BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24160.1
Length=2037
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472677 jgi|Araly1|472677|fgenesh2_kg.1__2631__AT1G24160.1 2819 0.0
> Ahg472677 jgi|Araly1|472677|fgenesh2_kg.1__2631__AT1G24160.1
Length=1995
Score = 2819 bits (1526), Expect = 0.0
Identities = 1835/1979 (93%), Gaps = 42/1979 (2%)
Strand=Plus/Plus
Query 75 AGCTTGAAAAAGGTGGATCATCATTGGGAATTTAACAACAATTTTGGT-TTGTGGGTTAT 133
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 43 AGCTTGAAAAAGGTGGATCATCATTGGGAATTTAACAACAATTTT-GTGTTGTGGGTTAT 101
Query 134 CTTCACTTTTCTGGTTCTTGTGCTGAGCATTAATGGGTGATATGCAAGTTGGTGTTGCCA 193
||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||
Sbjct 102 CTTCACTTTTCTGGTTCTTGTACTGAACATTAATGGGGGATATGCAAGTTGGTGTTGCCA 161
Query 194 CTATTGACGATAAGGGTTTTTATGGTTTGATGGAGGATACA-CAAGTAAAGGCGGTGGCT 252
|||||||||||||||| |||||||| ||||||||||||| | | ||||| |||||||||
Sbjct 162 CTATTGACGATAAGGGATTTTATGGCTTGATGGAGGATA-ATCCGGTAAACGCGGTGGCT 220
Query 253 TCATCGAACCCGAGCTTGCAAGTGTCGGTTTCTTTTGGTAGGTTTGAGAATGATTCACTT 312
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 221 TCATCGAACCCGAGCCTGCAAGTGTCGGTTTCATTTGGTAGGTTTGAGAATGATTCACTT 280
Query 313 TCATGGGAGAAGTTCTCAGCTTTCTCTCCAAATAAGTACTTGGAGGAAGTTGGCAAGTGT 372
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 281 TCATGGGAGAAGTTCTCAGCTTTCTCTCCAAACAAGTACTTGGAGGAAGTTGGAAAGTGT 340
Query 373 GCTACTCCAGGATCAGTTGCTCAAAAGAAGGCTTATTTTGAAGCTCATTATAAGAAGATT 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 GCTACTCCAGGATCAGTTGCTCAAAAGAAGGCTTATTTTGAAGCTCATTATAAGAAGATT 400
Query 433 GCTGAGAGGAAAGCTGAGATTATAGATCAGGAGAAACTAATGGACGAGAACGCATCTTTT 492
|||||||||||||||||||| ||||||||||||||||||||||| | || |||||||||
Sbjct 401 GCTGAGAGGAAAGCTGAGATCATAGATCAGGAGAAACTAATGGATAAAAATGCATCTTTT 460
Query 493 AGATCTATTGTTTCAGATC-AGGAGAGTGTGGAATGCGAAAATGGCGGGGTGGTGGTAGA 551
||||||||||||||||||| ||| |||||||||| |||||||||| | | ||||||||||
Sbjct 461 AGATCTATTGTTTCAGATCAAGG-GAGTGTGGAACGCGAAAATGGTGAGTTGGTGGTAGA 519
Query 552 GTCTGAGGTTGATAATGGTTGTAATGGGCAA-TTATCTTGTGATGAAGATAAGCATGTGA 610
|||||||||||| |||| | |||||| || ||| ||||||||||||||||||| ||||
Sbjct 520 TTCTGAGGTTGATGATGGATCAAATGGGAAATTTA-CTTGTGATGAAGATAAGCAGGTGA 578
Query 611 CTGACATTACTGCTAAAGTGAATCAAGTGAGTATTGATGAGAGTAATGAAGAAACTATTG 670
|||||||| ||||| |||||||| || ||||| |||||||||||||||||||||| || |
Sbjct 579 CTGACATTGCTGCTGAAGTGAATGAACTGAGTTTTGATGAGAGTAATGAAGAAACAATCG 638
