BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24070.1
Length=1858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313253 jgi|Araly1|313253|fgenesh1_pm.C_scaffold_1002033 2643 0.0
Ahg905719 jgi|Araly1|905719|Al_scaffold_0003_2847 1218 0.0
Ahg488470 jgi|Araly1|488470|fgenesh2_kg.6__1604__AT5G16190.1 1199 0.0
Ahg946577 jgi|Araly1|946577|scaffold_702806.1 898 0.0
Ahg915048 jgi|Araly1|915048|Al_scaffold_0009_17 795 0.0
> Ahg313253 jgi|Araly1|313253|fgenesh1_pm.C_scaffold_1002033
Length=1659
Score = 2643 bits (1431), Expect = 0.0
Identities = 1584/1660 (95%), Gaps = 2/1660 (0%)
Strand=Plus/Plus
Query 1 ATGACTACGTTTCTGAAGTCACTCATCTTCTTACAAGATTCATGTCTTGCCTTCCTCTCT 60
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1 ATGACTACGTTTCTGAAGTCACTCATCTCCTTACAAGATTCATGTCTTGCCTTCTTCTCT 60
Query 61 CTAATGTTCCATCGAGGGAGTTCTGAGGATGCAGCTGAAGCTCTCAAGAAGCTTGAAACA 120
||| |||||||| ||||||||||||| |||||||||||||||| ||||||||||||| ||
Sbjct 61 CTACTGTTCCATGGAGGGAGTTCTGAAGATGCAGCTGAAGCTCCCAAGAAGCTTGAAGCA 120
Query 121 TCCATAAATGGTGCGAGGATAAGCTTCGACACGACATGGACACGAGAATTTAGGAGCTTA 180
||||||||||||| |||||||||| ||||||||||||||||| ||||||| || |||||
Sbjct 121 TCCATAAATGGTGTGAGGATAAGCATCGACACGACATGGACAGGAGAATTGAGAAGCTTC 180
Query 181 TTTATAGTTCCCTTATTCAAGTGTTTGGTGGCTTTTTGTTTGATAATCTCCCTCTTAGTT 240
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 181 CTTATAGTTCCCTTATTCAAGTGTTTGGTGGCTCTTTGTTTGATGATCTCCCTCTTAGTT 240
Query 241 TTCATAGAGGGTATATACATGAACCTTGTAGTACTCTACGTCAAGGTGTTTGAGCGAAAA 300
|||||||||||||||||||||||||||||||||||||| |||||| ||||| | ||||||
Sbjct 241 TTCATAGAGGGTATATACATGAACCTTGTAGTACTCTATGTCAAGTTGTTTAACCGAAAA 300
Query 301 CCCGAAAAAGTTTATAGATGGGAGGCGATGCAAGAGGACATTGAGCTTGGACATGAAACC 360
|| |||||| | || | ||||||| |||||| |||||||||||||| ||||||||||||
Sbjct 301 CCGGAAAAAATCTACAAATGGGAGCCGATGCCGGAGGACATTGAGCTCGGACATGAAACC 360
Query 361 TACCCCATGGTCCTTGTCCAAATTCCAATGTACAACGAAAAAGAGGTCCTTCAATTATCT 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TACCCCATGGTCCTTGTTCAAATTCCAATGTACAACGAAAAAGAGGTCCTTCAATTATCT 420
Query 421 ATAGGTGCTGCATGTAGACTAATATGGCCATTGGACCGCCTAATTGTTCAAGTTTTAGAT 480
|||||||||| |||||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct 421 ATAGGTGCTGTATGTAGACTAATCTGGCCATTGGATCGCCTAATTGTTCAAGTTCTAGAT 480
Query 481 GATTCCACTGATCAAACCATCAAGGAGCTGGTGAACACAGAGTGTGCAAAATGGGAAAGC 540
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 481 GATTCCACTGATCAAACCATGAAGGGGCTGGTGAACACAGAGTGTGCAAAATGGGAAAGC 540
Query 541 AAAGGTGTAAATATAAAGTGTGAGAGGAGAGACAACAGAAATGGCTACAAAGCCGGAGCT 600
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 AAAGGCGTAAATATAAAGTGTGAGAGGAGAGACAACAGAAATGGCTATAAAGCCGGAGCT 600
Query 601 CTTAAAGAAGGCATGAAGCACAACTACGTGAAGCTATGCAATTATGTCGTCATCTTCGAC 660
|||||| |||||||||||||||| ||||||||||||||||| ||||| |||||||| |||
Sbjct 601 CTTAAACAAGGCATGAAGCACAATTACGTGAAGCTATGCAACTATGTTGTCATCTTTGAC 660
Query 661 GCAGACTTCCAACCGGAGCCTGATTACCTCCAACACTCTGTCCCCTTCCTCGTTCATAAC 720
