BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G24148.1 Length=912 Score E Sequences producing significant alignments: (Bits) Value Ahg921476 jgi|Araly1|921476|scaffold_102757.1 460 6e-129 > Ahg921476 jgi|Araly1|921476|scaffold_102757.1 Length=470 Score = 460 bits (249), Expect = 6e-129 Identities = 290/310 (94%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 380 GAAGAGACGATGGTGATGAGGAGGAACAAGAAAGGTAATGGCTTCGTAACCTCCAAAATA 439 ||||||||||||||||||||| ||||| | |||| |||||||||||||| ||||||||| Sbjct 160 GAAGAGACGATGGTGATGAGGTGGAACTTGGAAGGCAATGGCTTCGTAACTTCCAAAATA 219 Query 440 GATGTTCCACCAAGCGCATCACA-ACATTGCGGGGGAGGTAAACGTTTTAAGAACATGGC 498 |||| ||||||||||||||| | ||||||||||||||||||||||||| |||||||||| Sbjct 220 GATGCTCCACCAAGCGCATC-GAGACATTGCGGGGGAGGTAAACGTTTTGAGAACATGGC 278 Query 499 GACCACTAATCGCCATGATGATCAGTTCAGTCCACTTCCAGGAGGCGTCTCTTCCTCCCT 558 ||||| | |||| |||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 279 GACCATTGATCGTCATGATGATCAGTTCAGTCCACTTCCAGGAGGCGACTCGTCCTCCCT 338 Query 559 CTGTATAAGATGCGTTACCACCCAACGTTGTGTAGGGGCCGTAGGCGCGCCACGCTCGAC 618 ||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 339 CTGTATAAGGTGCGTTACCACCCAACGTTGTGTAGGGGCCGTAGGCGCCCCACCCTCGAC 398 Query 619 GTACACTTGCACTATCATCTCGAAACAGTGTGAAAATATACCTGGCCATTGATCAGGTCA 678 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 399 GTACACGTGCACTATCATCTCGAAACAGTGTGAAAATATACCTGGCCATTGATCAGGTCA 458 Query 679 TAACTTTGAA 688 |||||||||| Sbjct 459 TAACTTTGAA 468 Score = 152 bits (82), Expect = 4e-36 Identities = 112/125 (90%), Gaps = 8/125 (6%) Strand=Plus/Plus Query 264 AGAGAGATTTATTAAGA---TGTTGTCGTCGTCAACAGTTTCTTTCATGTTATTTTTTC- 319 ||||||| ||||||||| |||||| |||||| ||||||||||||||| ||||||||| Sbjct 6 AGAGAGAATTATTAAGATGTTGTTGTTGTCGTCTACAGTTTCTTTCATGCTATTTTTTCT 65 Query 320 -CT-CATGT-TT-TCGATTCATATGAATGAAGCTCTTGGTGCTCAAATTGAAATCCGCAA 375 || | ||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 66 TCTCCTTGTGTTATCGATTCATATGAATGAAGCTCTTGGTGCTCAAATTGAAATCCGCAA 125 Query 376 ACTCG 380 ||||| Sbjct 126 ACTCG 130 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33815027379 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5