BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24267.2
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921760 jgi|Araly1|921760|scaffold_103041.1 1637 0.0
Ahg912544 jgi|Araly1|912544|Al_scaffold_0001_2798 1051 0.0
> Ahg921760 jgi|Araly1|921760|scaffold_103041.1
Length=1108
Score = 1637 bits (886), Expect = 0.0
Identities = 975/1017 (96%), Gaps = 9/1017 (1%)
Strand=Plus/Plus
Query 285 AGGTCTTGTTGGGTCAGTACTTGCTAAAGAAGGGAGTTTACCAGATGTCTCGAGTTTTGT 344
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||
Sbjct 98 AGGTCTTGTTGGGTCAGTGCTTGCTAAAGAAGGGAGCTTACCAGATGTTTCGAATTTTGT 157
Query 345 CTCCGGTGCTCTTAAGATGGTATTTAGGCAGCTGAAGCAAGAAGAACCTGCCAAATCAGC 404
|||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 158 CTCCGGTGCTATTAAGATGGTATTTAGGCAGCTGAAACAAGAAGAACCTACCAAATCAGC 217
Query 405 CAGCAAGCCCCGCAATGATACACTAATGGCCCAGGTTAACAGTCTTAGGCATGAATTGAG 464
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 218 CAGCAAGCCCCGCAATGATACACTTATGGCCCAGGTTAACAGTCTTAGGCATGAATTGAG 277
Query 465 CTTGCTTTCTTCAAACAGACCTATCACTATTGTTACCACAGCAGGATCAGGTGGTAAAAA 524
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 278 CTTGCTTTCTTCAAACAGACCTATCACTATTGTAACCACAGCAGGATCAGGTGGTAAAAA 337
Query 525 GTATGGTTACATCATTATAATTGGGGTGATAGGCTACGGATATGTATGGTGGAAGGGCTG 584
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 338 GTATGGTTACATCATTATAATTGGGGTTATAGGCTACGGATATGTATGGTGGAAGGGCTG 397
Query 585 GAAACTTCCGGATCTTATGTTTGCAACAAGGCGCAGCTTATCAGATGCATGTAATAGTGT 644
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 GAAACTTCCAGATTTTATGTTTGCAACAAGGCGCAGCTTATCAGATGCATGTAATAGTGT 457
Query 645 TGGCAGCCAGATCGATGGTTTTTACACATCACTCTCGGGTACCAAAA-AAGAGTTAAGTT 703
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 458 TGGCAGCCAGATCGATGGTTTTTACACATCACTCTCGGGTA-CAAAACAAGAGTTAAGTT 516
Query 704 CAAAAATTGACGGGATGGGTCGTAGTTTGGATGCTAATACAGAAATTATTCAAGATACAG 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 517 CAAAAATTGACGGGATGGGTCGTAGTTTGGATGCTAATACAGAAATTATTCAAGAAACAG 576
Query 764 GACGAGAGGTGATGGAACTACAAAGAGGTACGGAAAATATTAAGGATGACGTTAAGTTTG 823
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 577 GACGAGAGGTGATGGAACTACAAAGAGGTACAGAAAATATTAAGGATGACGTTAAGTTTG 636
Query 824 TTTTCGATGCTGTTGAAAATCTGGTAAGAAAATTGATCTATCGTATTGAGGGAAATCAGG 883
|||||||||||||||||| ||||| ||| ||| | ||||||||||||||||||||||||
Sbjct 637 TTTTCGATGCTGTTGAAACTCTGGCAAGCAAA--G-TCTATCGTATTGAGGGAAATCAGG 693