|||||||| ||||||||||||||||||||||||| ||||||||| |||||||| ||||||
Sbjct 661 GCAGACTTTCAACCGGAGCCTGATTACCTCCAACGCTCTGTCCCATTCCTCGTCCATAAC 720
Query 721 CCCGAGGTCGCTCTGGTTCAAGCCCGATGGAGATTCATGAACGCAAACAAGTGCTTGATG 780
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 CCCGAGGTCGCTCTTGTTCAAGCCCGTTGGAGATTCATGAACGCAAACAAGTGCTTGATG 780
Query 781 ACGAGGATGCAAGAGATGTCCCTCAACTACCACTTTATGGCAGAGCAAGAATCTGGATCC 840
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 781 ACGAGGATGCAAGAGATGTCCCTCAACTACCACTTCATGGCAGAACAAGAATCTGGATCC 840
Query 841 ACTAGACATGCCTTCTTTAGCTTCAATGGAACTGCGGGTGTATGGAGAATGGCCGCGATG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ACTAGACATGCCTTCTTTAGCTTCAATGGAACTGCGGGTGTATGGAGAATGGCCGCGATG 900
Query 901 GAAGAAGCTGGAGGATGGCATGACCGGACTACTGTAGAGGACATGGACTTGGCCGTTCGT 960
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 901 GAAGAAGCTGGAGGATGGCATGACCGGACCACTGTAGAGGACATGGACTTGGCCGTTCGT 960
Query 961 GCTGGTCTTCTCGGCTGGAAATTTGTCTTTCTCAATGACCTCACGGTGAAAAGCGAGTTA 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 961 GCTGGTCTTCTCGGCTGGAAATTTGTCTTTCTCAATGACCTCACGGTGAAAAGCGAATTA 1020
Query 1021 CCAAGCAAGTTTAAGGCCTTTAGATTCCAGCAACATCGATGGTCTTGTGGTCCAGCTAAT 1080
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CCAAGCAAATTTAAGGCCTTCAGATTCCAGCAACATCGATGGTCTTGTGGTCCAGCTAAT 1080
Query 1081 CTCTTCAGGAAAATGATTATGGAGATTATTCGCAATAAGAGAGTGACGATTTGGAAGAAG 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTCTTCAGGAAAATGATTATGGAGATTATTCGCAATAAGAGAGTGACGATTTGGAAGAAG 1140
Query 1141 TTGTATCTGGTCTACAGCTTCTTTTTCTTACGGAAGATCATAGTCCACTGCTTCAC-TTT 1199
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1141 TTGTATTTGGTCTACAGCTTCTTTTTCTTACGGAAGATCATCGTCCACTGCTTCACGTTT 1200
Query 1200 TATTTTCTACTGTGTTATTCTTCCTACAAGTGTCTTCTTTCCCGAAGTCAACATTCCAGC 1259
| || |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1201 TCGTT-CTACTGCGTTATTCTTCCTACAAGTGTCTTCTTCCCCGAAGTCAACATTCCAGC 1259
Query 1260 TTGGTCAACTTTTTACATTCCCTCTATGATCACTCTCTGCATTGTCATTGCGACACCAAG 1319
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1260 TTGGTCAACTTTTTACATTCCGTCTATGATCACTCTCTGCATCGTCATTGCGACACCAAG 1319
Query 1320 ATCATTCTACCTCGTGATATTTTGGATCTTGTTTGAAAACGTAATGTCTATGCACCGGAC 1379
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 ATCATTCTACTTCGTGATATTTTGGATCTTGTTTGAAAACGTAATGTCTATGCACCGGAC 1379
Query 1380 AAAAGGAACTTTCATCGGCATACTCGAAAGACAAAGAGTGAACGAATGGGTTGTCACTGA 1439
|| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1380 GAAGGGAACTTTCATCGGCATACTCGAAAAACAAAGAGTTAACGAATGGGTTGTCACTGA 1439
Query 1440 GAAATTAGGAGATGCTCTTAAGACTAAGCTACTTCCTAGGATTGGAAAACCTAGTAACAT 1499
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1440 GAAATTAGGAGATGCTCTTAAGACTAAGCTACTTCCTCGGATTGGAAAACCTAGTAACGG 1499
Query 1500 GTTTCTTGAAAGAGTAAACTCCAAGGAGATAATGGTGGGGATATACATCTTGTGTTGTGC 1559
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1500 GTTTCTTGAAAGAGTAAACTCCAAGGAGGTAATGGTGGGGATATACATCTTGTGTTGTGC 1559
