BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24265.3
Length=1388
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912544 jgi|Araly1|912544|Al_scaffold_0001_2798 1424 0.0
Ahg921760 jgi|Araly1|921760|scaffold_103041.1 959 0.0
> Ahg912544 jgi|Araly1|912544|Al_scaffold_0001_2798
Length=1050
Score = 1424 bits (771), Expect = 0.0
Identities = 931/1009 (92%), Gaps = 7/1009 (1%)
Strand=Plus/Plus
Query 214 GTCTTATTGGATCAGCATTTTCTAAAGAAGGGGGCTTACCAGATGTCTCCAATTTGGTTT 273
||||| |||| ||||||||| ||| ||||||||||||||||||| |||| ||||||||||
Sbjct 44 GTCTTGTTGGGTCAGCATTTGCTAGAGAAGGGGGCTTACCAGATTTCTCGAATTTGGTTT 103
Query 274 CTGGTGCTTTTAAGATGGTATTCAGGCAACTGAAACAAGACGAACCTAGCAAATCAGCTA 333
|||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct 104 CTGGTGCTTTTAAGATGGTATTTAAGCAACTGAAACAAGAAGAACCTAGCAAATCAGCTA 163
Query 334 GCAAACCCCACGATGATGTACTTGTGGCCCAGGTTAACAGTCTTAGGCATGAGATACAGT 393
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 GCAAGCCCCACAATGATGTACTTGTGGCCCAGGTTAACAGTCTTAGGCATGAGATACAGT 223
Query 394 TGCTGGGGTCAAACAGACCTATCACCATTGTTTCACCTTCAGGATCAGGTGGTAGAAACT 453
||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| |
Sbjct 224 TGCTGGGGTCAAACAGACCTATCACCATTGTTTCAACACCAGGATCAGGTGGTAAAAAGT 283
Query 454 ATGGTTTGATCATTATCGTTGGGGTGATAGGCTACGGATATGTGTGGTGGAAGGGCTGGA 513
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 ATGGTCTGATCATTATCGTTGGGGTGATAGGCTACGGATATGTGTGGTGGAAGGGCTGGA 343
Query 514 AACTTCCAGATTTTATGTTTGCAACAAGGCGTAGCTTATCAGATGCATGTAATAATGTTG 573
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 344 AACTTCCAGATTTTATGTTTGCGACAAGGCGTAGCTTATCAGATGCATGTGATAATGTTG 403
Query 574 GCAACCAGATCGATGGTTTTTACTCATCACTCAAGGGTACAAAACGAG-AGTTAAGTTCA 632
|||| ||||||||||||||||||||||| ||| ||||||||||| || ||||| |||||
Sbjct 404 GCAAACAGATCGATGGTTTTTACTCATCGCTCTCGGGTACAAAAC-AGGAGTTAGGTTCA 462
Query 633 GAAATTGATATGATGGGTCGTCGTTTGGATGCAAATACAGAAGTAATTCAAGAAACAATA 692
|| |||| | | ||||||||||||||||||||||||| ||||| ||| || ||||| |
Sbjct 463 CAAGTTGACAGGGTGGGTCGTCGTTTGGATGCAAATACGGAAGTTATTGAACAAACAGGA 522
Query 693 CAAGAGGTGGCT-AAGCTACAGGATGGTACATCATTTATAAAGGATGACGTTAAGGCTGT 751
| ||||||| | || ||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 523 CGAGAGGTGACGGAA-CTACAGGATGGTACAGCAATTATAAAGGATGACGTTAAGTCTGT 581
Query 752 TTTCGATGCTTTTGAAAATCTGGCAAGCAAAGTGTGTCGTATAGAGGGAAATCAGGATAT 811
||||| |||| |||||| |||||||| |||||| | |||||| |||||||||||||||||