Query 671 TTGTCAAGGAATGTCAAAGCTCGGTTGATAC-GGTGAAAGACGAAGTCAAGGACAGTGTG 729
||||||||||||||||||||||||||||| | |||||||| ||||||||||||| ||||
Sbjct 639 TTGTCAAGGAATGTCAAAGCTCGGTTGAT-CAAGTGAAAGAAGAAGTCAAGGACAATGTG 697
Query 730 GATAGTCCAGTATTGGAGAAAGCAGAGGAGATTGCTCTTGAGGA-AGAGAAGAT-AGAAA 787
||||||||||| ||||||||| |||| ||||||||||||| ||| | |||| || ||||
Sbjct 698 GATAGTCCAGTGTTGGAGAAATCAGAAGAGATTGCTCTTGTGGATA-AGAA-ATCAGAAG 755
Query 788 TGGTCGTCCATGTGCAGgagagatcagaagaggttttacaagaggatgagaaagaagaga 847
||||||||||| ||||||| | || ||||||||||||||| |||||||||||||||||
Sbjct 756 TGGTCGTCCATACACAGGAGAAACCAAAAGAGGTTTTACAAGTGGATGAGAAAGAAGAGA 815
Query 848 cagaagtaagagaagaagtgagagaCGACATTTCATTACAAAATGATACTGTGGATGCAA 907
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct 816 CAGAAGTAAGAGAAGAAGTGAGAGACAACATTTCATTACAAAATGATACTGGGGATACAA 875
Query 908 ATGAAACGACGAA-GAAGGTGGTGAAGAAAGAGAAAAAGCCTAATCTAATCAAGAAGAAT 966
|||||||| | || ||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 876 ATGAAACG-CCAATGAAGGTGGTGAAGAAAGAGAAAAAGCCTAATATAATCAAGATTAAT 934
Query 967 GATGGAAATGTGCGGATTAATCCTACGAGAGGCTCTCTTAAGCCTAATCAGGTGGGGGGA 1026
||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |
Sbjct 935 GATGGAAATGTGCGGATTAATCCTACGAGAGGCTCTCCTAAGCCTAATCAGGT-GACGAA 993
Query 1027 -AAACCGGAAACTAACAAAACTGTAACGAGTAGGAAAACTCCACCGAGCAAGGAGATGAA 1085
||||||||||||||||| | ||| | |||||||||||||||||||||||||| |
Sbjct 994 GAAACCGGAAACTAACAAGATTGT----A--AGGAAAACTCCACCGAGCAAGGAGATCAG 1047
Query 1086 AAACATGATGAAAGCAACAAAGAAACCAGC-AGCACCAATGTCAAAATCCCCACAAGGGT 1144
|||||||||||| ||||||||||||||||| | ||||||| |||||| ||||||||||||
Sbjct 1048 AAACATGATGAAGGCAACAAAGAAACCAGCTA-CACCAATCTCAAAAGCCCCACAAGGGT 1106
Query 1145 TTGCAACTCCAAGAGTGTACAAGCCAGCTCCAAC-AAAAACTTCATTGTCTACATCTCAC 1203
|| || ||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1107 TTTCAGCTCCAAGAGTGTACAAGCCAGCTCC-ACAAAAAACTTCATTGTCTACATCTCAC 1165
Query 1204 TCTTCGTTGAAGAAGGAAAAGGTCTCGCCTTTACTGAGTAAAAAACAAACCGCTCCAAAG 1263
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 TCTTCGATGAAGAAGGAAAAGGTCTCGCCTTTACTGAGTAAAAAACAAACCGCTCCAAAG 1225
Query 1264 TCATTGCATATCTCTATGAATCTGGATCCACCTGCTTCCGATCCTACTGCTCTTCCAAGC 1323
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1226 TCATTGCATATCTCTATGAATCTGGATCCACCTGCTTCCGATCCTACTGCTCTTACAAGC 1285
Query 1324 ACTAGAAAATCATTGATCATGGAGCGAATGGGAGATAAAGACATTGTCAAACGTGCATTC 1383
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 ACTAGAAAATCATTGATTATGGAGCGAATGGGAGATAAAGACATTGTCAAACGTGCATTT 1345
