BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24200.1
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472680 jgi|Araly1|472680|fgenesh2_kg.1__2634__AT1G24190.1 442 1e-123
Ahg912284 jgi|Araly1|912284|Al_scaffold_0001_2538 361 4e-99
Ahg912174 jgi|Araly1|912174|Al_scaffold_0001_2428 289 2e-77
> Ahg472680 jgi|Araly1|472680|fgenesh2_kg.1__2634__AT1G24190.1
Length=4277
Score = 442 bits (239), Expect = 1e-123
Identities = 421/505 (83%), Gaps = 27/505 (5%)
Strand=Plus/Plus
Query 1 ATGGTTGGAGAAGGAGGCGCACACAAGCCT-ACTACAAATGACGCGCTTAAATACCTTAG 59
|||||||||| |||| | || || ||| || |||||||||||||||||| ||||||||
Sbjct 39 ATGGTTGGAGGAGGAAGTGCTCAGAAG-CTAACTACAAATGACGCGCTTGCATACCTTAA 97
Query 60 AGCCGTGAAGGCTAAATTTCAAGG-TCAACGTGAAAAATATGACGAGTTTCTTCAGATCA 118
||||||||||| |||||||| ||| ||||||||||||||| |||||||||||| || |||
Sbjct 98 AGCCGTGAAGGATAAATTTC-AGGATCAACGTGAAAAATACGACGAGTTTCTTGAGGTCA 156
Query 119 TGATAG-ATTATAAAACTCAGAGAATTGATATATCTGGTGTTATAATAAGGA-TGAAAGA 176
||| || ||| ||| |||| || |||||| | ||||||| |||| || || | |||||
Sbjct 157 TGA-AGAATTTTAAGTCTCATCGAGTTGATACAGCTGGTGTGATAACAA-GAGTAAAAGA 214
Query 177 ACTCTTGAAAGAACAACAAGGA-TTACTTTTGGGTTTCAATGCCTTCTTACCAAATGGTT 235
||| || |||| || ||| || ||| | |||||||||||| ||||||| ||||| ||||
Sbjct 215 ACTTTTCAAAGGGCACCAA-GAGTTAATATTGGGTTTCAATACCTTCTTGCCAAAGGGTT 273
Query 236 AT-ATGATCACA---C-A--T---CATGAACAACCTTCAC-AGAAGAAAC-CTGTCGAGT 283
| | ||||||| | | | ||| ||||||| ||| | ||||||| | || ||||
Sbjct 274 TTGA-GATCACACTCCAACCTGAAGATGGACAACCTCCACTA-AAGAAACGC-GTTGAGT 330
Query 284 TAGGGGAAGCAATTAGTTTTATTAACAAGATTAAGACAAGGTTTCAGGGCGATGATCGTG 343
| | |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 331 TTGAGGAAGCAATTAGTTTTGTTAACAAGATTAAGACAAGGTTTCAGGGCGACGATCGTG 390
Query 344 TATACAAATCAGTTTTAGACATTTTAAACATGTACAGAAAGGATAGGAAGCCCATCACCG 403
||||||||||| |||||||||||||||||||||||||||||||||| ||| |||| || |
Sbjct 391 TATACAAATCATTTTTAGACATTTTAAACATGTACAGAAAGGATAGCAAGTCCATAACTG 450
Query 404 CGGTCTACCGGGAGGTTGCCATCCTATTTCTAGATCATAACA-ATTTGCTTGTGGAGTTT 462
||||||| |||||||||| ||||||||| ||||||| | |||||||||| ||||||
Sbjct 451 AAGTCTACCAGGAGGTTGCCGTCCTATTTCGGGATCATA-CGGATTTGCTTGTAGAGTTT 509
Query 463 ACTCACTTTCTGCCTGCTACTCCAG 487
|||||||||||||||| |||| |||
Sbjct 510 ACTCACTTTCTGCCTGATACTTCAG 534
> Ahg912284 jgi|Araly1|912284|Al_scaffold_0001_2538
Length=540
Score = 361 bits (195), Expect = 4e-99
Identities = 413/511 (81%), Gaps = 44/511 (9%)
Strand=Plus/Plus
Query 1 ATGGTTGGAGAAGGAGGCGCACACAAGCCTACTACAAATGACGCGCTTAAATACCTTAGA 60
||||||||||| ||||| |||||||||||||||||||||| |||| || ||||||||| |
Sbjct 1 ATGGTTGGAGATGGAGGTGCACACAAGCCTACTACAAATGTCGCGTTTGAATACCTTAAA 60
