BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24140.1
Length=1343
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921472 jgi|Araly1|921472|scaffold_102753.1 1700 0.0
Ahg476141 jgi|Araly1|476141|fgenesh2_kg.2__1271__AT1G70170.1 460 9e-129
> Ahg921472 jgi|Araly1|921472|scaffold_102753.1
Length=1205
Score = 1700 bits (920), Expect = 0.0
Identities = 1115/1209 (92%), Gaps = 14/1209 (1%)
Strand=Plus/Plus
Query 83 TTTTAATATTTCTCTTTTGGATGGTGAGGATTTGTGTTTTCATGGTTTTCTTGTTGTTCT 142
||||||| ||| | ||| ||| ||||||||| ||||| | ||||||||||| ||||||
Sbjct 1 TTTTAATCTTTTTGTTTCAAATGATGAGGATTTATGTTTCCGTGGTTTTCTTGGTGTTCT 60
Query 143 TCGCTCCTTCTCCAGTCTCCGCTGGTTTCTATACAAACTCCTCAGCCATTCCGCCGCAGC 202
| | ||||||||||||||| ||||||||||| | ||||||||||||||||||||| |||
Sbjct 61 TTGTTCCTTCTCCAGTCTCTGCTGGTTTCTACCCCAACTCCTCAGCCATTCCGCCGGAGC 120
Query 203 TTCTCCGAAACGCCACCGGGAACCCCTGGAACTCATTCTTGAATTTCACTGGATGTCACG 262
||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 121 TTCTCCGTAACGCCACCGGAAACCCCTGGAACTCATTCTTGAATTTCACCGGATGTCATG 180
Query 263 CCGGCAAGAAGTACGATGGTCTCTATATGCTCAAACAATATTTTCAACATTTTGGCTACA 322
|||||||||| |||||||||||||| | ||| ||||||||||| ||||||||||||||||
Sbjct 181 CCGGCAAGAAATACGATGGTCTCTACAAGCTTAAACAATATTTCCAACATTTTGGCTACA 240
Query 323 TCACCGAAACTAATCTCTCCGGAAACTTCACTGACGACTTCGACGATATTCTCAAGAACG 382
|| || ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 241 TCCCCAAAACTGATCTCTCCGGAAACTTCACAGACGACTTCGACGATATCCTCAAGAACG 300
Query 383 CCGTCGAAATGTACCAGAGAAACTTCCAGCTAAACGTCACCGGAGTACTCGACGAGCTCA 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCGTCGAAATGTACCAGAGAAACTTCCAGCTAAACGTCACCGGAGTACTCGACGAGCTCA 360
Query 443 CTCTCAAACACGTTGTGATCCCACGTTGCGGCAACCCCGACGTAGTCAACGGCACCTCAA 502
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 CTCTCAAACACGTCGTGATCCCGCGTTGCGGCAACCCCGACGTAGTCAACGGCACCTCAA 420
Query 503 CTATGCATAGCGGTAGGAAAACCTTCGAGGTTTCCTTCGCCGGGCGGGGACAACGCTTCC 562
|||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||
Sbjct 421 CTATGCATAGCGGTAGAAAAACCTTCGAGGTCTCCTTCGCCGGGCGGGGACAACACTTCC 480
Query 563 ACGCCGTTAAACACTACTCTTTCTTCCCCGGAGAGCCACGGTGGCCGAGAAATCGTCGTG 622
|| | || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 481 ACACTGTCAAACACTACTCTTTCTTCCCCGGTGAGCCACGGTGGCCGAGAAATCGCCGTG 540
Query 623 ATCTAACCTACGCTTTCGACCCGCGAAACGCGTTGACCGAAGAGGTCAAGAGCGTGTTCT 682
||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |||||||
Sbjct 541 ATCTAACATACGCTTTCGACCCGCGAAACTCGTTGACAGAAGAGGTCAAGAGTGTGTTCT 600
Query 683 CACGCGCTTTCACTCGTTGGGAGGAGGTGACTCCACTAACGTTCACACGCGTGGAGAGGT 742
||||||| ||| ||||||||| |||||||||||||||||||||||| |||||||| ||||
Sbjct 601 CACGCGCGTTCGCTCGTTGGGCGGAGGTGACTCCACTAACGTTCACGCGCGTGGAAAGGT 660
Query 743 TCTCGACCTCTGACATCAGCATCGGATTCTACTCCGGAGAGCACGGAGACGGAGAACCGT 802
|||||||||| ||||| |||||||||||||||||||| || ||||| ||||||||||| |
