BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24100.1
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921468 jgi|Araly1|921468|scaffold_102749.1 2217 0.0
> Ahg921468 jgi|Araly1|921468|scaffold_102749.1
Length=1432
Score = 2217 bits (1200), Expect = 0.0
Identities = 1355/1430 (95%), Gaps = 9/1430 (1%)
Strand=Plus/Plus
Query 55 CTCTGCTTCGTTGAGCTAA-AACAATGGCGGAAACAACTCCCAAAGTGAAAGGCCACGTC 113
||||||||| |||||| || ||||||||||||||||||||||||| | ||||||||||||
Sbjct 1 CTCTGCTTCTTTGAGC-AACAACAATGGCGGAAACAACTCCCAAACTCAAAGGCCACGTC 59
Query 114 GTAATCTTACCATACCCAGTTCAAGGCCACCTAAACCCAATGGTTCAATTCGCTAAACGT 173
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GTAATCTTACCTTACCCAGTTCAAGGCCACCTAAACCCAATGGTTCAATTCGCTAAACGT 119
Query 174 CTAGTCTCCAAAAACGTCAAAGTCACAATCGCCACCACTACCTACACCGCCTCCTCAATC 233
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 120 CTAGTCTCCAAAAACGTCAAAGTCACAATCGCCACCACTACCTACACCGCTTCCTCAATC 179
Query 234 ACAACACCATCACTCTCCGTCGAACCAATCTCCGATGGATTCGATTTCATCCCCATAGGT 293
||||| |||||| |||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 180 ACAACTCCATCAGTCTCCGTCGAACCAATCTCCGACGGATTCGATTTCATCCCCATTGGT 239
Query 294 ATCCCCGGTTTCAGCGTCGATACTTACTCAGAATCCTTCAAGCTCAACGGATCCGAAACC 353
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 ATCCCCGGTTTCAGCGTCGATACTTACTCAGAATCCTTCAAGCTCCACGGATCCGAAACC 299
Query 354 CTAACTCTCCTAATCGAGAAATTCAAATCCACAGATTCACCAATCGATTGCTTAATCTAC 413
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 300 CTAACTCTCCTAATCGAGAAATTCAAATCCACAGATTCACCAATCGATTGTTTAGTCTAT 359
Query 414 GATTCGTTTCTTCCTTGGGGACTTGAAGTTGCTAGATCTATGGAACTTTCAGCTGCTTCT 473
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 GATTCGTTTCTTCCTTGGGGACTTGAAGTTGCTAGATCTATGGATGTTTCAGCTGCTTCT 419
Query 474 TTCTTCACTAATAATCTCACTGTTTGTTCTGTGTTGCGTAAATTCTCTAACGGTGACTTT 533
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 420 TTCTTCACTAACAATCTCACTGTTTGTTCTGTGTTGCGTAAATTCTCTAACGGTGAGTTT 479
Query 534 CCTCTTCCCGCTGATCCTAATTCGGCGCCGTTTCGTA-TCCGTGGCTTACCGTCTTTGAG 592
|||||||||||||||||||||||||||| |||||| | |||||||||| |||||||||||
Sbjct 480 CCTCTTCCCGCTGATCCTAATTCGGCGCGGTTTCG-AGTCCGTGGCTTGCCGTCTTTGAG 538
Query 593 CTACGATGAGTTACCTTCGTTTGTGGGACGTCATTGGTTGACTCATCCTGAGCATGGCAG 652
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 539 CTACGACGAGTTACCTTCGTTTGTGGGGCGTCATTGGTTGACTCATCCGGAGCATGGGAG 598
Query 653 AGTTCTTCTGAATCAGTTTCCTAACCATGAAAATGCTGATTGGTTATTCGTTAATGGCTT 712
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGTTCTTTTGAATCAGTTTCCTAACCATGAAAATGCTGATTGGTTATTCGTTAATGGCTT 658
Query 713 TGAAGGGTTAGAAGAAACACAAGATTGTGAAAATGGTGAGTCTGATGCAATGAAGGCGAC 772
||||| |||||||||||||||||||| ||||||||||||| ||| ||||||| ||| ||
