BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24180.1
Length=1547
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921480 jgi|Araly1|921480|scaffold_102761.1 2102 0.0
Ahg475318 jgi|Araly1|475318|fgenesh2_kg.2__448__AT1G59900.1 795 0.0
Ahg926315 jgi|Araly1|926315|scaffold_201876.1 198 9e-50
> Ahg921480 jgi|Araly1|921480|scaffold_102761.1
Length=1232
Score = 2102 bits (1138), Expect = 0.0
Identities = 1203/1234 (97%), Gaps = 5/1234 (0%)
Strand=Plus/Plus
Query 86 TCTAAAAGCAAATCGGAGAG-CTTCGGCGATGGCGTTATCACGACTTTCTTCACGATCCA 144
||| |||||||||||||||| || |||||||||||||||||||||||||||| |||||||
Sbjct 1 TCTTAAAGCAAATCGGAGAGACTCCGGCGATGGCGTTATCACGACTTTCTTCGCGATCCA 60
Query 145 ACACTTTCCTAAAGCCGGCGATTACCGCCTTGCCCTCCTCCATCCGCCGTCATGTTTCCA 204
|||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 61 ACACTTTCTTAAAGCCGGCGATCACCGCTTTGCCCTCCTCCATCCGCCGTCATGTTTCCA 120
Query 205 CAGACTCATCACCGATCACAATCGAAACCGCCGTCCCTTTCACATCGCATCTATGTGAAT 264
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 CAGATTCATCACCGATCACAATCGAAACCGCCGTCCCTTTCGCATCGCATCTATGTGAAT 180
Query 265 CACCGTCACGCTCCGTCGAGACTTCATCGGAGGAGATCTTAGCCTTTTTCCGTGACATGG 324
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 CGCCGTCACGCTCCGTCGAGACTTCATCGGAGGAGATCTTAGCGTTTTTCCGTGACATGG 240
Query 325 CTCGGATGAGGAGGATGGAGATCGCAGCAGATTCTCTTTACAAGGCGAAGCTGATCCGTG 384
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 241 CTCGGATGAGGAGGATGGAGATCGCAGCAGATTCTCTCTACAAGGCTAAGCTGATCCGTG 300
Query 385 GGTTCTGTCATTTGTACGATGGTCAAGAGGCTTTAGCGGTGGGAATGGAAGCGGCGATTA 444
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATTCTGCCATTTGTACGATGGTCAAGAGGCTTTAGCGGTGGGAATGGAAGCGGCGATTA 360
Query 445 CCAAAAAAGATGCGATTATCACATCGTATCGTGATCACTGTACTTTCATTGGTCGTGGTG 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCAAAAAAGATGCGATTATCACATCGTATCGTGATCACTGTACTTTCATTGGTCGTGGTG 420
Query 505 GGAAGCTTGTTGATGCTTTCTCTGAGCTTATGGGGAGAAAAACTGGTTGTTCTCATGGTA 564
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 421 GGAAGCTTGTTGATGCTTTCTCTGAGCTTATGGGAAGAAAAACTGGTTGTTCTCATGGTA 480
Query 565 AAGGAGGATCTATGCATTTCTATAAGAAAGATGCTTCCTTTTATGGTGGACATGGGATTG 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAGGAGGATCTATGCATTTCTATAAGAAAGATGCTTCCTTTTATGGTGGACATGGGATTG 540
Query 625 TTGGTGCTCAGATTCCATTGGGATGTGGTTTGGCTTTTGCTCAGAAGTATAATAAGGATG 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTGGTGCTCAGATTCCATTGGGATGTGGTTTGGCTTTTGCTCAGAAGTATAATAAGGATG 600
