
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5