BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24120.1
Length=1717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472672 jgi|Araly1|472672|fgenesh2_kg.1__2626__AT1G24120.1 2525 0.0
> Ahg472672 jgi|Araly1|472672|fgenesh2_kg.1__2626__AT1G24120.1
Length=1646
Score = 2525 bits (1367), Expect = 0.0
Identities = 1535/1613 (95%), Gaps = 23/1613 (1%)
Strand=Plus/Plus
Query 109 GAACCGTCTCGTAGCTCTCTTCCGCCGTCAATTTGAGGTTTCCGGGGAGAGAATTGTAGA 168
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 52 GAACCGTCACGTAGCTCTCTTCCGCCGTCAATTTGAGTTTTCCGGGGAGAGAATTGTAGA 111
Query 169 AATGAAGGAATAATTGGAGAAGATTATTATCACCTCGCTGGAGATTCTATTTTGTTGAAG 228
||||||||||||| | | || |||||||||||||||||||||||||||||
Sbjct 112 AATGAAGGAATAA-T--CG-AG---------ACCTCGCTGGAGATTCTATTTTGTTGAAG 158
Query 229 TGT-GATTGATTATTAGGGGTTTTGGT-TGTGAAGAGAAAATGCCAGGTCATAGATCCAA 286
||| |||||||| ||| ||||||| || ||||||||||||||||||||||||||||||||
Sbjct 159 TGTGGATTGATTCTTA-GGGTTTT-GTGTGTGAAGAGAAAATGCCAGGTCATAGATCCAA 216
Query 287 GTCGGAGAAGAAGGATGCTGATAAGCAGCTCCGTCGGGATCCTTATGAGGTTTTAGGAGT 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 GTCGGAGAAGAAGGATGCTGATAAGCAGCTCCGTCGGGATCCTTATGAGGTTTTAGGAGT 276
Query 347 CTTAAGGAACTCTACCGATCAGGAAATTAAGAGCGCTTACCGGAAATTGGCTCTCAAGTA 406
||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 277 TTTAAGAAACTCTACGGATCAGGAAATTAAGAGCGCTTATCGGAAATTAGCTCTCAAGTA 336
Query 407 CCATCCGGATAAGACTGCAAATGATCCGGTTGCAGCTGACATGTTTAAGGAGGTCACGTT 466
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 337 CCATCCTGATAAGACTGCAAATGATCCGGTTGCGGCTGACATGTTTAAGGAGGTTACGTT 396
Query 467 TTCTTACAACATCTTATCTGATCCGGAGAAACGTCGCCAGTTTGATTCAGCTGGTTTTGA 526
||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 397 TTCCTACAACATCTTATCTGATCCGGAGAAACGTCGCCAGTATGATTCAGCAGGTTTTGA 456
Query 527 GGCTGTTGAAGCAGAAAGCCAAGAGCTGGAGCTAGATCTCTCAAGTTTAGGAGCTGTGAA 586
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 457 GGCTGTTGAAGCAGAAAGCCAAGAGCTGGAGCTAGATCTCTCAAGTTTGGGAGCTGTGAA 516
Query 587 TACTGTGTTTGCAGCTTTGTTTAGCAAACTTGGTGTGCCGATAAAAACATCTGTATCTGC 646
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 517 TACTGTGTTTGCAGCTTTGTTTAGCAAACTTGGTGTCCCAATAAAAACATCTGTATCTGC 576
Query 647 AACTATATTGGAGGAGGCTCTTAATGGCAGAGTTTCAGTTGATCCTCTTGTACTTGGACA 706
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 AACTATTTTGGAGGAGGCTCTTAATGGCAGAGTTTCAGTTGATCCTCTTGTACTTGGACA 636
Query 707 AGCTGTGTCTAAAAAGGTTGAAAAGCAATGTGCACACTTTTATGCTGTCACAATATCAGA 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 AGCTGTGTCTAAAAAGGTTGAAAAGCAATGTGCACACTTTTATGCTGTCACAATATCAGA 696
Query 767 AGAGGAAGTAAGTGCTGGGTTGGTCTGCAGAGTAGAATCATCTAGCAAAAGCAAATTCAA 826
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 AGAGGAAGTAAGTTCTGGGTTGGTCTGCAGAGTAGAATCATCTAGCAAAAGCAAATTCAA 756
Query 827 GCTACTGTATTTTGATCAAGAGGCCAACAGCGGATTAAGCCTAGCCCTGCAGGAGGACAG 886
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 757 GTTACTGTATTTTGATCAAGAGGCCAACAGTGGATTAAGCCTAGCCCTGCAGGAGGACAG 816
Query 887 CAAAAGAACGGGTAAGATAACATCTGCCGGAATGTACTTTCTCGGTTTCCCTGTCTACCG 946
