BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24220.1
Length=2235
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912289 jgi|Araly1|912289|Al_scaffold_0001_2543 442 5e-123
Ahg335662 jgi|Araly1|335662|fgenesh1_pg.C_scaffold_1002227 174 2e-42
Ahg930704 jgi|Araly1|930704|scaffold_303161.1 65.8 1e-09
Ahg930697 jgi|Araly1|930697|scaffold_303154.1 65.8 1e-09
> Ahg912289 jgi|Araly1|912289|Al_scaffold_0001_2543
Length=2433
Score = 442 bits (239), Expect = 5e-123
Identities = 405/480 (84%), Gaps = 31/480 (6%)
Strand=Plus/Plus
Query 441 AACCATCCCTCCTGATGCGAACAAAGAGTTAAGGAAATCTCGAACCATGTTTGGAAAAAG 500
|||||| |||||||| |||||||||| |||||| ||| || ||||||| ||||||||||
Sbjct 1137 AACCATTCCTCCTGAGGCGAACAAAGGGTTAAGCCAATTTCAAACCATGGTTGGAAAAAG 1196
Query 501 TGTACCACTAGAGAAAACTCTCGATGATGCACGTTCATACATAGATTCTGTGAAGGAAGC 560
|||||||| | |||||||| || |||||||| |||||||||| | || |||||||||||
Sbjct 1197 TGTACCACCAAAGAAAACTATCAATGATGCATGTTCATACATCTACTCCGTGAAGGAAGC 1256
Query 561 ATTTCATGATGAGCCTGCAAAATATGCCGAGTTTCTCAAGCTCTTGAATGATTATAAAGC 620
|||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| |||
Sbjct 1257 ATTTCATGATGAACCTGCAAAATATGCCGAGTTTCTCAAGCTCTTGGATGCTTATAGAGC 1316
Query 621 TCGTAGACTCGATGCCGATAGTGTCATTGCAAGAGT-GGACGAACTCACGAAAGATCACC 679
|||||| ||||| || |||||||||||||| || ||| |||||||||||||||||||
Sbjct 1317 CCGTAGAGTCGATAAAGACAGTGTCATTGCAAG-GTTGGAGGAACTCACGAAAGATCACC 1375
Query 680 GGAATCTGCTTCTTGGTTTAAGGGCCATCCTCCTGCCTGCGGCTA-AATCAACAATTCCT 738
|| ||||||||||||||||||| ||| | ||||||||||||||| || ||||| ||||
Sbjct 1376 GGGATCTGCTTCTTGGTTTAAGTGCC-T--TCCTGCCTGCGGCTACAAA-AACAAATCCT 1431
Query 739 CACAAGGCTAAGG-G-TAA--A---------AG---AACCG--CC-CG--TCCCGAGGCT 777
||||||||| | | | ||| | || ||| | || | |||| |||||
Sbjct 1432 CACAAGGCTGATGAGCTAACCAGCCTTCCTGAGGCTAACAGAGCCACCCCTCCCAAGGCT 1491
Query 778 AGCAGAACCATCCCTGTGAAGCTTAAGATAACCATTATTCCACCAAAGGCTAGAAGAACC 837
||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1492 AGCAGAACCATCCCTCTGAAGTTTAAGATAACCATT---CCACCAAAGGCTAGAAGAACC 1548
Query 838 ATCCCTTCCGAGGCTGACAAACCTACACACACTGATGAATTGAACTTTATGAACAAGCTT 897
|||||||| |||||||| |||||||||||| ||||||||||||| ||||| |||||||||
Sbjct 1549 ATCCCTTCTGAGGCTGAGAAACCTACACACTCTGATGAATTGAATTTTATAAACAAGCTT 1608
Score = 381 bits (206), Expect = 1e-104
Identities = 380/461 (82%), Gaps = 24/461 (5%)
Strand=Plus/Plus
Query 1 ATGGTTGGAAGAAGTGTATCACAGGAGCCTACTATGGCTGATGCTGTTTCATACATTGAA 60
||| ||| |||||| ||||||| ||| |||||||||| |||||| ||||||| ||||||
