BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G24068.1

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg914987 jgi|Araly1|914987|Al_scaffold_0001_5241                    261    3e-69


> Ahg914987 jgi|Araly1|914987|Al_scaffold_0001_5241
Length=315

 Score =  261 bits (141),  Expect = 3e-69
 Identities = 183/204 (90%), Gaps = 0/204 (0%)
 Strand=Plus/Plus

Query  202  CAATAAAGATAGTAGCATTGCAAGGATGATTAAACTCATTAAAGCGCACCCGCAGCTGCT  261
            |||||||| | || ||||||||||||||||| |||||||||||| ||||||| |||||||
Sbjct  60   CAATAAAGTTTGTGGCATTGCAAGGATGATTGAACTCATTAAAGGGCACCCGAAGCTGCT  119

Query  262  TCCTGGTCTTAATGTCTTCCTTCCAGAGGCTAACAAAGGATTATGCCAATCTCAAACCAT  321
            || |||||| || ||||||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct  120  TCTTGGTCTCAAAGTCTTCCTTCCCGAGGCTAGCAAAGAATTATGCCAATCTCAAACCAT  179

Query  322  AGGTTCCACAAGCGTATCCCCGGAGCTACTTAAGGTTAATGCGTCTGCATACCTGGCTTC  381
            |||||||||||||||||| ||| |||||||||||||||||| | || || |||||  |||
Sbjct  180  AGGTTCCACAAGCGTATCACCGAAGCTACTTAAGGTTAATGTGCCTACAAACCTGATTTC  239

Query  382  TGTGGAAGAAGCATTTGATGATGA  405
            ||||||||| ||||||||||||||
Sbjct  240  TGTGGAAGAGGCATTTGATGATGA  263



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16864770338


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5