Query 1560 TTGCTATGGACTTTTCTTTGGGAACACATTGTTATATCTCTATCTCTTCATGCAAGCGGT 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TTGCTATGGACTTTTCTTTGGGAACACATTGTTATATCTCTATCTCTTCATGCAAGCGGT 1619
Query 1620 TGCTTTTCTCATATCTGGAGTTGGCTTTGTCGGCACTTAA 1659
|||||||||| |||| ||||||||||||||||||||||||
Sbjct 1620 TGCTTTTCTCGTATCCGGAGTTGGCTTTGTCGGCACTTAA 1659
> Ahg905719 jgi|Araly1|905719|Al_scaffold_0003_2847
Length=969
Score = 1218 bits (659), Expect = 0.0
Identities = 854/940 (91%), Gaps = 45/940 (5%)
Strand=Plus/Plus
Query 108 GAAGCTTGAAACATCCATAAATGGTGCGAGGATAAGCTTCGACACGACATGGACACGAGA 167
|||||||||| ||||| | ||||||| |||||||||| ||||||| ||||||||||||||
Sbjct 27 GAAGCTTGAAGCATCCGTTAATGGTGTGAGGATAAGCATCGACACAACATGGACACGAGA 86
Query 168 ATTTAGGAGCTTATTTATAGTTCCCTTATTCAAGTGTTTGGTGGCTTTTTGTTTGATAAT 227
||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 87 ATTGAGGAGCTTCCTTATAGTTCCCTTATTCAAGTGTTTGGTGGCTCTTTGTTTGATAAT 146
Query 228 CTCCCTCTTAGTTTTCATAGAGGGTATATACATGAACCTTGTAGTACTCTACGTCAAGGT 287
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 147 CTCCCTCTTAGTTTTCATAGAGGGTATATACATGAACCTTGTAGTGCTCTACGTCAAGTT 206
Query 288 GTTTGAGCGAAAACCCGAAAAAGTTTATAGATGGGAGGCGATGCAAGAGGACATTGAGCT 347
|||| ||||||||||||||||| | || | || |||| |||||| ||||||||||||||
Sbjct 207 GTTTAAGCGAAAACCCGAAAAA-TCTACAAATAGGAGCCGATGCCGGAGGACATTGAGCT 265
Query 348 TGGACATGAAACCTACCCCATGGTCCTTGTCCAAATTCCAATGTACAACG-AAAA-A-G- 403
||||||||||||||||||||||||||||| ||||||||||||||||||| |||| | |
Sbjct 266 CGGACATGAAACCTACCCCATGGTCCTTGTTCAAATTCCAATGTACAACGAAAAAGAGGT 325
Query 404 --------A-G------GTCCTTCAATTATCTATAGGTGCTGCATGTAGACTAATATGGC 448
| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 326 ATATCTACATGTATTCAGTCCTTCAATTATCTATAGGTGCTGCATGTAGACTAATCTGGC 385
Query 449 CATTGGACCGCCTAATTGTTCAAGTTTTAGATGATTCCACTGATCAAACCATC------- 501
|||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 386 CATTGGACCGCCTAATTGTTCAAGTTCTAGATGATTCCACTGATCAAACCATCAAGAAGT 445
Query 502 A-AG----G------A---GCTGGTGAACACAGAGTGTGCAAAATGGGAAAGCAAAGGTG 547
| || | | |||||||||||||||||||||||| ||||||||| |||| |
Sbjct 446 ATAGAACTGAATTTCAGGGGCTGGTGAACACAGAGTGTGCAAAGTGGGAAAGCCAAGGCG 505
Query 548 TAAATATAAAGTGTGAGAGGAGAGACAACAGAAATGGCTACAAAGCCGGAGCTCTTAAAG 607
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 506 TAAATATAAAGTGTGAGAGGAGAGACAACAGAAATGGCTATAAAGCCGGAGCTCTTAAAC 565
Query 608 AAGGCATGAAGCACAACTACGTGAAGCTATGCA-ATTATGTCGTCATCTTCGACGCAGAC 666
||||||||||||||||||||||||||||||||| | ||||| |||||||| |||||||||
Sbjct 566 AAGGCATGAAGCACAACTACGTGAAGCTATGCAGA-TATGTTGTCATCTTTGACGCAGAC 624
Query 667 TTCCAACCGGAGCCTGATTACCTCCAACACTCTGTCCCCTTCCTCGTTCATAACCCCGAG 726
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 625 TTTCAACCGGAGCCTGATTACCTCCAACGCTCTGTCCCCTTCCTCGTTCATAACCCCGAG 684
Query 727 GTCGCTCTGGTTCAAGCCCGATGGAGATTCATGAACGCAAACAAGTGCTTGATGACGAGG 786