Query 685 AGGCTGTGACTTTTGCTTTGTATGGTGATGGTGCTGCGAATCAGGGACAGTTGTTTGAGG 744
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 601 AGGCTGTGACTTTTGCCTTGTATGGTGATGGTGCTGCGAATCAAGGACAGTTGTTTGAGG 660
Query 745 CCTTGAACATTTCGGCTTTGTGGGATTTGCCTGCGATTCTTGTTTGCGAGAATAACCATT 804
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCTTGAATATTTCGGCTTTATGGGATTTGCCTGCGATTCTTGTTTGCGAGAATAACCATT 720
Query 805 ATGGAATGGGAACGGCTACATGGAGGTCGGCTAAGTCTCCGGCTTATTTCAAGCGTGGAG 864
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 721 ATGGAATGGGAACGGCTACATGGAGATCGGCTAAGTCTCCGGCTTATTTCAAGCGTGGAG 780
Query 865 ATTATGTTCCTGGCTTGAAGGTGGATGGTATGGATGCACTGGCTGTGAAACAGGCGTGCA 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATTATGTTCCTGGCTTGAAGGTGGATGGTATGGATGCACTGGCTGTGAAACAGGCGTGCA 840
Query 925 AGTTTGCCAAGGAGCATGCTCTCAAGAATGGTCCTATTATCCTTGAGATGGACACTTACA 984
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 841 AGTTTGCCAAGGAGCATGCTCTCAAGAATGGACCTATTATACTTGAGATGGACACTTACA 900
Query 985 GATACCACGGTCACTCTATGTCTGACCCAGGAAGCACTTACCGTACTCGTGATGAAATCT 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GATACCACGGTCACTCTATGTCTGACCCAGGAAGCACTTACCGTACTCGTGATGAAATCT 960
Query 1045 CTGGCGTGAGACAGGTGCGTGATCCAATTGAAAGGGTGCGAAAGTTGCTCTTAACTCATG 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTGGCGTGAGACAGGTGCGTGATCCAATTGAAAGGGTGCGAAAGTTGCTCTTAACTCATG 1020
Query 1105 ACATAGCTACCGAAAAAGAGCTTAAGGACATGGAGAAAGAGATAAGGAAAGAAGTAGATG 1164
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACATAGCTACAGAAAAAGAGCTTAAGGACATGGAGAAAGAGATAAGGAAAGAAGTAGATG 1080
Query 1165 ACGCCGTAGCTCAGGCCAAGGAGAGCCC-GATACCAGATGCATCTGAGCTATTCACAAAC 1223
|||| ||||||||||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1081 ACGCTGTAGCTCAGGCTAAGGAGAGCCCTG-TACCAGATGCATCTGAGCTATTCACAAAC 1139
Query 1224 ATGTACGTGAAAGACTGCGGAGTTGAGTCGTTTGGAGCAGACAGAAAAGAACTCAAAGTA 1283
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1140 ATGTACGTGAAAGACTGCGGAGTTGAGTCATTTGGAGCAGACAGAAAAGAACTCAAAGTA 1199
Query 1284 ACACTTCCATAGAATC-TTGCTTCCCAAGGAGAT 1316
||||||||||| |||| |||||||||||||||||
Sbjct 1200 ACACTTCCATA-AATCATTGCTTCCCAAGGAGAT 1232
> Ahg475318 jgi|Araly1|475318|fgenesh2_kg.2__448__AT1G59900.1
Length=1434
Score = 795 bits (430), Expect = 0.0
Identities = 881/1093 (81%), Gaps = 54/1093 (5%)
Strand=Plus/Plus
