BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G24210.1

Length=801
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg313265 jgi|Araly1|313265|fgenesh1_pm.C_scaffold_1002045           281    4e-75
  Ahg921344 jgi|Araly1|921344|scaffold_102625.1                        228    6e-59


> Ahg313265 jgi|Araly1|313265|fgenesh1_pm.C_scaffold_1002045
Length=525

 Score =  281 bits (152),  Expect = 4e-75
 Identities = 189/207 (91%), Gaps = 2/207 (1%)
 Strand=Plus/Plus

Query  375  AGACACGGTTTCAGAGCCTTGATACTCATGTAGTGGGGGCAATTCGCGGGTTAATGAAGA  434
            ||||| |||||||||| |||||||||||||||||||||||  |||  ||| |||||||||
Sbjct  320  AGACAAGGTTTCAGAGACTTGATACTCATGTAGTGGGGGCGTTTCAAGGGATAATGAAGA  379

Query  435  TGTTTAAAGAGGGAAAGATGTCGGTAAAGGAGGTGCAAGAGGAGGTCATTGATGTTCTCT  494
            ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct  380  TGTTTAAAGAGGGAAAGATGTCGGTAAAGGAGGTGCACGAGGCGGTCATTGATGTTCTCT  439

Query  495  TCTATCATGAAGATTTGATTGAAG-ACTTTCTCAGATTTTTCACAAAGAACCCTGTATCA  553
            |||||||||||||||||||  ||| ||||||||| |||||| | |||||| |||||| ||
Sbjct  440  TCTATCATGAAGATTTGATC-AAGGACTTTCTCAAATTTTTAAAAAAGAAACCTGTAGCA  498

Query  554  ACAGCATCACTACTACTACAATTATAA  580
             ||||||||||||||||||||||||||
Sbjct  499  TCAGCATCACTACTACTACAATTATAA  525


> Ahg921344 jgi|Araly1|921344|scaffold_102625.1
Length=532

 Score =  228 bits (123),  Expect = 6e-59
 Identities = 213/253 (84%), Gaps = 19/253 (8%)
 Strand=Plus/Plus

Query  352  AGAGGATTTTATAAACAAGCTCAAGACACGGTTTCAG-AGC-CTTGATACTCATGTAGTG  409
            |||||||||||| |||||||| |||||| ||| || | | | ||||||||||||||||||
Sbjct  281  AGAGGATTTTATGAACAAGCTTAAGACAAGGTCTC-GTA-CTCTTGATACTCATGTAGTG  338

Query  410  GGGGCAATTCGCGGGTTAATGAAGA-TGTTTAAAGAGGGAAAGATGTCGGTAAAGGAGGT  468
            ||| || ||   | | |||||| || |||||||||||||||||||||||||||| |||||
Sbjct  339  GGGTCATTTAAAGCGATAATGA-GAATGTTTAAAGAGGGAAAGATGTCGGTAAAAGAGGT  397

Query  469  GCA-AGAGGAGGTCATTGATGTTCTCT-TCTATCATGAAGATTTGATTGAA-GACTTTCT  525
            ||| | ||||||||| |||| |||||| | |||||||||||||||||  || ||||||||
Sbjct  398  GCACA-AGGAGGTCACTGATATTCTCTAT-TATCATGAAGATTTGATC-AACGACTTTCT  454

Query  526  CAGATTTTTC-ACAAAGAAC---CCTGTATCAACAGCATCACTACTACTACAATTATAAC  581
            |||||||||| | ||||||    ||| || || ||||||||||||||||| |||| ||||
Sbjct  455  CAGATTTTTCGA-AAAGAATGATCCTATAGCATCAGCATCACTACTACTAGAATTGTAAC  513

Query  582  GAGTGATGTATTT  594
            |||  ||||||||
Sbjct  514  GAG--ATGTATTT  524



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29583383592


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5