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 685 GTCGCTCTTGTTCAAGCCCGATGGAGATTCATGAACTCAAACAAGTGCTTGATGACGAGG 744
Query 787 ATGCAAGAGATGTCCCTCAACTACCACTTTATGGCAGAGCA-AGAATCTGGATCCACTAG 845
||||||||||||||||||||||||||||| ||||| || | ||||||||||||||||||
Sbjct 745 ATGCAAGAGATGTCCCTCAACTACCACTTCATGGCGGA-AATAGAATCTGGATCCACTAG 803
Query 846 ACATGCCTTCTTTAGCTTCAATGGAACTGCGGGTGTATGGAGAATGGCCGCGATGGAAGA 905
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 804 ACATGCCTTCTTTAGCTTCAATGGAACTGCGGGTGTATGGAGAATGGACGCAATGGAAGA 863
Query 906 AGCTGGAGGATGGCATGACCGGACTACTGTAGAGGACATGGACTTGGCCGTTCGTGCTGG 965
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 864 AGCTGGAGGATGGCATGACCGGACCACTGTAGAGGACATGGACTTGGCCGTTCGTGCTGG 923
Query 966 TCTTCTCGGCTGGAAATTTGTCTTTCTCAATGACCTCACG 1005
||||||||||||||||||||||||||||||||||||||||
Sbjct 924 TCTTCTCGGCTGGAAATTTGTCTTTCTCAATGACCTCACG 963
> Ahg488470 jgi|Araly1|488470|fgenesh2_kg.6__1604__AT5G16190.1
Length=1332
Score = 1199 bits (649), Expect = 0.0
Identities = 1119/1346 (83%), Gaps = 32/1346 (2%)
Strand=Plus/Plus
Query 328 ATGCAAGAGGACATTGAGCTTGGACATGAAACCTACCCCATGGTCCTTGTCCAAATTCCA 387
|||||||||||||| ||||| ||| || ||| || |||||||| ||||||||||| |||
Sbjct 1 ATGCAAGAGGACATGGAGCTCGGAAATCAAAACTTTCCCATGGTTCTTGTCCAAATCCCA 60
Query 388 ATGTACAACGAAAAAGAGGTCCTTCAATTATCTATAGGTGCTGCATGTAGACTAATATGG 447
|||||||| ||| |||||| |||| ||||| || |||||||| || ||||| ||||||
Sbjct 61 ATGTACAATGAACGAGAGGTGTTTCAGTTATCCATTGGTGCTGCTTGCAGACTCATATGG 120
Query 448 CCATTGGACCGCCTAATTGTTCAAGTTTTAGATGATTCCACTGATCAAACCATCAAGGAG 507
|||||||| || ||||| |||||||||||||||||||||||||||| ||||||| |||
Sbjct 121 CCATTGGAGCGACTAATCGTTCAAGTTTTAGATGATTCCACTGATCCCACCATCATGGAA 180
Query 508 CTGGTGAACACAGAGTGTGCAAAATGGGAAAGCAAAGGTGTAAATATAAAGTGTGAGAGG 567
||||||||| |||||||| |||||||| || |||||| | || ||||| |||||||||
Sbjct 181 ATGGTGAACATAGAGTGTGGAAAATGGGCAACCAAAGGCATTAACATAAAATGTGAGAGG 240
Query 568 AGAGACAACAGAAATGGCTACAAAGCCGGAGCTCTTAAAGAAGGCATGAAGCACAACTAC 627
||||| || ||||||||||| || || |||||||||||| |||| |||| ||| | |||
Sbjct 241 AGAGATAATAGAAATGGCTATAAGGCTGGAGCTCTTAAACAAGGTATGAGGCATAGTTAC 300
Query 628 GT-GAAGCTATGCAATTATGTCGTC-ATCTTCGACGCAGACTTCCAACCGGAGCCTGATT 685
|| || | ||||| || | | | |||||||| || |||||||| || |||||||| |
Sbjct 301 GTCAAAAC-ATGCACCTACATTG-CAATCTTCGATGCCGACTTCCAGCCAGAGCCTGACT 358
Query 686 ACCTCCAACACTCTGTCCCCTTCCTCGTTCATAACCCCGAGGTCGCTCTGGTTCAAGCCC 745
|||| |||| |||| || || || | || || ||||| ||||||| |||||||| |
Sbjct 359 ACCTACAACGGACTGTTCCATTTCTTATCCACAATTCCGAGCTCGCTCTTGTTCAAGCTC 418
Query 746 GATGGAGATTCATGAACGCAAACAAGTGCTTGATGACGAGGATGCAAGAGATGTCCCTCA 805
|||||| ||| |||| || || |||||||||||||| |||||||| |||||||||||||
Sbjct 419 GATGGAAATTTGTGAATGCGAAGAAGTGCTTGATGACTAGGATGCAGGAGATGTCCCTCA 478
Query 806 ACTACCACTTT-ATGGCAGAGCAAGAATCTGGATCCACTAGACATGCCTTCTTTAGCTTC 864
| ||||| ||| | ||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 479 ATTACCA-TTTCACGGCAGAGCAAGAATCCGGATCCACTAGACATGCCTTCTTTGGCTTC 537