Sbjct 582 TTTCGCTGCTGTTGAAACTCTGGCAAACAAAGTCTATCGTATTGAGGGAAATCAGGATAT 641
Query 812 CACACTTAGAGGAGTTGGGGCTCTGCATGCTCAGTGTCAGGAGAACCAAAGAATTCAAGA 871
||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 642 CACGCTTAGGGGAGTTGGGGCTCTGCATGCTCAGTGTCGGGAGAACCAAAGAATTCAAGA 701
Query 872 GTCCAATAAGGCTTTGCCATCAACTTCATCACTGCCAGCCCTTGAGGCAGCTCCTATGGC 931
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 702 GTCCAATAAGGCTTTGCCATCAACTTCATCAGTGCCAGCCCTTGAGGCAGCTCCTATGAC 761
Query 932 ACCCTCTTCAAAGACTCTGTCTTTACCTCCTGCTTCTCCCGATGAATCCCAGTCCCCGTC 991
||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 762 ACCATCTTCAAGGACTCTGTCTTTACCTCCTGCTTCTCCTGATGAATCCCAGTCGCCGTC 821
Query 992 AACCCCTAATGTAGCTCAAAAGTCACGGGGCCTACTTCAGCACACTCAATCTATGTCTGG 1051
||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 822 AACCCCTAATGGAGCTCAACAGTCACGGGGCCCACTTCAGCACACTCAATCTATGTCTGG 881
Query 1052 TTTGAAGGACATAAATGAAAGCTCTAGTAGCCACAACACGTCTTCAAATGGAATATATTT 1111
||||||||||||||||||||||||||||||| | | |||||||| |||||||||||||
Sbjct 882 TTTGAAGGACATAAATGAAAGCTCTAGTAGCTGCGAGACGTCTTCGAATGGAATATATTC 941
Query 1112 TGGGGGAAACGGTGCATCAGGATCGAGTTCGGGCGTGCTTGGTAGGTTCTCAATAGCAAG 1171
||||||||||||||||||||| |||||||| |||||| ||||||||||||||||| ||||
Sbjct 942 TGGGGGAAACGGTGCATCAGGCTCGAGTTCAGGCGTGTTTGGTAGGTTCTCAATACCAAG 1001
Query 1172 AATAATGAGGACTCGTACTGTGGTCAACACAGTG--T-CTACTAACTGA 1217
|||| ||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1002 AATAGTGAGGACTCGTACTGTGGTCAACACAGTGCCTACTACTAACTGA 1050
> Ahg921760 jgi|Araly1|921760|scaffold_103041.1
Length=1108
Score = 959 bits (519), Expect = 0.0
Identities = 748/859 (87%), Gaps = 14/859 (2%)
Strand=Plus/Plus
Query 214 GTCTTATTGGATCAGCATTTTCTAAAGAAGGGGGCTTACCAGATGTCTCCAATTTGGTTT 273
||||| |||| |||| || ||||||||||| ||||||||||||| || ||||| || |
Sbjct 100 GTCTTGTTGGGTCAGTGCTTGCTAAAGAAGGGAGCTTACCAGATGTTTCGAATTTTGTCT 159
Query 274 CTGGTGCTTTTAAGATGGTATTCAGGCAACTGAAACAAGACGAACCTAGCAAATCAGCTA 333
| |||||| ||||||||||||| ||||| ||||||||||| ||||||| ||||||||| |
Sbjct 160 CCGGTGCTATTAAGATGGTATTTAGGCAGCTGAAACAAGAAGAACCTACCAAATCAGCCA 219
Query 334 GCAAACCCCACGATGATGTACTTGTGGCCCAGGTTAACAGTCTTAGGCATGAGATACAG- 392
|||| |||| | ||||| |||| |||||||||||||||||||||||||||| || ||
Sbjct 220 GCAAGCCCCGCAATGATACACTTATGGCCCAGGTTAACAGTCTTAGGCATGA-ATTGAGC 278
Query 393 TTGCTGGGGTCAAACAGACCTATCACCATTGT-TTCACCTTCAGGATCAGGTGGTAGAAA 451