Sbjct 661 TCTCGACCTCCGACATAAGCATCGGATTCTACTCCGGCGAACACGGCGACGGAGAACCAT 720
Query 803 TCGACGGCCCAATGAGAACGCTAGCACATGCGTTCTCGCCCCCGACGGGACACTTCCATC 862
| |||||||||||||||||||||||||| || |||||||||||||| ||| ||||||| |
Sbjct 721 TTGACGGCCCAATGAGAACGCTAGCACACGCATTCTCGCCCCCGACAGGATACTTCCACC 780
Query 863 TAGACGGAGAAGAGAACTGGATCGTCTCCGGCGAAGGAGGCGACGGTTTTATCTCCGT-G 921
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 781 TAGACGGAGAAGAGAACTGGATCGTCTCCGGTGAAGGAGGCGACGGTTTTATCTCCGTCG 840
Query 922 TCTGAGGCTGTTGATCTAGAATCGGTGGCTGTTCACGAGATTGGACATCTTCTAGGGTTA 981
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 841 A-TGAGGCTGTTGATCTAGAATCGGTGGCTGTTCACGAGATCGGACATCTTCTAGGGTTA 899
Query 982 GGCCATTCCTCGGTAGAAGGTTCGATCATGTATCCAACCATCAGGACGGGTAGGCGTAAA 1041
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 900 GGCCATTCCTCGGTGGAAGGTTCGATCATGTATCCAACCATCAGGACGGGTAGACGTAAA 959
Query 1042 GTTGATTTAACGACCGATGACGTGGAAGGAGTCCAATATTTGTACGGTGCGAATCCTAAC 1101
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 960 GTTGCTTTAACGACCGATGACGTGGAAGGAGTCCAATATTTGTACGGTGGGAATCCTAAC 1019
Query 1102 TTCAATGGTTCTAGATCTCCACCACCGTCCACTCAACAACGAGACACTGGCGATTCTGGT 1161
|| || || |||||||||||| ||||||| |||||||||||||||||||||||||| |||
Sbjct 1020 TTTAACGGCTCTAGATCTCCATCACCGTCTACTCAACAACGAGACACTGGCGATTCCGGT 1079
Query 1162 GCTCCTGGTAGAAGCGACGGTTCTAGATCGGTTTTGACTAATCTACTTCAGtattatttt 1221
||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1080 GCTGCTGGTAGAAACGACGGTTCTAGATCGGTTTTGACTAATCTACTTCTGTATTAT--- 1136
Query 1222 tggattatatttggattatttttgtatttagtgtagatgattggattagttcattaATTT 1281
||| | |||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1137 ---ATT-T----GGATTATTTTCGTATTTAGTGTAGATGATTGGATTAGTTCAT-AATTT 1187
Query 1282 ACAGATTAT 1290
|||||||||
Sbjct 1188 ACAGATTAT 1196
> Ahg476141 jgi|Araly1|476141|fgenesh2_kg.2__1271__AT1G70170.1
Length=1487
Score = 460 bits (249), Expect = 9e-129
Identities = 752/987 (76%), Gaps = 66/987 (7%)
Strand=Plus/Plus
Query 228 CTGGAACTCATTCTTGAATTTCACTGGATGTCACGC-CGG-CAAGAA-GTACGATGGTCT 284
|||| || | |||| ||||| || || |||||| | ||| ||| || || || |||||
Sbjct 246 CTGGGACGCTTTCTCCAATTTTACCGGTTGTCAC-CACGGCCAA-AACGT-TGAAGGTCT 302
Query 285 CTATATGC-TCAAACAATATTTTCAACATTTTGGCTACATCACC-GAAACTAATCTCTCC 342
||| || ||||| |||| || |||| |||||| |||||| || ||||| | | ||
Sbjct 303 CTA-CCGCATCAAAAAATACTTCCAACGTTTTGGTTACATC-CCTGAAAC--GT-TTTCA 357
Query 343 GGAAACTTCACTGACGACTTCGACGATATTCTCAAGAAC-GCCGTCGAAATGTACCAGAG 401
||||| ||||| || || || || ||||| ||||| ||| || || ||| |||| |||||
Sbjct 358 GGAAATTTCACCGATGATTTTGATGATATCCTCAA-AACAGCTGTTGAATTGTATCAGAG 416
Query 402 AAACTTCCAGCTAAACGTCACCGGAGTA-CTCGACGAGCTCACTC-TCAAACACGTTGTG 459
|| ||| |||| ||||| || |||| | ||||| | | || | | |||||| | |||