Sbjct 659 CGAAGGTTTAGAAGAAACACAAGATTGCGAAAATGGTGAGTTTGAGGCAATGAGGGCAAC 718
Query 773 GTTGATCGGACCGATGATTCCATCGGCTTATCTTGATGATCGGATG-GAAGATGATAAAG 831
|||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 719 GTTGATCGGACCGATGATTCCATCGGCTTACCTTGATGATCGGATAAGA-GATGATAAAG 777
Query 832 ACTATGGTGCGAGTCTGTTGAAACCGATATCGAAGGAGTGTATGGAGTGGCTTGAGACTA 891
||||||| |||||||| |||||||||||||||||||| |||||||||||||||| |||||
Sbjct 778 ACTATGGGGCGAGTCTTTTGAAACCGATATCGAAGGAATGTATGGAGTGGCTTGGGACTA 837
Query 892 AGCAGGCTCAGTCAGTAGCATTTGTTTCGTTTGGTTCGTTTGGGATTCTCTTTGAGAAGC 951
||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 838 AGCCGGCTCAGTCGGTAGCATTTGTTTCGTTTGGTTCGTTTGGGATTCTGTTTGAGAAGC 897
Query 952 AACTTGCAGAGGTAGCTATTGCGCTACAAGAATCGGATTTGAACTTCTTGTGGGTGATTA 1011
| || || |||||||| ||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 898 AGCTCGCGGAGGTAGCGATTGCTCTACGAGAATCGGATTTGAACTTCTTGTGGGTGATTA 957
Query 1012 AAGAAGCTCATATAGCGAAATTGCCTGAAGGGTTTGTGGAATCGACTAAAGATAGAGCCT 1071
||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 958 AAGAAGCTCATATCGCGAAATTGCCAGAAGGGTTTGTGGAATCGACTAAAGACAGAGCGT 1017
Query 1072 TGTTGGTTTCTTGGTGTAACCAGCTTGAGGTTTTAGCTCATGAATCGATAGGTTGCTTTT 1131
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1018 TGTTGGTTTCTTGGTGTAACCAGCTTGAGGTATTAGCTCATGAATCGATCGGTTGCTTTT 1077
Query 1132 TGACTCATTGTGGTTGGAACTCTACGTTGGAAGGGTTGAGTTTGGGAGTTCCGATGGTTG 1191
|||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct 1078 TGACTCATTGTGGTTGGAACTCGACATTGGAAGGGTTGAGTTTGGGCGTTCCGATGGTTG 1137
Query 1192 GTGTGCCTCAGTGGAGTGATCAGATGAATGATGCTAAGTTTGTGGAGGAAGTTTGGAAAG 1251
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1138 GTGTGCCTCAGTGGAGTGATCAGATGAATGATGCTAAGTTTGTGGAGGACGTTTGGAAAG 1197
Query 1252 TTGGGTATAGAGCGAAAGAGGAAGCTGGGGAAGTAATCGTGAAGAGTGAAGAATTGGTGA 1311
||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 1198 TTGGGTATAGAGCTAAAGAGGAAGCTGGCGAAGTAATTGTGAAGAGCGAAGAATTGGTGA 1257
Query 1312 GGTGTTTGAAAGGAGTGATGGAAGGAGAGAGTAGTGTGAAGATTAGAGAGAGTTCGAAGA 1371
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1258 GGTGTTTGAAAGGAGTGATGGAAGGAGACAGTAGTGTGAAGATTAGAGAAAGTTCGAAGA 1317
Query 1372 AGTGGAAAGATTTGGCTGTGAAGGCAATGAGTGAAGGAGGAAGCTCTGATCGAAGCATTA 1431
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1318 AGTGGAAAGATTTGGCTGTGAAGGCAATGAGTGAAGGAGGAAGCTCTGATCGGAGCATTA 1377
Query 1432 ACGAGTTTATAGAGAGTTTAGGGAAGTAACATTATTGATTCAACTTTGTA 1481
||||||||||||||||||||| |||| |||||| |||| |||||||||
Sbjct 1378 ACGAGTTTATAGAGAGTTTAGTGAAGAAACATT---GATTTAACTTTGTA 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58887518770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5