Query 865 AATGGAACTGCGGGTGTATGGAGAATGGCCGCGATGGAAGAAGCTGGAGGATGGCATGAC 924
||||| ||||| |||||||||||| |||| || ||||||||||| || || ||| | |||
Sbjct 538 AATGGGACTGCTGGTGTATGGAGACTGGCGGCAATGGAAGAAGCCGGTGGTTGGAAAGAC 597
Query 925 CGGACTACTGTAGAGGACATGGACTTGGCCGTTCGTGCTGGTCTTC-TCGGCTGGAAATT 983
|| || || ||||| |||||||||||||||||||||| |||||| | | |||||||||||
Sbjct 598 CGAACCACCGTAGAAGACATGGACTTGGCCGTTCGTGTTGGTCTACAT-GGCTGGAAATT 656
Query 984 TGTCTTTC-TCAATGACCTCACGGTGAAAAGCGAGTTACCAAG-CAAGTTTAAGGCCTTT 1041
|||| ||| ||||||| | |||||||||| ||| ||||||| ||| ||||||| ||||
Sbjct 657 TGTC-TTCGTCAATGATGTTGCGGTGAAAAGTGAGCTACCAAGCCAA-TTTAAGG-CTTT 713
Query 1042 -AGATTCCAGCAACATCGATGGTCTTGTGGTCCAGCTAATCTCTTCAGGAAAATGATTAT 1100
|| |||||||||||||||||||| || |||||||||||||||||||| ||||||| |||
Sbjct 714 CAGGTTCCAGCAACATCGATGGTCATGCGGTCCAGCTAATCTCTTCAGAAAAATGACTAT 773
Query 1101 GGAGATTATTCGCAATAAGAGAGTGACGATTTGGAAGAAGTTGTATCTGGTCTACAGCTT 1160
||| ||||||||||||||||||||||||||||||||||| || ||| || ||||||| ||
Sbjct 774 GGAAATTATTCGCAATAAGAGAGTGACGATTTGGAAGAAATTTTATGTGATCTACAGTTT 833
Query 1161 CTTTTTCTTACGGAAGATCATAGTCCACTGCTTCACTTTTATT-TTCTACTGTGTT-ATT 1218
||||||| || |||||||||||||||| | ||||||||| || ||||| ||| || |||
Sbjct 834 CTTTTTCGTAAGGAAGATCATAGTCCATTTCTTCACTTTC-TTCTTCTATTGT-TTCATT 891
Query 1219 CTTCCTACAAGTGTCTTCTTTCCCGAAGTCAACATTCC-AGCTTGGTCAACTTTTTACAT 1277
||||||| || || ||||||||||||||||||||||| | ||||||||||| ||||| |
Sbjct 892 CTTCCTATGAGCGTATTCTTTCCCGAAGTCAACATTCCGA-CTTGGTCAACTGTTTACTT 950
Query 1278 TCCCTCTATGATCACTCTCTGCATTGTCATTGCGACACCAAGATCATTCTACCTCGTGAT 1337
||| | |||||||||||| | || || |||||||||||| |||| || |||||||||||
Sbjct 951 TCCTTTTATGATCACTCTATTCAATGCCATTGCGACACCGCGATCTTTTTACCTCGTGAT 1010
Query 1338 ATTTTGGATCTTGTTTGAAAACGTAATGTCTATGCACCGGACAAAAGGAACTTTCATCGG 1397
|||||| |||| || ||||| |||||| ||||||| ||||| ||||| |||||||||||
Sbjct 1011 TTTTTGGGTCTTATTCGAAAATGTAATGGCTATGCATCGGACCAAAGGCACTTTCATCGG 1070
Query 1398 CATACTCGAAAGACAAAGAGTGAACGAATGGGTTGTCACTGAGAAATTAGGAGATGCTCT 1457
|||| ||| || ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1071 TTTACTTGAAGGAGGGAGAGTGAACGAATGGGTCGTCACCGAGAAATTAGGAGATGCTCT 1130
Query 1458 TAAGACTAAGCTACTTCCT-AGGATTGGAAAACCTAG-TAACATGTTTCTTGAAAG-AGT 1514
|||||||| ||||||| | | | |||||||| | || |||||| || || | |
Sbjct 1131 CGAGACTAAGTTACTTCCCCAAG-TCAGAAAACCTCGCTATGG-GTTTCTCGACAGGA-T 1187
Query 1515 AAACTCCAAGGAGATAATGGTGGGGATATACATCTTGTGTTGTGCTTGCTATGGACTTT- 1573
|||||| |||||||| ||||| ||||||||||| ||||||||||| | |||| || ||
Sbjct 1188 AAACTCAAAGGAGATGATGGTCGGGATATACATATTGTGTTGTGCCTCCTATA-ACCTTG 1246
Query 1574 TCTTTGGGAACACATTGTTATATCTCTATCTCTT-CATGCAAGCGGTTGCTTTTCTCATA 1632
|||||||||| |||||||||||| | ||||| || |||||| || |||||||| | ||
Sbjct 1247 TCTTTGGGAAGACATTGTTATATATTTATCT-TTACATGCAGGCTCTTGCTTTTATTAT- 1304
Query 1633 T-CTGGAGTTGGCTTTGTCGGCACTT 1657
| | ||| |||| ||||| || ||||
Sbjct 1305 TGCCGGAATTGGTTTTGTAGGAACTT 1330
> Ahg946577 jgi|Araly1|946577|scaffold_702806.1