Sbjct 417 GAATTTCAAGCTTAACGTTACGGGAG-AGCTCGATGCTATGAC-CATTAAACACATCGTG 474
Query 460 ATCCCACGTTGCGGCAACCCCGACGTAGTCAACGGCACCTCAACT-ATGCATAGCGGTAG 518
||||| ||||| || || |||||||| |||||||| || || | |||||| |||| ||
Sbjct 475 ATCCCGCGTTGTGGTAATCCCGACGTGGTCAACGGTACTTC-TTTGATGCATGGCGGGAG 533
Query 519 --GAAA-ACCTTCGAGGTTTCCTTCGCCGGGCGGGGACAACGC--TTCCACGCCGTTAAA 573
|||| ||||||||||| |||| || | | | |||| || ||||| ||||||
Sbjct 534 AAGAAAGACCTTCGAGGTCAACTTCTCC---C---G-C-ACGCATTTGCACGCGGTTAAA 585
Query 574 CACTACTCTTTCTTCCCCGGAGAGCCACGGTGGCCGAGAAATCGTCGTGATC-TAACCTA 632
| |||| | || ||||| || |||||||||||||| ||||| || ||||| | | |||||
Sbjct 586 CGCTACACGTTGTTCCCAGGCGAGCCACGGTGGCCAAGAAACCGCCGTGA-CTTGACCTA 644
Query 633 CGC-TTTCGACCCGCGAAACGCGTTGACCGAAGAGGTCAAGAGCGTGTTCTCACGCGCTT 691
||| ||| |||||| |||| | ||||| |||||||||||||||||||||||||||||||
Sbjct 645 CGCGTTT-GACCCGAAAAACCCCTTGACAGAAGAGGTCAAGAGCGTGTTCTCACGCGCTT 703
Query 692 TCA-CTCGTTGGGAGGAGGTGACTC-CACT-AACGTTCACACGCGTGGAGAGG-TT-CTC 746
|| | |||||| ||| || || | | | ||| ||||| || | || || |||
Sbjct 704 TCGGC-CGTTGGTCGGACGTCAC-CGCGTTGAAC-TTCAC--GCTTTCCGACTCTTTCTC 758
Query 747 GACCTCTGACATCAGCA-TCGGATTCTACTCCGGAGAGCACGGAGACGGAGAACCGTTCG 805
||| || ||||||| || ||||||||||| |||| || ||||| ||||| || || ||||
Sbjct 759 GACGTCCGACATCA-CAATCGGATTCTACACCGGCGATCACGGTGACGGCGAGCCTTTCG 817
Query 806 ACGGCCCAATGAGAACGCT-AGCACATGCGTTCTCGCCCCCGA-CGGGACACTTCCATCT 863
||||| || |||| || ||| || || ||||| || || | ||||| | ||||| ||
Sbjct 818 ACGGCGTTTTGGGAAC-CTTAGCTCACGCTTTCTCTCCTCCTAGCGGGAAA-TTCCACCT 875
Query 864 AGACGGAGAAGAGAACTGGATCGTCTCCGGCGAAGGAGGCGACGGTTTTATCTCCGTGTC 923
||||| ||| ||||||||| | |||||||| || || | | | ||| ||||||| |
Sbjct 876 AGACGCAGACGAGAACTGGGTGGTCTCCGGAGACCTAGAC-A-G-TTTCCTCTCCGTAAC 932
Query 924 TGAGGCTGTTGATCTAGAATCGGTGGCTGTTCACGAGATTGGACATCTTCTAGGGTTAGG 983
|| || |||||||| |||||||| || ||||||||||| || |||||||| || |||||
Sbjct 933 TGCTGCGGTTGATCTTGAATCGGTAGCGGTTCACGAGATCGGTCATCTTCTCGGTTTAGG 992
Query 984 CCATTCCTCGGTAGAAGGTTCGATCATGTATCCAACCATCAGGACGGGTAGGCGTAAAGT 1043
||||| || || |||| || |||||||||||||| |||| |||||| | ||||| ||
Sbjct 993 ACATTCGTCAGTTGAAGAATCCATCATGTATCCAACGATCACGACGGGGAAACGTAAGGT 1052
Query 1044 TGATTTAACGACCGATGACGTGGAAGGAGTCCAATATTTGTACGGTGCGAATCCTAACTT 1103
||| ||||| | ||||||||||||||| ||||||| |||||||| ||||| ||||||||
Sbjct 1053 TGACTTAACCAATGATGACGTGGAAGGAATCCAATACTTGTACGGCGCGAACCCTAACTT 1112
Query 1104 CAATGGTTCTAGATCTCCACCACCGTCCACTCA-ACA--A-CGAGACACTGGCGA-TTCT 1158
||| || | | ||||||||| || ||||| | ||| | ||||||||||| | |||
Sbjct 1113 CAACGGCACAACATCTCCACCGTCGACCACT-AGACACCAGCGAGACACTGGTGGCTTCA 1171
Query 1159 GGTGCT-CCTGGTAGAAGCGACGGTTC 1184
| ||| ||||| |||| |||||||||
Sbjct 1172 G-TGCCGCCTGG-AGAATCGACGGTTC 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50246004606
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5