Query 1384 AAATCATTTCAAAAGAGTTTCGACTTCAAGTCTTCTGTCGACGGGCTAAACACAGCAGTA 1443
||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct 1346 AAATCATTTCAAAAGAGTTTCGACTTCAAGTCTTCTGACGATGGGATAAACACAGCAGTA 1405
Query 1444 AAGCAGAATCCTGCAAAGCCAACAATTATTCCGTCAGTAGCTACTCGTCAGAAGGAAAAT 1503
||||||||||||||||||||||| | |||||| |||||||||||||| ||||||||||||
Sbjct 1406 AAGCAGAATCCTGCAAAGCCAACTAGTATTCCATCAGTAGCTACTCGGCAGAAGGAAAAT 1465
Query 1504 GGCAGGCCTACAAAAGCAAGTAGCATGGAGAAGAGAAGTGGTACTACCGCCTATCGTTCT 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 GGCAGGCCTACAAAAGCAAGTAGCATGGAGAAGAGAAGTGGTACTACCGCCTATCGTTCT 1525
Query 1564 CCATCTCATGGACTCAAAAGCAATGAAACCGCTGAGAAACAACAA-AAGGAGATTTCCAA 1622
|||||||||||||||||||||||||| ||| ||||||||||| || |||||| |||||||
Sbjct 1526 CCATCTCATGGACTCAAAAGCAATGAGACCACTGAGAAACAA-AAGAAGGAGCTTTCCAA 1584
Query 1623 GTCTGGTGCAAGACCTTTAGAGAAGACACGCTTGCAGAAGAACCCAAAGGCAGG---AGT 1679
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1585 GTCTGGTGCAAGACCTGTAGAGAAGACAGGCTTGCAGAAGAACCCAAAGGCAGGCGGAGT 1644
Query 1680 GATTGATGCCAAAACGCGGAGGGACTCTCTTAATCCGAAAGCAAAACCTGTGCAGGGTTC 1739
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 GATTGATGCCAAAACCCGGAGGGACTCTCTTAATCCGAAAGCAAAACCTGTGCAGGGTTC 1704
Query 1740 TCTTCCAATGCGGACCGTATCGAAAAGCTCTTTAGACAAAGTGTTATGATAGTTATATCC 1799
|||||||||||||||| || |||||||| |||||||||| |||||||||||||||||||
Sbjct 1705 TCTTCCAATGCGGACCTTACCGAAAAGCACTTTAGACAAGGTGTTATGATAGTTATATCG 1764
Query 1800 ATCCGGTATTAAT-CTGATCTTCTGGCAAAGATCGCCACCAATGTTGTTCCATCAGTCTT 1858
||||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1765 ATCCGGTTTTTATTCTGATATTCTGGCAAAGATCGCCACCAATGTTGTTTCATCAGTCTT 1824
Query 1859 GGGGTATAGAGCCAATGATCTTGTATTCTTGTTGTTATATAGAAAAGTCTCTAGTTACCA 1918
| |||| ||||||||||||||||| | ||| |||||||||||||||||||| |||
Sbjct 1825 GAGGTAAAGAGCCAATGATCTTGT-T----GTT---ATATAGAAAAGTCTCTAGTTGCCA 1876
Query 1919 GTATTTAGTCGTGGAAGGAGTAATAAGAGTAATAAGAGATAGTTATATTTTACAGTTTCC 1978
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1877 GTATTTAGTTGTGGAAGGAGTAATAAGAGTAAGAAGAGATAGTTATATTTTACAGTTTCC 1936
Query 1979 TATGTATGTGTATAGAACCCAATGATAATGTTGTTCTGATAATAGAAGTGGATTGATTC 2037
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1937 TATGTATGTGTATAGAACCCAATGATTATGTTGTTCTGATAATAGAAGTGGATTGATTC 1995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76599482695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5