Query 216 CCGATCACAATCGAAACCGCCG-TCCCTTTCACATCGCATC-TATGTGAAT-CACCGTCA 272
|||||||||||||| | | || | ||||||||| | || | |||||| || ||||||||
Sbjct 139 CCGATCACAATCGAGA-CTTCGCTTCCTTTCACAGCTCA-CTTATGTG-ATCCACCGTCA 195
Query 273 CGCTCCGTCGAGACTTCATCGGAG--GAGATCTTAGC-CTTT-TTCCGTGA-CATGGC-T 326
||||||||||| | ||||| ||| ||| ||| | ||| ||||| | |||||| |
Sbjct 196 CGCTCCGTCGA-A--TCATC-GAGTCAAGAGCTTCTCGATTTCTTCCG-AACCATGGCGT 250
Query 327 CGGATGAGGA-GGATGGAGATCGCAGCAGATTCTCTTTACAAGGCGAAGCTGATCCGTGG 385
|||| || | ||||| |||||||| ||||| |||||||| |||||||| ||||| ||
Sbjct 251 -TGATG-CGACGTATGGAAATCGCAGCCGATTCGCTTTACAAAGCGAAGCTAATCCGAGG 308
Query 386 GTTCTGTCATTTGTACGATGGTCAAGAGGCTTTAGCGGTGGGAATGGAAGCGGCGATTAC 445
||| || ||| | ||||| || ||||| ||| |||| | || |||||||| |||||||
Sbjct 309 GTTTTGCCATCTCTACGACGGCCAAGAAGCTGTAGCTATAGGCATGGAAGCTGCGATTA- 367
Query 446 CAAA-AAAGATGCGATTATCACAT-CGTATCGTGATCACTGTACTTTCATT-GGTCGTGG 502
|||| ||||| ||||| || || | | ||||| |||||||||| |||| || ||||||||
Sbjct 368 CAAAGAAAGACGCGATCATTAC-TGCTTATCGAGATCACTGTATTTTC-TTAGGTCGTGG 425
Query 503 TGGGAAGCTTGTTGATG-CTTTCTCTGAGCTTATGGGGAGAAAAACTGGTTGTTCTCATG 561
||| |||| ||| | |||||| ||||||||||| ||| || ||||||||||| | |
Sbjct 426 TGGTTCGCTTCATGA-GATTTTCTCAGAGCTTATGGGAAGACAAGCTGGTTGTTCTAAAG 484
Query 562 GTAAAGGAGGATCTATGCATTTCTATAAGAAAG-ATGCTTCCTTTTATGGTGGACATGGG 620
| ||||| ||||||||||||||||||||||| | || | || ||||||||||| ||||||
Sbjct 485 GGAAAGGTGGATCTATGCATTTCTATAAGAAGGAAT-CGTCGTTTTATGGTGGTCATGGG 543
Query 621 ATTGTTGGTGCTCAGATTCCATTGGGATGTGGT-TTGGCTTTTGCTCAGAAGTATAATAA 679
||||||||||||||| ||||||| || |||||| || |||||||||||||||||||||||
Sbjct 544 ATTGTTGGTGCTCAGGTTCCATTAGGTTGTGGTATT-GCTTTTGCTCAGAAGTATAATAA 602
Query 680 GGATGAGGCTGTGACTTTTGCTTTGTATGGTGATGGTGCTGCGAATCAGGGACAGTTGTT 739
||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 603 GGAAGAGGCTGTGACATTTGCTTTGTATGGTGATGGTGCTGCGAATCAAGGACAGTTGTT 662
Query 740 TGAGGCCTTGAACATTTCGGCT-TTGTGGGATTTGCCTGCGATTCTTGTT-TGCGAGAAT 797
||| || ||||| || || ||| || |||||||| ||||| ||| ||| | ||||||||
Sbjct 663 TGAAGCTTTGAATATATCTGCTCTT-TGGGATTTACCTGCTATT-TTGGTCTGCGAGAAC 720
Query 798 AACCATTATGGAATGGGAACGGCT-ACATGGAG-GTCGGCTAAGTCTCCGGCTTATTTCA 855
|| || |||||||||||||| ||| | |||||| | | ||||| | | |||| | ||
Sbjct 721 AATCACTATGGAATGGGAACTGCTGA-ATGGAGAGCCT-CTAAGAGTTCATCTTACTACA 778
Query 856 AGCGTGGAGATTATGTTCCTGG-CTTGAAGGTGGATGGTATGGATGCACTGGCTGTGAAA 914