Query 884 ATATTACACTTAAAGGAGTCGGGGCGCTGCATGCTCAGGT-TCGGGAGAACAAAAGAATT 942
|||| || ||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 694 ATATCACGCTTAAAGGAGTCGGGGCTCTGCATGCTCA-GTGTCGGGAGAACAAAAGAATT 752
Query 943 CAAGAGTCCAATAAGGCTTTACCATCAACTTCAGCAGTGCCAGCCCTTGAGGCAGCTCCT 1002
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 753 CAAGAGTCCAATCAGGCTTTGCCATCAACTTCAGCAGTGCCAGCCCTTGAGGCAGCTCCT 812
Query 1003 ATGACACCATCGTCAAGGACTTTGTCTTTGCCTCCTGCTTCTCCCCGTGAATCTCAGTCG 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 813 ATGACACCATCGTCAAGGACTTTGTCTTTGCCTCCTGCTTCTCCCCGTGAATCCCAGTCA 872
Query 1063 CCTTCAACTTCTAATGGAGCTCAACAGTCACGTGGTCCACTTCAGCACACTCAATCTATG 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 CCTTCAACTTCTAATGGAGCTCAACAGTCACGTGGTCCACTTCAGCACACTCAATCTATG 932
Query 1123 TCTGGTTTGAAGGAGATAAGCGAAAATGGAACACATTCTGGAGAAACTACGGGAAACACG 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 933 TCTGGTTTGAAGGAGATAAGCGAAAATGGAACACATTCTGGAGAAACTACGGGGAACACA 992
Query 1183 AGTTCTGGCCTGTTTAGTATTTTCTCAATACCAAGAATAGGGAGGACTCGAAGTGTGGTC 1242
||||| |||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 993 AGTTCAGGCCTGTTTAGTATGTTCTCAATGCCAAGAATAGGGAGGACTCGTAGTGTGGTC 1052
Query 1243 AACACAGTGCCTACTAACTCCATTGGACCCCAATAGTCGTCT-GTCAATACTGAAGA 1298
||||||||||||||||||||| |||||||||||||| | || ||||||||||||||
Sbjct 1053 AACACAGTGCCTACTAACTCCGTTGGACCCCAATAGGGG-CTTGTCAATACTGAAGA 1108
> Ahg912544 jgi|Araly1|912544|Al_scaffold_0001_2798
Length=1050
Score = 1051 bits (569), Expect = 0.0
Identities = 798/907 (88%), Gaps = 21/907 (2%)
Strand=Plus/Plus
Query 244 ATGGCTATTCCTCTCGGGAAGCTCACCATCCTCATCGGTGCAGGTCTTGTTGGGTCAGTA 303
|||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |
Sbjct 1 ATGGCTATCCCTCTCGGGAAGCTCACTATCCTCATCGGCGCAGGTCTTGTTGGGTCAGCA 60
Query 304 CTTGCTAAAGAAGGGAGTTTACCAGATGTCTCGAGTTTTGTCTCCGGTGCTCTTAAGATG 363
|||||| ||||||| | ||||||||| |||||| ||| || || |||||| ||||||||
Sbjct 61 TTTGCTAGAGAAGGGGGCTTACCAGATTTCTCGAATTTGGTTTCTGGTGCTTTTAAGATG 120
Query 364 GTATTTAGGCAGCTGAAGCAAGAAGAACCT-GCCAAATCAGCCAGCAAGCCCCGCAATGA 422
||||||| ||| ||||| |||||||||||| | ||||||||| |||||||||| ||||||
Sbjct 121 GTATTTAAGCAACTGAAACAAGAAGAACCTAG-CAAATCAGCTAGCAAGCCCCACAATGA 179
Query 423 TACACTAATGGCCCAGGTTAACAGTCTTAGGCATGA-ATTGAGCTTGCTTTCTTCAAACA 481
| ||| |||||||||||||||||||||||||||| || || ||||| |||||||
Sbjct 180 TGTACTTGTGGCCCAGGTTAACAGTCTTAGGCATGAGATACAG-TTGCTGGGGTCAAACA 238
Query 482 GACCTATCACTATTGTTACCACAGCAGGATCAGGTGGTAAAAAGTATGGT-TACATCATT 540
