BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24150.1
Length=2261
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313260 jgi|Araly1|313260|fgenesh1_pm.C_scaffold_1002040 2244 0.0
> Ahg313260 jgi|Araly1|313260|fgenesh1_pm.C_scaffold_1002040
Length=2286
Score = 2244 bits (1215), Expect = 0.0
Identities = 1415/1509 (94%), Gaps = 23/1509 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGCCATGTTGATGCAGCCATGGCCACCGTTTCTTCCTCATCTAACCCTAGTTTTC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGCTGCCATGTTGATGCAGCCATGGCCACCGTTTCTTCCTCATCTAACCCTAATTTTC 60
Query 61 TTAACCCTAATCCTCTTTTTCCCTAATCAATCCTTTTCTCAATCCGATTCTCCTCGAAAC 120
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TTATCCCTAATCCTCTTTTTCCCTAATCAATCATTTTCTCAATCCGATTCTCCTCGAAAC 120
Query 121 ATCGAAACATTTTTCCCAAATGACACAATCACCCCTCCAGTTCAATCTCCGGTTCTATCG 180
||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||
Sbjct 121 ATCGAAACATTTTTCCCAAATGACACAATCACCGCTCCAGTTCCACCTCCGGTTCTATCA 180
Query 181 CCGCCGCAAAACCCATCATCTTCGTCATCGGATTCAGACAGAGGAAATATCTTGAGGGCT 240
|||||| |||||||| ||||||| | || | || ||||||||||| ||||||||||||
Sbjct 181 CCGCCGGAAAACCCACCATCTTC-T--TC--A-TCGGACAGAGGAAAGATCTTGAGGGCT 234
Query 241 GTGCTTATAACAGCAGCAAGCACTTTACTTGTAGCAGCCGTGTTCTTCTTCCTCGTCCAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GTGCTTATAACAGCAGCAAGCACTTTACTTGTAGCAGCCGTGTTCTTCTTCCTCGTCCAT 294
Query 301 AAATGTAGGCGGAGGAGAAACAGAGTCGGTGGCGTTGACAACACCCTTCAACCACCGGTT 360
|| || |||| ||||||||||||||||| || |||| |||||||| | ||||||||||
Sbjct 295 AAGTGGCGGCGAAGGAGAAACAGAGTCGGCGGTTTTGAGAACACCCTCCCACCACCGGTT 354
Query 361 CCTCCGTTGGCGGAAGCGGCTTTAGCTCGTGAAGGGTTTACTCGATTCGGCGGAAACGTA 420
|||||||| |||||||||||||||||||| |||||||| ||| |||||||||||||||||
Sbjct 355 CCTCCGTTAGCGGAAGCGGCTTTAGCTCGCGAAGGGTTCACTAGATTCGGCGGAAACGTA 414
Query 421 AAGGGTTTGATTCTAGATGAGAATGGTCTCGATGTGTTGTATTGGAGAAAGTTACAACAG 480
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 415 AAGGGTTTGATCCTTGATGAGAATGGTCTCGATGTGTTGTATTGGAGAAAGTT---ACAG 471
Query 481 AGTCAAAGAGATAATAAAGGTGGAAGCTTTAGGAAAGAGATCATCCACGGAGACGATGAA 540
||||| ||||| |||||| |||||||||||| |||||||||| | ||||||||||| |||
Sbjct 472 AGTCAGAGAGACAATAAAAGTGGAAGCTTTAAGAAAGAGATCGTTCACGGAGACGACGAA 531
Query 541 GAGAAGAATGTGATTTATTCGAAGAGTAAGAAGAAATCTGGACCGGTGACGGAGACTCCT 600
||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||
Sbjct 532 GAGAAGAATGTGATTTACTCAAAGAATAAGAAGAAATCTGGACCGGTGACGGAGACTCCT 591
Query 601 CTTCTCAGAGGAAGATCTTCGACTTCTCATAGTGTAATTCACAACGACAATTACCGAAAT 660
||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 592 CTTCTCAGAGGAAGATCATCGACTTCTCATAGTGTAATTCACAACGATAATGACCGAAAT 651
Query 661 G------CCACCACCACTCATCCTCCTCATGTCAAGACTGATTCTTTTGAATTCGTCAAA 714