||||| ||||||||||||||||| ||||| || | ||||||||||||||| |||
Sbjct 279 TTGCTTTCTTCAAACAGACCTATCACTATTGTAACCA-CAGCAGGATCAGGTGGTAAAAA 337
Query 452 CTATGGTTTGATCATTATCGTTGGGGTGATAGGCTACGGATATGTGTGGTGGAAGGGCTG 511
||||||| |||||||| ||||||| ||||||||||||||||| ||||||||||||||
Sbjct 338 GTATGGTTACATCATTATAATTGGGGTTATAGGCTACGGATATGTATGGTGGAAGGGCTG 397
Query 512 GAAACTTCCAGATTTTATGTTTGCAACAAGGCGTAGCTTATCAGATGCATGTAATAATGT 571
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 398 GAAACTTCCAGATTTTATGTTTGCAACAAGGCGCAGCTTATCAGATGCATGTAATAGTGT 457
Query 572 TGGCAACCAGATCGATGGTTTTTACTCATCACTCAAGGGTACAAAACGAGAGTTAAGTTC 631
||||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 458 TGGCAGCCAGATCGATGGTTTTTACACATCACTCTCGGGTACAAAACAAGAGTTAAGTTC 517
Query 632 AGAAATTGATATGATGGGTCGTCGTTTGGATGCAAATACAGAAGTAATTCAAGAAACAAT 691
| ||||||| |||||||||| |||||||||| ||||||||| | ||||||||||||
Sbjct 518 AAAAATTGACGGGATGGGTCGTAGTTTGGATGCTAATACAGAAATTATTCAAGAAACAGG 577
Query 692 ACAAGAGGTG--GCTAAGCTACAG-GATGGTACATCATTTATAAAGGATGACGTTAAGGC 748
|| ||||||| | || ||||| || |||||| | ||| |||||||||||||||
Sbjct 578 ACGAGAGGTGATGG-AA-CTACAAAGA-GGTACAGAAAATATTAAGGATGACGTTAAGTT 634
Query 749 TGTTTTCGATGCTTTTGAAAATCTGGCAAGCAAAGTGTGTCGTATAGAGGGAAATCAGGA 808
||||||||||||| |||||| ||||||||||||||| | |||||| ||||||||||||||
Sbjct 635 TGTTTTCGATGCTGTTGAAACTCTGGCAAGCAAAGTCTATCGTATTGAGGGAAATCAGGA 694
Query 809 TATCACACTTAGAGGAGTTGGGGCTCTGCATGCTCAGTGTCAGGAGAACCAAAGAATTCA 868
|||||| |||| |||||| |||||||||||||||||||||| ||||||| ||||||||||
Sbjct 695 TATCACGCTTAAAGGAGTCGGGGCTCTGCATGCTCAGTGTCGGGAGAACAAAAGAATTCA 754
Query 869 AGAGTCCAATAAGGCTTTGCCATCAACTTCATCACTGCCAGCCCTTGAGGCAGCTCCTAT 928
|||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 755 AGAGTCCAATCAGGCTTTGCCATCAACTTCAGCAGTGCCAGCCCTTGAGGCAGCTCCTAT 814
Query 929 GGCACCCTCTTCAAAGACTCTGTCTTTACCTCCTGCTTCTCCC-GATGAATCCCAGTCCC 987
| |||| || |||| |||| ||||||| ||||||||||||||| | |||||||||||| |
Sbjct 815 GACACCATCGTCAAGGACTTTGTCTTTGCCTCCTGCTTCTCCCCG-TGAATCCCAGTCAC 873
Query 988 CGTCAACCCCTAATGTAGCTCAAAAGTCACGGGG-CCTACTTCAGCACACTCAATCTATG 1046
| ||||| |||||| ||||||| ||||||| || || ||||||||||||||||||||||
Sbjct 874 CTTCAACTTCTAATGGAGCTCAACAGTCACGTGGTCC-ACTTCAGCACACTCAATCTATG 932
Query 1047 TCTGGTTTGAAGGACATAA 1065
|||||||||||||| ||||
Sbjct 933 TCTGGTTTGAAGGAGATAA 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51878913690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5