Length=1702
Score = 898 bits (486), Expect = 0.0
Identities = 1135/1442 (79%), Gaps = 69/1442 (5%)
Strand=Plus/Plus
Query 196 TTCAAGTGTTTGGTGGCTT-TTTGTTTGATAATCTCCCT-CT-TAGTTTTCATAGAGGGT 252
|||||| ||||||||| || | |||||| | ||| || | |||| ||| | ||| ||
Sbjct 222 TTCAAGGGTTTGGTGG-TTATGTGTTTGGT--TCTATCTATTATAGTGTTCTTCGAGAGT 278
Query 253 ATATACATGAACCTTGTAG-TACTCTACGTCAAGGTGTTTGAG-CGAAAACCCGAAAAAG 310
| ||||||||| |||| | |||||| ||||||| | ||| || || |||||| | ||||
Sbjct 279 TTTTACATGAACTTTGT-GATACTCTTCGTCAAGTTATTT-AGACGTAAACCCCATAAAG 336
Query 311 TTTATAGATGGGAGGCGATGCAAGAGGACATTGAGCTTGGACATGA-AACCTACCCCATG 369
| || | ||||||||| |||||||| || ||||| |||||| || || |||||| |||
Sbjct 337 TGTACAAATGGGAGGCCATGCAAGAAGATGTTGAGGTTGGACCCGATAA-CTACCCAATG 395
Query 370 GTCCTTGTCCAAATTCCAATGTACAACGAAAAAGAGGTCCTTCAATTATCTATAG-GTGC 428
|| ||| ||||||| ||||||||||| |||||||||||| ||||||||||||||| | ||
Sbjct 396 GTTCTTATCCAAATACCAATGTACAATGAAAAAGAGGTCTTTCAATTATCTATAGCG-GC 454
Query 429 TGCATGTAGACTAATATGGCCATTGGA-CCGCCTAATTGTTCAAGTTTTAGATGATTCCA 487
|||||| | | |||||| | ||||||| | ||||||||| |||||||||| |
Sbjct 455 AATATGTAGTTTGGTCTGGCCA-CCAAGCCGCCTAGTAGTTCAAGTTGTAGATGATTCTA 513
Query 488 CTGATCAAACCATCAA-GGAGCTG-GTGAACACAGAG-TGTGCAAAATGGGAAAGCAAAG 544
| |||| || | || ||| | | ||| ||| |||| | |||||||||| ||||| |||
Sbjct 514 CGGATCCGGCCGT-AAGGGA-CGGTGTGGACATAGAGAT-TGCAAAATGGCAAAGCCAAG 570
Query 545 GTGTAAATATAAAGTGTGAGAGGAGAGACAACAGAAATGGCTACAAAGCCGGAGCTCTTA 604
| |||| |||| |||||| |||||||| || || || ||||| ||||| |||||| | |
Sbjct 571 GCATAAACATAAGGTGTGAAAGGAGAGATAATAGGAACGGCTATAAAGCTGGAGCTATGA 630
Query 605 AAGAAGGC-ATGAAGCACAACTACGTGAAGCTATGCAATTAT-GTCGTCA-TCTTCGACG 661
||||| || | | ||| | |||||| |||| |||| ||| | || | || ||||||| |
Sbjct 631 AAGAA-GCTCTTACGCATAGCTACGTCAAGCAATGCGATT-TCGTAG-CAGTCTTCGATG 687
Query 662 CAGACTTCCAACCGGAGCCTGATTACCTCCA-ACACTCTGTCCCCTTCCTCGTTCATAAC 720
| || |||||||| ||||| |||||||| || | | | |||||||| || || || |||
Sbjct 688 CCGATTTCCAACCAGAGCCCGATTACCT-CATCCGCGCCGTCCCCTTTCTTGTCCACAAC 746
Query 721 CCCGAGGTCGCTCTGGTTCAAGCCCGATGGAGATTCATGAACGCAAACAAGTGCTTGATG 780
|| || || ||||| |||||||||||||||| ||| | ||||| ||||| || ||||||
Sbjct 747 CCTGACGTTGCTCTCGTTCAAGCCCGATGGATATTTGTTAACGCGAACAAATGTTTGATG 806
Query 781 ACGAGGATGCAAGAGATGTCCCTCAACTACCACTTT-ATGGCAGAGCAAGAATCTGGATC 839
|||||||||||||||||||| |||||||| || ||| | || || |||||||| || ||
Sbjct 807 ACGAGGATGCAAGAGATGTCTCTCAACTATCA-TTTCAAGGTGGAACAAGAATCAGGGTC 865
Query 840 CACTAGACATGCCTTCTTTAGCTTCAATGGAACTGCGGGTGTATGGAGAATGGCCGCGAT 899
||||||||||| ||||| | || |||||||| ||||||||||||||||| | || ||
Sbjct 866 GACTAGACATGCTTTCTTCGGATTTAATGGAACCGCGGGTGTATGGAGAATATCGGCAAT 925
Query 900 GGAAGAAGCTGGAGGATGG-CATGACCGGACTACTGTAGAGGACATGGACTTGGCCGTTC 958
||||| ||| ||||||||| || | |||| || |||||||||||||||||||| ||||
Sbjct 926 GGAAGCAGCAGGAGGATGGAAATCA-AGGACCACAGTAGAGGACATGGACTTGGCTGTTC 984
Query 959 GTGCTGGTCTTCTCGGCTGGAAATTTGTCTTTCTCAATGACCTCACGGTGA-AAAGCGAG 1017