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GCCACCACCACCACCACTCATCCTCCTCATGTCAAGACTGATTCTTTTGAATTCGTCAAA 711
Query 715 CCAGATCCAACTCCACCACCGCCTCCACCACCGCCAATTCCGGTGAAGCAGAGTGCAACA 774
||||||| |||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 712 TCAGATCCGTCTCCGCCACCGCCACCTCCACCGCCAATTCCGGTGAAGCAGAGTGCAACA 771
Query 775 CCACCACCTCCTCCTCCTCCTAAGCTTAAGAATAATGGTCCATCTCCGCCGCCACCTCCA 834
|| || ||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 772 CCTCCTCCTCCTCCTCCTCCTAAGCCTAAG---AATGGTCCATCTCCGCCGCCACCTCCA 828
Query 835 CCGTTGAAAAAGACGGCGGCTTTGTCATCATCGGCTTCaaaaaaaCCACCACCGGCTCCT 894
|||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||
Sbjct 829 CCGTTGAAAAAGACAGCGGCTTTGTCATCATCGGTTTCGAAAAAACCACCGCCGGCTCCT 888
Query 895 AGAGGATCATCTTCAGGGGAAAGTTCAAATGGTCAGGTAAAGCTTAAGCCTTTACATTGG 954
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGAGGATCATCTTCAGGGGAAGGTTCAAATGGTCAGGTAAAGCTTAAGCCTTTACATTGG 948
Query 955 GATAAAGTCAATCCTGATTCTGATCATTCCATGGTTTGGGACAAAATCGATCGTGGCTCT 1014
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 949 GATAAAGTCAATCCTGATTCTGATCATTCCATGGTTTGGGATAAAATCGATCGTGGCTCA 1008
Query 1015 TTCAGTTTCGATGGCGATCTAATGGAGGCTCTGTTCGGCTACGTGGCGGTCGGAAAGAAA 1074
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1009 TTCAGTTTCGATGGCGATCTAATGGAGGCTCTCTTCGGCTACGTGGCGGTCGGAAAGAAA 1068
Query 1075 TCTCCAGACGACGGCGGTGATAAAAAGCCTAGCTCAGCCTCACCGGCCCAGA-TTTTCAT 1133
|||||||||||||||||||||||||||||||||||||| |||||| |||||| |||| ||
Sbjct 1069 TCTCCAGACGACGGCGGTGATAAAAAGCCTAGCTCAGCTTCACCGACCCAGACTTTT-AT 1127
Query 1134 ACTTGACCCGAGAAAGTCACAGAACACAGCAATTGTGCTCAAATCCTTAGGAATGACTCG 1193
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 ACTTGACCCGAGAAAGTCTCAGAACACAGCAATTGTGCTCAAATCCTTAGGAATGACTCG 1187
Query 1194 TGACGAGCTTGTGGAATCGTTAATGGAAGGTCATGATTTTCATCCAGATACACTAGAGAG 1253
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1188 TGACGAGCTTGTGGAATCGTTAATGGAAGGTCACGATTTTCATCCAGATACACTAGAGAG 1247
Query 1254 ACTCTCTAGAATAGCTCCAACGAAAGAAGAACAATCAGCGATTCTCCAATTCGACGGTGA 1313
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 GCTCTCTAGAATAGCTCCAACGAAAGAAGAACAATCAGCGATTCTCCAATTCGACGGTGA 1307
Query 1314 TACGAAAATGCTCGCAGACGCTGAATCGTTTCT-GTTTCATCTTCTAAAGGCGGTGCCTT 1372
||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||
Sbjct 1308 CACGAAAATGCTCGCAGACGCTGAATCGTT-CTTGTTTCATCTTCTAAAGGCAGTGCCTT 1366
Query 1373 GTGCGTTTACTCGTCTTAATGCGTTACTCTTTAGAGCTAATTACTATCCAGAGATCTCAA 1432
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 GTGCGTTCACTCGTCTTAACGCGTTACTCTTTAGAGCTAATTACTATCCAGAGATCTCAA 1426
Query 1433 ACCATAACAAAAATCTTCAGACGTTGGATTTGGCTTGTACAGAGCTTAGGTCACGTGGCT 1492
