BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24090.1
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313254 jgi|Araly1|313254|fgenesh1_pm.C_scaffold_1002034 1504 0.0
Ahg357356 jgi|Araly1|357356|fgenesh1_pg.C_scaffold_8001143 579 2e-164
Ahg887530 jgi|Araly1|887530|Al_scaffold_0243_1 298 7e-80
> Ahg313254 jgi|Araly1|313254|fgenesh1_pm.C_scaffold_1002034
Length=1611
Score = 1504 bits (814), Expect = 0.0
Identities = 978/1055 (93%), Gaps = 20/1055 (2%)
Strand=Plus/Plus
Query 1 ATGAACTGTCTGTCTCATGCGCGTTCATACATTGCCTTGGGACTGCTTAAGAGATCAAGC 60
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1 ATGAACTGTCTGTCTCATGCGCGTTCATATATTTCCTTGGGACTGCTTAAGAGATCAAGC 60
Query 61 TATGTCAGTTCT----A--TTCCGTGGAATGAATGTTTCTTCTATATGCCTTCAAAATCA 114
|||||||||||| | |||| |||||| |||||||||||||||||||||||||||||
Sbjct 61 TATGTCAGTTCTACACACTTTCCATGGAATCAATGTTTCTTCTATATGCCTTCAAAATCA 120
Query 115 TGTTTAAAGCCTGTAGCTGTGAGTAGTGTGTTTGGAATCTGTAGTGTTCATTCTTATTCC 174
||||||||||||| || ||||||||||||||||||||| | |||||||||||||||||||
Sbjct 121 TGTTTAAAGCCTGGAGGTGTGAGTAGTGTGTTTGGAATGTCTAGTGTTCATTCTTATTCC 180
Query 175 TCAAGATCAAAGGCTGTTAAATCAAAGATGTTATCATCAACCGTTGTTTCGGCTGTGGAT 234
|||||||||||| ||| ||||||||||||| ||||| ||||||||||| | || ||||
Sbjct 181 TCAAGATCAAAGTCTGGTAAATCAAAGATG---TCATCTACCGTTGTTTCTGTTGCGGAT 237
Query 235 AAAGA-AAAGGACGCCTTTTTCGTTGTTCGGAAGGGTGATGTTATTGGAATTTATAAGGA 293
||||| ||| | || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 238 AAAGAGAAA-TATGCGTTTTTCGTTGTTCGGAAAGGTGATGTTATTGGAATTTATAAGGA 296
Query 294 TTTGAGTGATTGTCAGGCTCAAGTTGGATCTTCGGTGTTTGATCTTCCGGTTAGTGTTTA 353
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 297 TTTGAGTGATTGTCAGGCTCAAGTTGGATCTTCGGTGTTTGATCTTCCCGTTAGCGTTTA 356
Query 354 TAAGGGATACTCTTTGCCTAAAGACACTGAGGAATATCTCTCTTCTGTTGGGTTGAAGAA 413
|||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||
Sbjct 357 TAAGGGATACTCTTTGCCGAAAGACACTGAGGAATATCTTTCTTCTGTTGGGCTGAAGAA 416
Query 414 ACCACTATATAGTTTAAGAGCTTCAGATTTGAAAGATGATATGTTTGGTGCTCTTACACC 473
|||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||
Sbjct 417 ACCACTATATAGTTTAAGAGCTTCTGACTTGAAAGACGATATGTTTGGCGCTCTTACACC 476
Query 474 ATGTCTTTTCCAGGAGCCAGCTCCTTGTACAGTCAAAGTATCTGAAGATGAGACTACCTC 533
|||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| ||
Sbjct 477 ATGTCTTTTCCAGGAGCCAGCTTCTTGTACAGTCAAAGTATCTGAAGAGGAGGCTACATC 536