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 CAAAAGAACCGGTAAGATAACATCTGCCGGAATGTACTTTCTCGGTTTCCCTGTCTACCG 876
Query 947 GTTGGATCACACAATTAATTCAATGGCTCAAGCAAAAGATCCAGAAACTGCCTTCTTTAA 1006
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 877 GTTGGATCACACAGTTAATTCAATGGCTCAAGCAAAGGATCCAGAAACTGCCTTCTTTAA 936
Query 1007 AAAGCTTGATGGTTTTCAGCAATGTGAGGTAACCGAGCTAAAGGCCGGCACGCATGTCTT 1066
|||||||||||| |||||||||||||| || |||||||||||||| ||||| ||||||||
Sbjct 937 AAAGCTTGATGGATTTCAGCAATGTGAAGTTACCGAGCTAAAGGCTGGCACTCATGTCTT 996
Query 1067 TGCTGTCTATGGTGATAACTTTTTTAAAAATGTGAGCTACACAATCCAAGTCCTGTGTGC 1126
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 997 TGCTGTCTATGGTGATAACTTTTTTAAAAGCGTGAGCTACACAATCCAAGTCCTTTGTGC 1056
Query 1127 TGCCGCTTTTACGCAAGAAAAAGAAGACCTCAGGTCTGTAGAAGCTCAGATACTCACTAA 1186
||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||
Sbjct 1057 TGCTGCTTTTACGCAAGAAAAAGAAGAACTTAGGTCTGTAGAAGCTCAGATCCTCACAAA 1116
Query 1187 AAGAGCAGAGCTGGCAAAGTTTGAGACAGAGTACAGGGAAGTACTTGTGCAGTTCACCGA 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 AAGAGCAGAGCTGGCAAAGTTTGAGACAGAGTACAGGGAAGTACTTGTGCAGTTCACCGA 1176
Query 1247 TATGACCAGTCGATACGCTCAAGAAATGCAATCGATCGATGAGCTCTTAAAGCAGAGAAA 1306
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1177 TATGACCAGTCGATACGCTCAGGAAATGCAATCGATCGATGAGCTTTTAAAGCAGAGAAA 1236
Query 1307 TGAAATTCACTCAGCATACACGACGATTCCATTGATGAAGCGGAGCTCGAGCAAGAACAG 1366
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1237 TGAAATTCACTCAGCATACACAACAATTCCATTGATGAAGCGGAGCTCGAGCAAGAACAG 1296
Query 1367 GATGAGAAAGAGCTCATTCAAGAAGGCGGCGGCTAAGGCGCCTGCTCCAACTgaacagga 1426
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1297 GCTGAGAAAGAGCTCATTCAAGAAGGCAGCGGCTAAGGCGCCTGCTCCAACTGAACAAGA 1356
Query 1427 agaagaggaagaggaagaggaagaagaagaggaagaaagcagcagacagaagaacaagaa 1486
|||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1357 AGAAGATGAAGATGAAGAGGAAGAGGAAGAAGAAGAAAGCAGCAGACAGAAGAACAAGAA 1416
Query 1487 ACCAAGTACTTGTGATAAGTCCGAGACACTAAAGAAGAAGAGCAAATGGTTCAATTTACA 1546
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 ACCAAGTACTTGTGATAGGTCCGAGACACTAAAGAAGAAGAGCAAATGGTTCAATTTACA 1476
Query 1547 TTTGAAATTGGACAAGAAAAAACCTTGTTAGTT-TCTTCATCACTTTTATCAAAGAAA-- 1603
||||||||||||||||||||||||||||||||| | || ||| ||||||| ||| |||
Sbjct 1477 TTTGAAATTGGACAAGAAAAAACCTTGTTAGTTCTTTT-ATCTCTTTTATAAAA-AAATC 1534
Query 1604 AAGATTCTTATCCATTATTTTTCTCCCTTACCTTAGGGATCGGTGTATCTGTAAATCTTT 1663
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1535 AA-ATTCTTATCCATTATTTTTCTCCCTTACCGTAGGGATCGGTGTATCTGTAAATCTTT 1593
Query 1664 TGCTATTTTTCTCCTTCAACTTATCATTAGTATTAGTCAACAATTTTATTTTG 1716
|||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1594 TGCTATTTTTCTCCTTCAACTTATTATTAGTATTAGTCAACAATTTTATTTTG 1646
Score = 86.1 bits (46), Expect = 8e-16
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 28 CTCTCACCTTCCTCCGACGATTTCTCCTTTGACAGTTCAGTCTTATCTCTCG 79
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCACCTTCCTCCTCCGATTTCTCCTTTGACAGTTCAGTCTTATCTCTCG 52
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64410604295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5