Sbjct 649 ATGATTGAAAGAAGAGTATCACCGGAACCTACTATGGATGATGCAGTTTCATTCATTGAT 708
Query 61 TCTGTGAAGGAAGAATTTCATGATGAACCTGCAAAATTTGACGAGTTTAGAATGCGCT-- 118
||||||||||||| |||||| |||||||||||||||||| ||||||||| || |||||
Sbjct 709 TCTGTGAAGGAAGCATTTCACGATGAACCTGCAAAATTTCACGAGTTTA-AA-GCGCTCC 766
Query 119 TGAATGAAGTTCGTGATGATAGAGTTGAGAAAGATAG-GATCACTGCAAGAATCAACGAA 177
||||||| ||||| ||| |||||||||| || | ||| | ||| ||||||||| || |||
Sbjct 767 TGAATGATGTTCGAGATCATAGAGTTGATAACGCTAGTG-TCATTGCAAGAATGAATGAA 825
Query 178 CTTATTAGTGGGAACCCCAAGCTGCATCTTGGTTCAAAAGTCTTCTTTCCCGAGGCTGAG 237
|| ||||| ||| |||| ||||||| || |||||||| ||||||||| ||||||||||||
Sbjct 826 CTCATTAGAGGGTACCCGAAGCTGCTTCGTGGTTCAAGAGTCTTCTTGCCCGAGGCTGAG 885
Query 238 ATAACCATCCCTCCCAAGGTTGAGCAACGCCATGAGTCTGTTGATGC-CAAAAAGAAACG 296
||||||||||||||||||| ||||||||||| |||||||| || || ||||| |||| |
Sbjct 886 ATAACCATCCCTCCCAAGGCTGAGCAACGCCCTGAGTCTGATGGTGATCAAAA-GAAATG 944
Query 297 TGCTAATCGT-GAGAATCATAGGAAGAAGA---AG-CTTAAGTGCCTTGATAGTCTTGTA 351
|||| || || |||||||||| ||| ||| || | ||| || |||||| |||||||
Sbjct 945 TGCTGAT-GTAGAGAATCATATGAACAAGCTTGAGAC--AAG-GC-TTGATACTCTTGTA 999
Query 352 TTTCCCCCAATGAC-GAAAAAGA-TTGATGAGGGGAAG-AAGTCGGTAAAGAAGGTGCAC 408
||||| ||||||| ||||| || || ||||||| ||| |||||| ||||| || |||||
Sbjct 1000 TTTCCGACAATGACTGAAAA-GACTT-ATGAGGG-AAGGAAGTCGATAAAGGAGCTGCAC 1056
Query 409 AAGAAGTTTCTCGTCTTATCCAAGGTTGATAGAACCATCCC 449
|| || | || | |||||| ||| | | | |||||||||
Sbjct 1057 GAGGAGGTAGTCTTTTTATCCGAGGATAAGATAACCATCCC 1097
Score = 353 bits (191), Expect = 3e-96
Identities = 255/284 (90%), Gaps = 11/284 (4%)
Strand=Plus/Plus
Query 1058 TTCCAACAAAGGCTAGAAGAACCATCCCTTCCGAGGCTGAGAAACCTACACACACTGATG 1117
||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1526 TTCCACCAAAGGCTAGAAGAACCATCCCTTCTGAGGCTGAGAAACCTACACACTCTGATG 1585
Query 1118 AATTGAACTTTATGAACAAGCTTAAGACAAGGTTTCAGAGAATCGATACTCATGTAGTTG 1177
||||||| ||||| ||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1586 AATTGAATTTTATAAACAAGCTTAAGACAAGGTTTCAGAGAATTGATAATCATGTAGTTG 1645
Query 1178 GGTCATTTCACTCGATAATGACAATGTAT-AAGGAAGGAAAGAAGTCACGGAAAG-AGGT 1235
||||||||| || |||||||| ||||||| ||| |||||||||||||| | |||| ||||
Sbjct 1646 GGTCATTTCGCTTGATAATGAAAATGTATGAAG-AAGGAAAGAAGTCA-GTAAAGGAGGT 1703
Query 1236 GCACGAGGAGGTCTGTGATCTTCTCTATTACCATGAAGATTTGAGAGCGGATTTCACCAG 1295
|||||||||||||| ||||||||||||||||||||||||| ||| | ||| ||| ||||
Sbjct 1704 GCACGAGGAGGTCTATGATCTTCTCTATTACCATGAAGATCTGATTGAGGACTTCTCCAG 1763