Query 534 AGAGACGAAGTCAAAAGATGACAAAAAAGATCAACTTCCTTCAGCTTCTATATCTTATGA 593
||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct 537 AGAGACGAAGTCAAAAGATAACCAAAAGGATCAACTTCCTTCAGCTTCTATATCTTATGA 596
Query 594 TCCTTTGGAAAAGCTTTCAAAGGTGGAGCCATCTGCTTATATATCAGACGAAACTTGCTT 653
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 597 TCCTTTGGAAAAGCTTTCAAAGCTGGAGCCATCTGCTGATATATCAGACGAAACTTGCTT 656
Query 654 TATCGAGTTTGACGGTGCATCAAAGGGAAATCCCGGTCTCTCCGGCGCAGCAGCGGTACT 713
||| || |||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 657 TATTGAATTTGACGGTGCATCAAAGGGAAATCCAGGTCTCTCTGGTGCAGCAGCGGTACT 716
Query 714 GAAAACTGAGGACGGGAGCTTGATTTGTAGAGTGCGTCAAGGTTTGGGAATTGCCACAAA 773
||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 717 GAAAACTGAGGACGGAAGCTTGATTTGCAGACTGCGTCAAGGTTTGGGAATTGCCACAAA 776
Query 774 CAATGCAGCAGAATACCATGCGTTAATCCTAGGATTGAAGTATGCTATTGAGAAAGGTTA 833
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 777 CAATGCAGCAGAATACCACGCGCTAATCCTAGGATTGAAGTATGCTATTGAGAAAGGTTA 836
Query 834 CAAGAATATTAAAGTGAAAGGTGACTCCAAGCTGGTCTGTATGCAGA---------TTAA 884
|||||| |||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 837 CAAGAAAATTAAAGTGAAAGGTGACTCCAAGCTAGTCTGTATGCAGAAACAACAGATTAA 896
Query 885 AGGTCAATGGAAGGTAAACCATGAGGTACTCGCAAAGCTCCACAAGGAAGCAAAACTACT 944
||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |||
Sbjct 897 AGGCCAATGGAAGGTAAACCACGAGGTACTCGCGAAGCTACACAAGGAAGCAAAACAACT 956
Query 945 TTGCAACAAATGTGTCTCTTTTGAGATCAGTCATGTACTAAGGAATTTAAATGCTGATGC 1004
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 957 CTGCAACAAATGTGTCTCTTTTGAGATCAGCCATGTACTAAGGAATTTAAACGCTGATGC 1016
Query 1005 GGATGAGCAGGCAAACTTGGCTGTCCGTCTTCCCG 1039
|||||| ||||||||||||||||||||||||||||
Sbjct 1017 GGATGAACAGGCAAACTTGGCTGTCCGTCTTCCCG 1051
> Ahg357356 jgi|Araly1|357356|fgenesh1_pg.C_scaffold_8001143
Length=969
Score = 579 bits (313), Expect = 2e-164
Identities = 427/481 (89%), Gaps = 11/481 (2%)
Strand=Plus/Plus
Query 562 GATCAACTTCCTTCAGCTTCTATATC--TT-ATGATCCTTTGGAAAAGCTTTCAAAGGTG 618
|||||||||||||||||||| || || || | ||||||||||||||||| | ||| |
Sbjct 484 GATCAACTTCCTTCAGCTTCCATGTCAGTTGTTAATCCTTTGGAAAAGCTTGCTAAGCAG 543
Query 619 GAGCCATCTGCTTATATATCAGACGAAACTTGCTTTATCGAGTTTGACGGTGCATCAAAG 678
||||||||||| ||| ||| | ||||||||| |||| ||||||||||||||||||||
