BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24110.1
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921469 jgi|Araly1|921469|scaffold_102750.1 1474 0.0
> Ahg921469 jgi|Araly1|921469|scaffold_102750.1
Length=1022
Score = 1474 bits (798), Expect = 0.0
Identities = 921/982 (94%), Gaps = 2/982 (0%)
Strand=Plus/Plus
Query 1 ATGAAATCTTTTGGTTTATGTCTGTTTATTCTCGTATCTTCTCCATGTCTCCTTCAAGCC 60
||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 21 ATGAAATCTTTTGGTTTATGTCTGTTTATTCTCCTATCTTCTCCATATATCCTTCAAGCC 80
Query 61 AATCTCTCGTCTGATTATTACACCAAAACATGTCCTGAATTCGAGGAAACACTCGTACAA 120
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 81 AATCTCTCGTCTGATTATTACACCAAAACATGTCCTGAATTCGAGCAAACACTCGTCCAA 140
Query 121 ATCGTCACCGATAAACAAATTGCAGCTCCAACAACAGCTGTC-GGAACACTCCGTCTCTT 179
|||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||||
Sbjct 141 ATCGTCACCGATAAACAAATCGCAGCTCCAACAACAGCCG-CAGGAACACTCCGTCTCTT 199
Query 180 TTTCCACGATTGCATGGTTGATGGCTGCGACGCCTCAATCCTCGTTGCTTCTACTCCACG 239
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 200 TTTCCACGATTGCATGGTCGATGGCTGTGACGCCTCAATCCTCGTTGCTTCTACTCCACG 259
Query 240 TAAAACCTCCGAACGTGACGCCGATATCAACCGTTCTCTTCCTGGAGACGCATTCGACGT 299
||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||||||
Sbjct 260 TAAAACCTCTGAACGTGACGCAGATATCAACCATTCTCTACCTGGAGACGCATTCGACGT 319
Query 300 AATCACACGTATCAAAACCGCCGTCGAGCTAAAATGTCCAAACATTGTTTCTTGCTCCGA 359
|||||||||||||||||||||||| || || |||||||| ||| | ||||||||||| ||
Sbjct 320 AATCACACGTATCAAAACCGCCGTAGAACTCAAATGTCCCAACGTCGTTTCTTGCTCTGA 379
Query 360 TATCCTCGTTGGTGCAACACGTAGTTTAATCTCAATGGTCGGAGGTCCGAGAGTTAACGT 419
|| |||||||||||||||||||| || || |||||||||||||||||||| |||||||
Sbjct 380 CATTCTCGTTGGTGCAACACGTAGCTTGGTCACAATGGTCGGAGGTCCGAGAATTAACGT 439
Query 420 TAAGTTCGGTCGGAAAGATAGTCTTGTCTCTGATATGAATCGTGTTGAAGGAAAACTAGC 479
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 440 TAAGTTCGGTCGGAAAGATAGTCTTGTCTCTGATATGAACCGTGTTGAAGGAAAGCTAGC 499
Query 480 TCGACCTAACATGACTATGGATCATATCATTTCTATTTTCGAGTCTAGTGGTCTGACCGT 539
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||
Sbjct 500 TCGACCTAACATGACTATGGATCATATCATTTCGATTTTTGAATCTAGTGGTCTGACAGT 559
Query 540 TCAAGAAATGGTTGCTCTTGTTGGTGCTCACACCATTGGTTTCTCTCATTGCAAAGAGTT 599
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 560 TCAAGAAATGGTTGCTCTTGTTGGTGCTCACACGATTGGTTTCTCTCATTGCAAAGAGTT 619
Query 600 CGCGAGTCGGATCTTTAACAAGTCTGATCAAAATGGTCCGGTGGAGATGAATCCGAAATA 659
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 620 TGCGAGTCGGATCTTTAACAAGTCCGATCAAAACGGTCCGGTGGAGATGAATCCGAAATA 679
Query 660 CGCGGCGGAGCTGAGGAAGTTGTGTGCGAATTACACCAATGATGAACAGATGTCTGCGTT 719
||| ||||||||||||||| ||||||||||||||||||| || ||| | |||||||||||
Sbjct 680 CGCTGCGGAGCTGAGGAAGCTGTGTGCGAATTACACCAAGGACGAAGAAATGTCTGCGTT 739
Query 720 TAATGACGTTTTTACTCCAGGGAAATTTGATAATATGTATTACAAGAATTTGAAGCACGG 779
|||||| |||||||| || || |||||||| || ||||| ||||||||||||||||| ||
Sbjct 740 TAATGATGTTTTTACCCCTGGAAAATTTGACAACATGTACTACAAGAATTTGAAGCATGG 799
Query 780 TTACGGGTTGCTCCAGTCCGATCACGCGATTGCGTTTGACAACAGGACGCGCTCGCTGGT 839
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 800 TTACGGGTTGCTCCAGTCGGATCACGCGATTGCGTTTGATAACAGGACGCGGTCGCTGGT 859
Query 840 GGATCTTTACGCGGAGGACGAAACGGCGTTCTTTGACGCGTTTGCGAAGGCTATGGAGAA 899
|||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 860 GGATCTTTACGCAGAGAACGAAACGGCGTTCTTTGACGCGTTTGCGAAGGCAATGGAGAA 919
Query 900 AGTTAGTGAGAAGAATGTGAAGACGGGGAAGCTTGGAGAAGTAAGAAGGCGGTGTGATCA 959
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 920 AGTTAGTGAGAAGAATGTGAAGACGGGGAAGCTTGGAGAAGTAAGAAGACGGTGTGATCA 979
Query 960 ATACAATGACTACAAGGGATAA 981
|||||||||||||||||| |||
Sbjct 980 ATACAATGACTACAAGGGGTAA 1001
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36445508652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5