||| |||||||| ||||||||||||||||| || || ||||||||||||| ||| ||||
Sbjct 985 GTGTTGGTCTTCACGGCTGGAAATTTGTCTACCTTAACGACCTCACGGTGAGAAA-CGAG 1043
Query 1018 -TTACCAAGCAAGTTTAAGGCCTTTAGATTCCAGCAACATCGATGGTCTTGTGGTCCAGC 1076
|| |||||||| || ||||||| ||||||||||||||| | ||||| ||||| || ||
Sbjct 1044 CTT-CCAAGCAAATTCAAGGCCTACAGATTCCAGCAACATAGGTGGTCCTGTGGCCCGGC 1102
Query 1077 TAATCTCTTCAGGAAAATGATTATGGAGATTATTCGCAATAAGAGAGTGA-CGATTTGGA 1135
||||| || || ||||||| |||||||| ||||| ||||||||||| | | || ||||
Sbjct 1103 GAATCTATTTAGAAAAATGACGATGGAGATCATTCGTAATAAGAGAGT-ATCAATATGGA 1161
Query 1136 AGAAGTTGTATCTGGTCTACAGCTTCTTT-TTCTTACGGAAGA-TCATAGTCCACTGCTT 1193
||||||| ||| || |||||||||| ||| ||| || ||| | | ||| |||| |||
Sbjct 1162 AGAAGTTCTATGTGATCTACAGCTT-TTTCTTCGTA-AGAAAAGTGGCAGTACACTTCTT 1219
Query 1194 CACTTTTATT-TTCTACTGTGTTATTCTTCCTACAAGTGTCTTCTTTCCC-GAAGTCAAC 1251
|| || || ||||||||| | ||| | || |||||||||||| ||||| ||| || ||
Sbjct 1220 GAC-ATTCTTCTTCTACTGTATAATTGTGCCAACAAGTGTCTTC-TTCCCTGAAATCTAC 1277
Query 1252 ATTCCAGCTTGGTCAACTTTTTACATTCCCTCTATGATCACTCTC-TGCATTGTCATTGC 1310
|| ||| ||||||| || |||||||||||||| |||||||| || | || ||| ||
Sbjct 1278 ATCCCATCTTGGTCTACCATTTACATTCCCTCTTTGATCACTATCTTCCA-CACCATGGC 1336
Query 1311 GACACCAAGATCATTCTACCTCGTGATATTTTGGATCTTGTTTGAAAACGTAATGTCTAT 1370
|| |||||||| ||||||||||||||||||||||||||||| || || |||||| ||||
Sbjct 1337 AACTCCAAGATCCTTCTACCTCGTGATATTTTGGATCTTGTTCGAGAATGTAATGGCTAT 1396
Query 1371 GCACCGGACAAAAGGAACTTTCATCGGCATACTCGAAAGACAAAGAGTGAACGAATGGGT 1430
||| || || |||||||| | ||| ||| |||| ||| || ||||||||||||||||||
Sbjct 1397 GCATCGAACCAAAGGAACGTGCATTGGCCTACTTGAAGGAGGAAGAGTGAACGAATGGGT 1456
Query 1431 TGTCACTGAGAAATTAGGAGATGCTCTTAA-GACTAAGCTACT-TC-CTAGGATTGGAAA 1487
||| || || ||||||||||||||| |||| || ||||||||| || | ||| | | |
Sbjct 1457 TGTGACCGAAAAATTAGGAGATGCT-TTAAAGAATAAGCTACTCTCGC-AGG-TCGTCCA 1513
Query 1488 ACCTAGTAACATGTT-TCT-TGAAAGAGTAAACTCCAAGGA-GATAATGGTGGGGATATA 1544
| || || || || | | ||| ||||| || || ||||| | | ||||||||| | ||
Sbjct 1514 A---AGGAA-ATCTTGT-TATGAGAGAGTGAATTCAAAGGAAG-TGATGGTGGGGGTGTA 1567
Query 1545 CATCTT-GTGTTGTGCT-TGCTATGGACTTTTCTTTGGGAACACATTGTTATATCTCTAT 1602
||| || | | ||||| | |||||| || ||| ||| |||||| |||| || |||||
Sbjct 1568 CATATTAG-GATGTGCACT-CTATGGCCTGATCTATGGCCACACATGGTTACATTTCTAT 1625
Query 1603 CT 1604
||
Sbjct 1626 CT 1627
> Ahg915048 jgi|Araly1|915048|Al_scaffold_0009_17
Length=1569
Score = 795 bits (430), Expect = 0.0
Identities = 750/903 (83%), Gaps = 27/903 (3%)
Strand=Plus/Plus
Query 112 CTTGAAA-CATCCATAAATGGTGCGAGGATAAGCTTCGACACGACATGGACACGAGAATT 170
||| ||| ||||| | || ||| | |||||||| | ||||| | ||| | |||||
Sbjct 82 CTT-AAAGCATCCGTGGATAGTGTGGGGATAAGCATGGACACTATGTGG--A-GAGAAAC 137
Query 171 TAGGAGCT-TATTTATAGTTCCCTTATTCAAGTGTTTGGTGGCTTTTTGTTTGATAATCT 229
||||| | || | |||||||| | ||||||||| |||||||| | |||||| | || |
Sbjct 138 AAGGAG-TGTACTCATAGTTCCAGTGTTCAAGTGTGTGGTGGCTATGTGTTTGGTCATAT 196
