BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24260.2
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472923 jgi|Araly1|472923|fgenesh2_kg.1__2877__AT1G24260.1 1491 0.0
> Ahg472923 jgi|Araly1|472923|fgenesh2_kg.1__2877__AT1G24260.1
Length=924
Score = 1491 bits (807), Expect = 0.0
Identities = 906/949 (95%), Gaps = 26/949 (3%)
Strand=Plus/Plus
Query 190 gagagagagattgagatatcttttgggagaggagaaagaaaaagaaaatgggaagaggga 249
|||||||||| |||| ||||||||||||| | | || || ||||||||||||||||
Sbjct 1 GAGAGAGAGAAGGAGAGATCTTTTGGGAGA-G-G--AG---AA-AAAATGGGAAGAGGGA 52
Query 250 gagtagaattgaagaggatagagaacaagaTCAATAGGCAAGTGACGTTTGCAAAGAGAA 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 GAGTAGAATTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTGACGTTTGCAAAGAGAA 112
Query 310 GGAATGGTCTTTTGAAGAAAGCATACGAGCTTTCAGTTCTATGTGATGCAGAAGTTGCTC 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 GGAATGGTCTTTTGAAGAAAGCATACGAGCTTTCAGTTCTATGTGATGCAGAAGTTGCTC 172
Query 370 TCATCATCTTCTCAAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCGAGCATGCTTC 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 TCATCATCTTCTCAAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCGAGCATGCTTC 232
Query 430 GGACACTGGAGAGGTACCAAAAGTGTAACTATGGAGCACCAGAACCCAATGTGCCTTCAA 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 GGACACTGGAGAGGTACCAAAAGTGTAACTATGGAGCACCAGAACCCAATGTGCCTTCAA 292
Query 490 GAGAGGCCTTAGCAGTTGAACTTAGTAGCCAGCAGGAGTATCTCAAGCTTAAGGAGCGTT 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 293 GAGAGGCCTTAGCAGTTGAACTTAGTAGCCAGCAGGAGTATCTCAAGCTTAAGGACCGTT 352
Query 550 ATGACGCCTTACAGAGAACCCAAAGGAATCTGTTGGGAGAAGATCTTGGACCTCTAAGTA 609
| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 353 ACGACGCCTTACAGAGAACCCAAAGGAATCTACTGGGAGAAGATCTTGGGCCTCTAAGTA 412
Query 610 CAAAGGAGCTTGAGTCACTTGAGAGACAGCTTGATTCTTCCTTGAAGCAGATCAGAGCTC 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CAAAGGAGCTTGAGTCACTTGAGAGACAGCTTGATTCTTCCTTGAAGCAGATCAGAGCTC 472
Query 670 TCAGGACACAGTTTATGCTTGACCAGCTCAACGATCTTCAGAGTAAGGAACGCATGCTGA 729
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 473 TCCGGACACAGTTTATGCTCGACCAGCTCAACGATCTTCAGAGTAAGGAACGCATGCTGA 532
Query 730 CTGAGACAAATAAAACTCTAAGACTAAGGTTAGCTGATGGGTATCAGATGCCACTCCAGC 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CTGAGACAAATAAAACTCTAAGACTAAGGTTAGCTGATGGGTATCAGATGCCACTCCAGC 592
Query 790 TGAACCCTAACCAAGAAGAGGTTGATCACTACGGTCGTCATCATCATCAACAACAACAAC 849
|||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 593 TGAACCCTAACCAAGAAGAGGTTGATCACTACGGTCGTCATCATCA--A-CA-C------ 642
Query 850 ACTCCCAAGCTTTCTTCCAGCCTTTGGAATGTGAACCCATTCTTCAGATCGGGTATCAGG 909
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 643 --TCCCAAGCTTTCTTCCAGCCTTTGGAGTGTGAACCCATTCTTCAGATCGGGTATCAGG 700
Query 910 GGCAACAAGATGGAATGGGAGCAGGACCAAGTGTGAATAATTACATGTTGGGTTGGTTAC 969
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 701 GGCAGCAAGATGGAATGGGAGCAGGACCAAGTCTGAATAATTACATGTTGGGTTGGTTAC 760
Query 970 CTTATGACACCAACTCTATTTGAATCTTTCTCACTTAATCAATCCCTCTCtttttttttt 1029
||||||||||||||||||||||||||||||| ||||||| |||| ||| |||||||||
Sbjct 761 CTTATGACACCAACTCTATTTGAATCTTTCTTACTTAATTAATCTCTC-CTTTTTTTT-- 817
Query 1030 GACATTTTTAAGATGATGTTTCTATTTTATTACCTCTCTCATGTTTTCTGTCTtgtgtgc 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 GACATTTTTAAGATGATGTTTCTATTTTATTACCTCTCTCATGTTTTCTGTCTTGTGTGC 877
Query 1090 atgtgtgtgtgtAATGTTTATGCCCT-TCTATTATTCAATAATTTTTTC 1137
|||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 878 ATGTGTGTGT--AATGTTTATGCCCTATCTATAATTCAATAATTTTTTC 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42507052455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5