Query 1296 AATCTTTCCTAAACTTGGATCCTTTCGCATCAACATCTCTACTA 1339
|||||||||| | ||||||||||||||||||||||||||
Sbjct 1764 AATCTTTCCT------G-ATCCTTTCGCATCAACATCTCTACTA 1800
Score = 154 bits (83), Expect = 3e-36
Identities = 151/180 (84%), Gaps = 19/180 (11%)
Strand=Plus/Plus
Query 2029 GCAAGGTTTCAGGGCT-ATGGTAGTCATGTAGTTAACTCAGTTCTCCAGATA-TTGAAAA 2086
|||||||||||||| | ||||| ||||||||||||||||||||||||||||| || | |
Sbjct 2227 GCAAGGTTTCAGGG-TGATGGTGGTCATGTAGTTAACTCAGTTCTCCAGATAATT-AGGA 2284
Query 2087 TGTACAGT---GAGGGAAACAAGTCCAAAGATGAGGCGTATCA-G-G--AGG-T-C--G- 2134
|||||| | |||||||||||||||||| ||||||||||||| | | ||| | | |
Sbjct 2285 TGTACACTATTGAGGGAAACAAGTCCAAAAATGAGGCGTATCATGAGGTAGGGTTCTTGG 2344
Query 2135 T--TT-CACTTCTTCAGAATCATGTAGATTTAGTCATGGAGTTTGGCGACTATTTCAGTG 2191
| || ||||||||||| ||||||||||||| |||||||||||||||| ||||| ||||
Sbjct 2345 TCGTTGCACTTCTTCAGGGTCATGTAGATTTAATCATGGAGTTTGGCGAATATTTTAGTG 2404
> Ahg335662 jgi|Araly1|335662|fgenesh1_pg.C_scaffold_1002227
Length=711
Score = 174 bits (94), Expect = 2e-42
Identities = 129/146 (88%), Gaps = 1/146 (1%)
Strand=Plus/Plus
Query 2031 AAGGTTTCAGGGCTATGGTAGTCATGTAGTTAACTCAGTTCTCCAGATATTGAAAATGTA 2090
||||||||||||| ||||||||||||| ||| |||||||||| |||||| ||| ||||||
Sbjct 543 AAGGTTTCAGGGCGATGGTAGTCATGTCGTTGACTCAGTTCTTCAGATAATGAGAATGTA 602
Query 2091 CAGTGAGGGAAACAAGTCCAAAGATGAGGCGTATCAGGAGGTCGTTTCACTTCTTCAGAA 2150
|||||||||||||||||||||| |||| | |||||||||||||| | ||||| |||||
Sbjct 603 CAGTGAGGGAAACAAGTCCAAAAATGATGTGTATCAGGAGGTCGGTGCACTTATTCAGGG 662
Query 2151 TCATGTAGATTTAGTCATGGAG-TTT 2175
||||| ||||||| |||||||| |||
Sbjct 663 TCATGGAGATTTACTCATGGAGCTTT 688
> Ahg930704 jgi|Araly1|930704|scaffold_303161.1
Length=667
Score = 65.8 bits (35), Expect = 1e-09
Identities = 41/44 (93%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 2034 GTTTCAGGGCTATGGTAGTCATGTAGTTAACTCAGTTCTCCAGA 2077
||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 579 GTTTCAGGGAGATGGTAGTCATGTAGTTAACTCAGTTCTTCAGA 622
> Ahg930697 jgi|Araly1|930697|scaffold_303154.1
Length=667
Score = 65.8 bits (35), Expect = 1e-09
Identities = 41/44 (93%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 2034 GTTTCAGGGCTATGGTAGTCATGTAGTTAACTCAGTTCTCCAGA 2077
||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 579 GTTTCAGGGAGATGGTAGTCATGTAGTTAACTCAGTTCTTCAGA 622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84141351205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5