Sbjct 544 AAGCCATCTGCTGATACCTCATATGAAACTTGCATTATTGAGTTTGACGGTGCATCAAAA 603
Query 679 GGAAATCCCGGTCTCTCCGGCGCAGCAGCGGTACTGAAAACTGAGGACGGGAGCTTGATT 738
||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 604 GGAAATCCCGGTCTCTCTGGCGCTGCAGCTGTACTGAAAACTGAGGACGGAAGCTTGATT 663
Query 739 TGTAGAGTGCGTCAAGGTTTGGGAATTGCCACAAACAATGCAGCAGAATACCATGCG-TT 797
|||| | ||||||||||||| ||||||||||||||||||||||||||||| |||| | ||
Sbjct 664 TGTAAAATGCGTCAAGGTTTAGGAATTGCCACAAACAATGCAGCAGAATATCATG-GATT 722
Query 798 AATCCTAGGATTGAAGTATGCTATTGAGAAAGGTTACAAGAATATTAAAGTGAAAGGTGA 857
|||||||||||||||| ||||||| ||||||||||||| ||| |||||||||||| |||
Sbjct 723 AATCCTAGGATTGAAGCATGCTATCGAGAAAGGTTACACGAAAATTAAAGTGAAAACTGA 782
Query 858 CTCCAAGCTGGTCTGTATGCAGATTAAAGGTCAATGGAAGGTAAACCATGAGGTACTCGC 917
||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |
Sbjct 783 CTCCAAGCTAGTCTGTATGCAGATGAAAGGTCAATGGAAGGTAAACCACGAGGTACTCTC 842
Query 918 AAAGCTCCACAAGGAAGCAAAACTACTTTGCAACAAATGTGTCTCTTTTGAGATCAGTCA 977
|||||||||||||||||||||| |||| || || ||||| |||||||||||||||||||
Sbjct 843 GAAGCTCCACAAGGAAGCAAAACAACTTAGCGACCAATGTCTCTCTTTTGAGATCAGTCA 902
Query 978 TGTACTAAGGAATTTAAA-TGCTGATGCGGATGAGCAGGCAAACT-TGGCTG-TCCGTCT 1034
||||||||||||||||| | ||||||||||||| |||||||| | |||||| || ||||
Sbjct 903 AGTACTAAGGAATTTAAACT-CTGATGCGGATGAACAGGCAAA-TATGGCTGCTC-GTCT 959
Query 1035 T 1035
|
Sbjct 960 T 960
Score = 388 bits (210), Expect = 4e-107
Identities = 408/496 (82%), Gaps = 44/496 (9%)
Strand=Plus/Plus
Query 18 TGCGCGTTCATACATTGCCTTGGGACTGCTTAAG-AGATCAAGCTATGTCAGTT--C-TA 73
|||||||||||||||| ||||||| ||||||||| || || ||||||||||||| | ||
Sbjct 9 TGCGCGTTCATACATTTCCTTGGGGCTGCTTAAGAAG-TCCAGCTATGTCAGTTCCCATA 67
Query 74 TTCCGTGGAAT-GAATGTTTCTTCTATATGCCTTCAAAAT-CATGTTTAAAGCCTGTAGC 131
|||| |||||| | ||| |||||||||||||||||||| || ||||||||||| | |
Sbjct 68 TTCCATGGAATCG-ATG---CTTCTATATGCCTTCAAAATACA-GTTTAAAGCCT-T--C 119
Query 132 -TGTGAGTAGTGTGTTTGGAATCTGTAGTGTTCATT-CTTATTCCT-CAAGATCAAAGGC 188
|||| | | || ||||| | | ||||||||||| | |||| || ||||||||||| |
Sbjct 120 ATGTGTG-ACTGCACTTGGACTGTCTAGTGTTCATTGC-TATT-CTACAAGATCAAAGAC 176
Query 189 TGTTAAATCAAAGATGTTATCATCAACCG--T-TGTTTCGGCTGT-GGATAAAGA-AAAG 243
|| |||||||||| || ||| | | | | |||||||| | | ||||||||| |||
Sbjct 177 TGCCAAATCAAAGA--TT-TCAACCGCTGTTTCTGTTTCGGAT-TCGGATAAAGAGAAA- 231
Query 244 GACGCCTTTTTCGTTGTTCGGAAGGGTGATGTTATTGGAATTTATAAGGATTTGAGTGAT 303