|||||||||| |||||| | ||| |||||||||||||||||||||||||| | ||||||
Sbjct 239 GACCTATCACCATTGTTTCAACACCAGGATCAGGTGGTAAAAAGTATGGTCT-GATCATT 297
Query 541 ATAATTGGGGTGATAGGCTACGGATATGTATGGTGGAAGGGCTGGAAACTTCCGGATCTT 600
|| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||
Sbjct 298 ATCGTTGGGGTGATAGGCTACGGATATGTGTGGTGGAAGGGCTGGAAACTTCCAGATTTT 357
Query 601 ATGTTTGCAACAAGGCGCAGCTTATCAGATGCATGTAATAGTGTTGGCAGCCAGATCGAT 660
|||||||| |||||||| |||||||||||||||||| ||| |||||||| |||||||||
Sbjct 358 ATGTTTGCGACAAGGCGTAGCTTATCAGATGCATGTGATAATGTTGGCAAACAGATCGAT 417
Query 661 GGTTTTTACACATCACTCTCGGGTACCAAAA-AAGAGTTAAGTTCAAAAATTGAC-GGGA 718
||||||||| |||| |||||||||| ||||| | |||||| ||||| || ||||| |||
Sbjct 418 GGTTTTTACTCATCGCTCTCGGGTA-CAAAACAGGAGTTAGGTTCACAAGTTGACAGGG- 475
Query 719 TGGGTCGTAGTTTGGATGCTAATACAGAAATTATTCAAGATACAGGACGAGAGGTGATGG 778
|||||||| |||||||||| ||||| ||| ||||| || | |||||||||||||||| ||
Sbjct 476 TGGGTCGTCGTTTGGATGCAAATACGGAAGTTATTGAACAAACAGGACGAGAGGTGACGG 535
Query 779 AACTACAAAGA-GGTACGGAAAATATTAAGGATGACGTTAAGTTTGTTTTCGATGCTGTT 837
|||||| | || ||||| | || ||| |||||||||||||||| |||||||| |||||||
Sbjct 536 AACTAC-AGGATGGTACAGCAATTATAAAGGATGACGTTAAGTCTGTTTTCGCTGCTGTT 594
Query 838 GAAAATCTGGTAAGA-AAATTGATCTATCGTATTGAGGGAAATCAGGATATTACACTTAA 896
|||| ||||| || | ||| | |||||||||||||||||||||||||||| || ||||
Sbjct 595 GAAACTCTGGCAA-ACAAA--G-TCTATCGTATTGAGGGAAATCAGGATATCACGCTTAG 650
Query 897 AGGAGTCGGGGCGCTGCATGCTCAGGT-TCGGGAGAACAAAAGAATTCAAGAGTCCAATA 955
||||| ||||| ||||||||||| || |||||||||| |||||||||||||||||||||
Sbjct 651 GGGAGTTGGGGCTCTGCATGCTCA-GTGTCGGGAGAACCAAAGAATTCAAGAGTCCAATA 709
Query 956 AGGCTTTACCATCAACTTCAGCAGTGCCAGCCCTTGAGGCAGCTCCTATGACACCATCGT 1015
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 710 AGGCTTTGCCATCAACTTCATCAGTGCCAGCCCTTGAGGCAGCTCCTATGACACCATCTT 769
Query 1016 CAAGGACTTTGTCTTTGCCTCCTGCTTCTCCCCG-TGAATCTCAGTCGCCTTCAACTTCT 1074
|||||||| ||||||| |||||||||||| || | |||||| |||||||| ||||| ||
Sbjct 770 CAAGGACTCTGTCTTTACCTCCTGCTTCT-CCTGATGAATCCCAGTCGCCGTCAACCCCT 828
Query 1075 AATGGAGCTCAACAGTCACGTGGTCCACTTCAGCACACTCAATCTATGTCTGGTTTGAAG 1134
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 829 AATGGAGCTCAACAGTCACGGGGCCCACTTCAGCACACTCAATCTATGTCTGGTTTGAAG 888
Query 1135 GAGATAA 1141
|| ||||
Sbjct 889 GACATAA 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62239460330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5