||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1427 ACCATAACAAATCTCTCCAGACGTTGGACTTGGCTTGTACAGAGCTTAGATCACGTGGCT 1486
Query 1493 TGTTCAGTG 1501
||||| |||
Sbjct 1487 TGTTC-GTG 1494
Score = 1114 bits (603), Expect = 0.0
Identities = 655/681 (96%), Gaps = 0/681 (0%)
Strand=Plus/Plus
Query 1498 AGTGTTGATGGGAAGACGACTTTGCTTAACTTTGTTGTGGAAGAAGTGGTTAGGTCTGAA 1557
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 1606 AGTGTTGATGGGAAGACGACTTTGCTTAACTTTGTGGTGGAAGAAGTGGTTAGATCAGAG 1665
Query 1558 GGGAAGCGATGCGTGCTTAACCGAAGGACTAACCGTAGCTTTAGCCGTAGTAGCAGCAGT 1617
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1666 GGGAAGCGATGCGTGCTTAACCGAAGGACTAACCGTAGCTTTAGCCGTAGCAGTAGCAGT 1725
Query 1618 TCGATCTCCGAGGTTATATCGAAGGAAGAACAAGAGAAAGAGTATCTTAGACTCGGTTTA 1677
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1726 ACGATCTCCGAGGTTATATCGAAGGAAGAACAAGAGAAGGAGTATCTTAGACTCGGTTTA 1785
Query 1678 CCTGTTGTTGGAGGGTTAAGCTCTGAGTTCACCAATGTTAAGAAAGCTGCAGCTGTAGAC 1737
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1786 CCTGTTGTTGGAGGGTTAAGTTCTGAGTTCACCAATGTTAAGAAAGCTGCAGCTATAGAC 1845
Query 1738 TATGACACTGTTGCTGCAACGTGCTTGGCTCTTACGTCTAGAGCGAAAGATGCTAGACGA 1797
|||||||| |||||||||||||||||||||||| || ||||||||||||| |||||||||
Sbjct 1846 TATGACACAGTTGCTGCAACGTGCTTGGCTCTTGCGGCTAGAGCGAAAGACGCTAGACGA 1905
Query 1798 GTGTTAGCGCAGAGCGAAGGAGATAACAAAGAAGGAGTGAGGTTTGTGAAGAAGATGAAT 1857
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1906 GTGTTGGCGCAGAGCGAAGGAGATAACAAAGAAGGAGAGAGGTTTGTGAAGAAGATGAAT 1965
Query 1858 GAGTTTCTTGATTCGGTTGAGgaagaagtgaagttagcgaaagaagaagagaagaaagtg 1917
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1966 GAGTTTCTTGATTCGGTTGAGGAAGAAGTGAAGTTAGCGAAACAAGAAGAGAAGAAAGTG 2025
Query 1918 ttggagcttgtgaagagaaCAACAGAGTATTATCAAGCAGGAGCTGTGAAAGGAAAGAAT 1977
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2026 TTGGAGCTTGTGAAGAGAACAACAGAGTATTACCAAGCAGGAGCTGTGAAAGGAAAGAAT 2085
Query 1978 CCACTTCATTTGTTTGTTATTGTTAGAGATTTTCTTGCAATGGTTGATAAAGTTTGCGTA 2037
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2086 CCACTTCATTTGTTTGTTATTGTTAGAGATTTTCTTGCAATGGTGGATAAAGTTTGCGTA 2145
Query 2038 GAGATCGCAAGGAATTTGCAGAGGAGGTCATCAATGGGGAGTACTCAGCAGAGGAATGCG 2097
||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||
Sbjct 2146 GAGATCGCAAGGAATTTGCAGAGGAGGGCATCGATGGGGAGTCCTCAGCAGAGGAATGCA 2205
Query 2098 GTTAAGTTTCCGGTTTTGCCTCCGAATTTCATGTCGGATAGATCAAGAAGTGATTCGGGT 2157
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2206 GTGAAGTTTCCGGTTTTGCCTCCGAATTTCATGTCGGATAGATCAAGAAGTGATTCTCGT 2265
Query 2158 GGATCAGATTCCGATATGTGA 2178
|||||||||||||||||||||
Sbjct 2266 GGATCAGATTCCGATATGTGA 2286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85131697575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5