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 232 GACGCCTTTTTCGTTGTTCGGAAGGGTGACATTATTGGAATTTATAAGGATTTGATTGAT 291
Query 304 TGTCAGGCTCAAGTTGGATCTTCGGTGTTTGATCTTCCGGTTAGTGTTTATAAGGG-A-- 360
||||| |||||||||||||||||||| | ||||||||| ||||| ||||||||||| |
Sbjct 292 TGTCAAGCTCAAGTTGGATCTTCGGTATATGATCTTCCAGTTAGCGTTTATAAGGGTAAG 351
Query 361 ---TACTCTTTGCCTAAAGACACTGA-GGA--A-TATCTCTCTTCTGTTGGGTTGAAGAA 413
||||| |||| ||||||||| || ||| | ||||| ||| ||||||| |||||||
Sbjct 352 GGATACTCGTTGCTTAAAGACAC-GACGGAGGAGTATCTTTCTAGTGTTGGGCTGAAGAA 410
Query 414 ACCACTATATAGTTTA-AGAGCTTCAGATTTGAAAGATGATATGTTTGGTGCTCTTACAC 472
|||||| ||| |||| ||||||| || || ||||| ||||||||||| ||||||||||
Sbjct 411 ACCACTCTAT-GTTTTTAGAGCTTTTGACTTAAAAGAAGATATGTTTGGAGCTCTTACAC 469
Query 473 CATGTCTTTTCCAGGA 488
| | ||||||||||||
Sbjct 470 CTTTTCTTTTCCAGGA 485
> Ahg887530 jgi|Araly1|887530|Al_scaffold_0243_1
Length=366
Score = 298 bits (161), Expect = 7e-80
Identities = 295/354 (83%), Gaps = 31/354 (9%)
Strand=Plus/Plus
Query 18 TGCGCGTTCATACATTGCCTTGGGACTGCTTAAG-AGATCAAGCTATGTCAGTT--C-TA 73
|||||||||||||||| ||||||| ||||||||| || || ||||||||||||| | ||
Sbjct 30 TGCGCGTTCATACATTTCCTTGGGGCTGCTTAAGAAG-TCCAGCTATGTCAGTTCCCATA 88
Query 74 TTCCGTGGAAT-GAATGTTTCTTCTATATGCCTTCAAAAT-CATGTTTAAAGCCTGTAGC 131
|||| |||||| | ||| |||||||||||||||||||| || ||||||||||| | |
Sbjct 89 TTCCATGGAATCG-ATG---CTTCTATATGCCTTCAAAATACA-GTTTAAAGCCT-T--C 140
Query 132 -TGTGAGTAGTGTGTTTGGAATCTGTAGTGTTCATT-CTTATTCCT-CAAGATCAAAGGC 188
|||| | | || ||||| | | ||||||||||| | |||| || ||||||||||| |
Sbjct 141 ATGTGTG-ACTGCACTTGGACTGTCTAGTGTTCATTGC-TATT-CTACAAGATCAAAGAC 197
Query 189 TGTTAAATCAAAGATGTTATCATCAACCG--T-TGTTTCGGCTGT-GGATAAAGA-AAAG 243
|| |||||||||| || ||| | | | | |||||||| | | ||||||||| |||
Sbjct 198 TGCCAAATCAAAGA--TT-TCAACCGCTGTTTCTGTTTCGGAT-TCGGATAAAGAGAAA- 252
Query 244 GACGCCTTTTTCGTTGTTCGGAAGGGTGATGTTATTGGAATTTATAAGGATTTGAGTGAT 303
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 253 GACGCCTTTTTCGTTGTTCGGAAGGGTGACATTATTGGAATTTATAAGGATTTGATTGAT 312
Query 304 TGTCAGGCTCAAGTTGGATCTTCGGTGTTTGATCTTCCGGTTAGTGTTTATAAG 357
||||| |||||||||||||||||||| | ||||||||| ||||| |||||||||
Sbjct 313 TGTCAAGCTCAAGTTGGATCTTCGGTATATGATCTTCCAGTTAGCGTTTATAAG 366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49941021270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5