BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G24148.1

Length=912
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921476 jgi|Araly1|921476|scaffold_102757.1                        460    6e-129


> Ahg921476 jgi|Araly1|921476|scaffold_102757.1
Length=470

 Score =  460 bits (249),  Expect = 6e-129
 Identities = 290/310 (94%), Gaps = 2/310 (1%)
 Strand=Plus/Plus

Query  380  GAAGAGACGATGGTGATGAGGAGGAACAAGAAAGGTAATGGCTTCGTAACCTCCAAAATA  439
            ||||||||||||||||||||| |||||  | |||| |||||||||||||| |||||||||
Sbjct  160  GAAGAGACGATGGTGATGAGGTGGAACTTGGAAGGCAATGGCTTCGTAACTTCCAAAATA  219

Query  440  GATGTTCCACCAAGCGCATCACA-ACATTGCGGGGGAGGTAAACGTTTTAAGAACATGGC  498
            |||| |||||||||||||||  | ||||||||||||||||||||||||| ||||||||||
Sbjct  220  GATGCTCCACCAAGCGCATC-GAGACATTGCGGGGGAGGTAAACGTTTTGAGAACATGGC  278

Query  499  GACCACTAATCGCCATGATGATCAGTTCAGTCCACTTCCAGGAGGCGTCTCTTCCTCCCT  558
            ||||| | |||| |||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct  279  GACCATTGATCGTCATGATGATCAGTTCAGTCCACTTCCAGGAGGCGACTCGTCCTCCCT  338

Query  559  CTGTATAAGATGCGTTACCACCCAACGTTGTGTAGGGGCCGTAGGCGCGCCACGCTCGAC  618
            ||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct  339  CTGTATAAGGTGCGTTACCACCCAACGTTGTGTAGGGGCCGTAGGCGCCCCACCCTCGAC  398

Query  619  GTACACTTGCACTATCATCTCGAAACAGTGTGAAAATATACCTGGCCATTGATCAGGTCA  678
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  399  GTACACGTGCACTATCATCTCGAAACAGTGTGAAAATATACCTGGCCATTGATCAGGTCA  458

Query  679  TAACTTTGAA  688
            ||||||||||
Sbjct  459  TAACTTTGAA  468


 Score =  152 bits (82),  Expect = 4e-36
 Identities = 112/125 (90%), Gaps = 8/125 (6%)
 Strand=Plus/Plus

Query  264  AGAGAGATTTATTAAGA---TGTTGTCGTCGTCAACAGTTTCTTTCATGTTATTTTTTC-  319
            ||||||| |||||||||   |||||| |||||| ||||||||||||||| ||||||||| 
Sbjct  6    AGAGAGAATTATTAAGATGTTGTTGTTGTCGTCTACAGTTTCTTTCATGCTATTTTTTCT  65

Query  320  -CT-CATGT-TT-TCGATTCATATGAATGAAGCTCTTGGTGCTCAAATTGAAATCCGCAA  375
             || | ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  66   TCTCCTTGTGTTATCGATTCATATGAATGAAGCTCTTGGTGCTCAAATTGAAATCCGCAA  125

Query  376  ACTCG  380
            |||||
Sbjct  126  ACTCG  130



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33815027379


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5