Query 61 GCCGTGAAGGCTAAATTTCAAGG-TCAACGTGAAAAATATGACGAGTTTCTTCAGATCAT 119
||||||||||||||||||| ||| ||||| ||||||||||||||| |||||| ||||| |
Sbjct 61 GCCGTGAAGGCTAAATTTC-AGGATCAACATGAAAAATATGACGAATTTCTTGAGATCTT 119
Query 120 G-ATAGATTATAAAACTCAGAGAATTGATATATC-TGGTGTTATAATAAGGATGAAAGAA 177
| || |||| |||| || |||| |||||| | | || ||| ||||||||||||||||||
Sbjct 120 GAAT-GATTTTAAATGTCGGAGAGTTGATAGA-CTTGATGTCATAATAAGGATGAAAGAA 177
Query 178 CTCTTGAAAGAACAACAAGGA-TTACTTTTGGGTTTCAATGCCTTCTTACCAAATGGTTA 236
||||||||||| || ||| || |||||||||||||||||| ||||||| ||||| ||||
Sbjct 178 CTCTTGAAAGAGCA-CAAAGAGTTACTTTTGGGTTTCAATACCTTCTTGCCAAAGGGTTT 236
Query 237 TATGATCACAC----A-----T---CATGAACAACCTTCACAGAAGAAACCTGTCGAGTT 284
|| |||||||| | | ||||||||||||||||| ||| |||| ||| ||
Sbjct 237 TAGGATCACACTCCTACCCGATGATCATGAACAACCTTCACATAAGGAACC---CGATTT 293
Query 285 -AGGGGAAGCAATTAGTTTTATTAACAA-GATTAAGACAAGGTTTCAGGGCGATGATCGT 342
| || | || ||| |||||||| ||| | || |||| |||||||| |||| | ||||
Sbjct 294 TAAGG-ATGCTCTTACTTTTATTA-CAAAGGTTCAGACGAGGTTTCAAGGCG--G-TCGT 348
Query 343 GTATACAAATCAGTTTTAGACATTTTAAACATGTACAGAAAGGATAGGAA------G-CC 395
| |||||||||| ||||||||||||||| ||| |||||||| || || || | ||
Sbjct 349 GCATACAAATCATTTTTAGACATTTTAAGCATCTACAGAAATGAGAGAAATTTAAAGTCC 408
Query 396 CATCACCGC-GGTCTACCGG-GAGGTTGCCATCCTATTTCTAGATCATAACA-ATTTGCT 452
| ||||| | ||||||| | |||||| ||||| |||||| ||||||| | |||||||
Sbjct 409 C-TCACC-CAGGTCTAC-GATGAGGTTTCCATCTTATTTCGGGATCATA-CGGATTTGCT 464
Query 453 TGTGGAGTTTACTCACTTTCTGCCTGCTACT 483
|| |||||||| || |||||||||||| |||
Sbjct 465 TGCGGAGTTTAATCGCTTTCTGCCTGCAACT 495
> Ahg912174 jgi|Araly1|912174|Al_scaffold_0001_2428
Length=1671
Score = 289 bits (156), Expect = 2e-77
Identities = 211/238 (89%), Gaps = 2/238 (1%)
Strand=Plus/Plus
Query 251 ATGAACAACCTTCAC-AGAAGAAACCTGTCGAGTTAGGGGAAGCAATTAGTTTTATTAAC 309
||| ||||||| ||| | ||||||| ||| ||||| | |||||| ||||||||| |||||
Sbjct 218 ATGGACAACCTCCACTA-AAGAAACGTGTTGAGTTCGAGGAAGCTATTAGTTTTGTTAAC 276
Query 310 AAGATTAAGACAAGGTTTCAGGGCGATGATCGTGTATACAAATCAGTTTTAGACATTTTA 369
|||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 277 AAGACTAAGACAAGGTTTCAGGGCGATGATCGTGTATACATATCATTTTTAGACATTTTA 336
Query 370 AACATGTACAGAAAGGATAGGAAGCCCATCACCGCGGTCTACCGGGAGGTTGCCATCCTA 429
||||||||||||| ||||| ||| ||||||| | |||||||| |||||||||||||||
Sbjct 337 GACATGTACAGAAATGATAGCAAGTCCATCACTGAGGTCTACCAGGAGGTTGCCATCCTT 396
Query 430 TTTCTAGATCATAACAATTTGCTTGTGGAGTTTACTCACTTTCTGCCTGCTACTCCAG 487
|||| |||||||||| ||||||||||||| |||||||||||||| |||| |||| |||
Sbjct 397 TTTCGAGATCATAACGATTTGCTTGTGGAATTTACTCACTTTCTACCTGATACTTCAG 454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21634218963
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5