BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G24147.1

Length=628
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921475 jgi|Araly1|921475|scaffold_102756.1                        490    5e-138


> Ahg921475 jgi|Araly1|921475|scaffold_102756.1
Length=378

 Score =  490 bits (265),  Expect = 5e-138
 Identities = 328/358 (92%), Gaps = 6/358 (2%)
 Strand=Plus/Plus

Query  123  TGTTTTCACTTCATGTGGATGAAGCTCTTGGTGCTCAAACTAAGATCCGCAAACTCAAAG  182
            ||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct  27   TGTTTTCGCTTCATGTGGATGAAGCTCTTGGTGCTCAAACTAAAATCAGCAAACTCAAAG  86

Query  183  AGATGATCACGATGCGGAGGAATTTGGAAGGCAATATTGACTACAGAAGCTCTAAAAGGC  242
            ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| | ||
Sbjct  87   AGATGATCACGATGCGGAGGAATTTGGAAGGAAATATTGACTACAAAAGCTCTAATATGC  146

Query  243  GGACTGGAGGGAGTGTATCAAATCAATGCCGCAGTAAAAGTTATATCGAGATCGTCACCA  302
            ||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||
Sbjct  147  GGACTGGAGGGAGTGTATCGAATCAATGCCACAGCAAAAGTTATATCGAGATCGTCACCA  206

Query  303  CTTATCTTCCTGAATCTGATGATTCGTCCGCCCCCTGTATAAAGTGTAACCACGACTATT  362
            ||||||||||||| |  |||  | ||||| ||||||||||| ||||||||||||||| ||
Sbjct  207  CTTATCTTCCTGA-T--GAT--T-CGTCCTCCCCCTGTATACAGTGTAACCACGACTCTT  260

Query  363  GTTATAGTTGCACCAAGACCAGACAGTGCACACGGTCCACTGGCTCACCCTGGACGTGCA  422
            ||||||||||||||||||||||| |||||| | ||||||||||||||||| ||| |||||
Sbjct  261  GTTATAGTTGCACCAAGACCAGAAAGTGCATATGGTCCACTGGCTCACCCCGGAGGTGCA  320

Query  423  CCGTCACCGAGTTGTGTTGCCTTATAGTATATTCATAGCTTTAGATTTATCGGAGGCA  480
            | |||| |||| |||||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct  321  CAGTCAACGAGGTGTGTTGCCTTATAGTGTATTCATAGCTATAGATTTATCAGAGGCA  378



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22988118951


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5