||||||| |||||||||||||| || ||||| ||||||||||||||| | ||||| |||
Sbjct 779 AGCGTGGTGATTATGTTCCTGGACTC-AAGGTAGATGGTATGGATGCATTTGCTGTCAAA 837
Query 915 CAGGCGTGCAAGTTTGCCAAGGAGCATGC-TCTCAAGAATGGTCCTATTATCCTTGAGAT 973
|| || ||||| ||||| ||| ||||||| | | |||| || || || || ||||||||
Sbjct 838 CAAGCTTGCAAATTTGCTAAGCAGCATGCGT-TGGAGAAGGGACCAATAATTCTTGAGAT 896
Query 974 GGACACTTACAGATACCACGGTCACTCTATGTCTGACCCAGGAAGCACTTACCGTACTCG 1033
|||||| ||||| |||||||||||||| |||||||| || || ||||| |||||||| ||
Sbjct 897 GGACACATACAGGTACCACGGTCACTCCATGTCTGATCCTGGGAGCACATACCGTACACG 956
Query 1034 TGATGAAATCTCTGGCGTGAGACAGGTGCGTGATCCAATTGAAAGGGTGCGAAAGTTGCT 1093
||||| || ||||| ||||| |||| || ||||||||||| || | ||||||| |
Sbjct 957 AGATGAGATATCTGGTGTGAGGCAGGAACGGGATCCAATTGAGAGAATAAAAAAGTTGGT 1016
Query 1094 -CTTAACTCATGACATAGCTACCGAAAAAGAGCTTAAGGACATGGAGAAAGAGATAAGGA 1152
|| | |||||||| |||| ||||| |||||||||||||| |||||||| || || || |
Sbjct 1017 ACT-ATCTCATGACCTAGCAACCGAGAAAGAGCTTAAGGATATGGAGAAGGAAATTAGAA 1075
Query 1153 AAGAAGTAGATGACGCCGTAGCTCAG-GCCAAGGAGAGCCCGATACCAGATGCAT-CTGA 1210
||||||||||||||||| | || || || ||||| |||| || ||||| || | ||||
Sbjct 1076 AAGAAGTAGATGACGCCATTGC-CAAAGCTAAGGATTGCCCAATGCCAGA-GCCTTCTGA 1133
Query 1211 GCTATTCACAAACATGTACGTGAAAG-ACTGCGG-AGTTGAGTCGTTTGGAGCAGACAGA 1268
||| || || || |||| ||||||| | | || | ||||| |||||| | ||||||
Sbjct 1134 GCTTTTTACCAATGTGTATGTGAAAGGA-TATGGCACC-GAGTCATTTGGACCTGACAGA 1191
Query 1269 AAAGAACTCAAAG 1281
|||||| ||||||
Sbjct 1192 AAAGAAGTCAAAG 1204
> Ahg926315 jgi|Araly1|926315|scaffold_201876.1
Length=438
Score = 198 bits (107), Expect = 9e-50
Identities = 151/172 (88%), Gaps = 4/172 (2%)
Strand=Plus/Plus
Query 963 ATCCTTGAGATGGACACTTACAGATACCACGGTCACTCTATGTCTGACCCAGGAAGCACT 1022
|||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 132 ATCCTTGAGATGGACACTTATAGGTACCACGGTCACTCAATGTCTGACCCAGGAAGCACT 191
Query 1023 TACCGTAC-TCGTGATGAAATCTCTGGCGTGAGACAGGTGCGTGATCC-AATTGAAAGGG 1080
|||||||| | ||||||| ||||| |||||||| |||||||| ||||| || || || |
Sbjct 192 TACCGTACAT-GTGATGAGATCTCAGGCGTGAGGCAGGTGCGAGATCCCAAA-GATAGAG 249
Query 1081 TGCGAAAGTTGCTCTTAACTCATGACATAGCTACCGAAAAAGAGCTTAAGGA 1132
|| |||||||| || || |||||||||||||||| || |||||||| |||||
Sbjct 250 TGAGAAAGTTGATCATATCTCATGACATAGCTACTGAGAAAGAGCTCAAGGA 301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57935262645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5