Query 230 CCCTCTTAG-TTTTCATAGAGGGTATATACATGAACCTTGTAGTACTCTACGTCAAGGTG 288
| | || | ||||||| ||| || | |||||||||||||||||||||||||||||| ||
Sbjct 197 CATTATT-GATTTTCATGGAGAGTGTTTACATGAACCTTGTAGTACTCTACGTCAAGTTG 255
Query 289 TTTGAGCGAAAACCCGAAAAAGTTTATAGATGGGAGGCGATGCAAGAGGACATTGAGCTT 348
||| | |||||||| || || || |||| ||||||||| ||||| || || || ||||||
Sbjct 256 TTTAACCGAAAACCTGAGAAGGTCTATAAATGGGAGGCAATGCAGGAAGATATGGAGCTT 315
Query 349 GGACATGAAACCTACCCCATGGTCCTTGTCCAAATTCCAATGTACAACGAAAAAGAGGTC 408
|| ||| ||| ||| || ||||||||||||||||||||||||||||||||| |||||||
Sbjct 316 GGTCATCAAAACTATCCGATGGTCCTTGTCCAAATTCCAATGTACAACGAACGAGAGGTC 375
Query 409 CTTC-AATTATCTATAGGTGCTGCATGTAGACTAATATGGCCATTGGACCGCCTAATTGT 467
||| ||||||||||||||||||| || ||||||| ||||||| |||||||||||| ||
Sbjct 376 -TTCGAATTATCTATAGGTGCTGCGTGCAGACTAACGTGGCCATCGGACCGCCTAATCGT 434
Query 468 TCAAGTTTTAGATGATTCCACTGATCAAACCATCAAGGAGCTGGTGAACACAGAGTGTGC 527
|||||||||||||||||| || |||| | |||||| ||| ||||||| || || |||||
Sbjct 435 TCAAGTTTTAGATGATTCTACCGATCCAGCCATCATGGAACTGGTGAGCATGGAATGTGC 494
Query 528 AAAATGGGAAAGCAAA-GGTGTAAATATAAAGTGTGAGAGGAGAGACAACAGAAATGGCT 586
|||||||| | |||| || |||| ||||||| ||||||| ||||||||||||||||||
Sbjct 495 AAAATGGGCAT-CAAAAGGCATAAACATAAAGTATGAGAGGCGAGACAACAGAAATGGCT 553
Query 587 ACAAAGCCGGAGCTCTTAAAGAA-GGCATGAAGCACAACTACGTGAAGCTA-TGCAATTA 644
|||| || ||||||||||| | | ||||||| ||||| |||||| |||| | ||||| ||
Sbjct 554 ACAAGGCTGGAGCTCTTAA-GCACGGCATGAGGCACAGCTACGTCAAGC-ACTGCAACTA 611
Query 645 TGTCGTCATCTTCGACGCAGACTTCCAA-CCGGAGCCTGATTACCTCCAACACTCTGTCC 703
| | | |||||| || || || ||||| ||| || | || |||||||||| | || |||
Sbjct 612 TTTGGCCATCTTTGATGCTGATTTCCAGTCCG-AGTCAGACTACCTCCAACGCGCTATCC 670
Query 704 CCTTCCTCGTTCATAACCCCGAGGTCGCTCTGGTTCAAGCCCGATGGAGATTCATGAACG 763
|||| || | || ||||| ||||||||||| |||||||| ||||||||||| ||||||
Sbjct 671 CCTTTCTTATCCACAACCCTGAGGTCGCTCTAGTTCAAGCTCGATGGAGATTTGTGAACG 730
Query 764 CAAACA-AGTGCTTGATGACGAGGATGCAAGAGATGTCCCTCAACTACCACTTT-ATGGC 821
| |||| | ||||| ||||||||||| ||||||||||| ||||||||||| ||| |||||
Sbjct 731 CGAACACA-TGCTTAATGACGAGGATCCAAGAGATGTCTCTCAACTACCA-TTTCATGGC 788
Query 822 AGAGCAAGAATCTGGATCCACTA-GACATGCCTTCTTTAGCTTCAATGGAACTGCGGGTG 880
||||||| ||||||||||||| | |||||| |||||| |||| |||||||||||||| |
Sbjct 789 AGAGCAACAATCTGGATCCAC-ACGACATGATTTCTTTGGCTTTAATGGAACTGCGGGAG 847
Query 881 TATGGAGAATGGCCGCGATGGAAGAAGCTGGAGGATGGCATGACCGGACTACTGTAGAGG 940
| ||||||||||| |||||||||||||||||||||||| | |||||||| || || ||||
Sbjct 848 TGTGGAGAATGGCGGCGATGGAAGAAGCTGGAGGATGGAAGGACCGGACGACGGTGGAGG 907
Query 941 ACATGGACTTGGCCGTTCGTGCTGGTCTTCTCGGCTGGAAATTTGTCTTTC-TCAATGAC 999
||||||||||||||||||||| |||||||||||| ||||||||| |||| | ||||||||
Sbjct 908 ACATGGACTTGGCCGTTCGTGTTGGTCTTCTCGGTTGGAAATTTATCTT-CGTCAATGAC 966
Query 1000 CTC 1002
|||
Sbjct 967 CTC 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69781328840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5