BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24280.1
Length=2047
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921758 jgi|Araly1|921758|scaffold_103039.1 2961 0.0
Ahg940776 jgi|Araly1|940776|scaffold_601320.1 1694 0.0
> Ahg921758 jgi|Araly1|921758|scaffold_103039.1
Length=1848
Score = 2961 bits (1603), Expect = 0.0
Identities = 1744/1812 (96%), Gaps = 10/1812 (1%)
Strand=Plus/Plus
Query 54 TCGTCTCTCTCCTGCCCTACCTACCGCTCCCGCACTTCGTCTTCGTCTCCTTTCTTGTCG 113
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 38 TCGTCTCTCTCCTGCCCTACCTACCGCTCCCGCACTT-G--GTCGTCTCCTTTCTTGTCG 94
Query 114 AATCATCATCATTCTTCGCTGATCAATGTTGTTGACCCACGCCGCTCACTCTCCTTCCAC 173
|||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 95 AATCATTATCATTCTTCGCTGATCAATGTTGTTGATCCACGCCGGTCACTCTCCTTCCAC 154
Query 174 TACGCTTCTCCTCAGGGGCTTAATCTAG-CTGAGCTCTGTGTTGTTAGATCGCAGAGGAG 232
||||||||||||||||||||||| || | | |||||| || |||||||||||||||||
Sbjct 155 TACGCTTCTCCTCAGGGGCTTAACCTCGAC-GAGCTC--TG-TGTTAGATCGCAGAGGAA 210
Query 233 GTCCGTTCAGAGTTCTGTTGTCGTGCAAGATGGATCAGTAGCCACCGAGTCAAGCTCGTC 292
||||||||||||||||||||||| ||||||||| |||||||||||| |||||||| || |
Sbjct 211 GTCCGTTCAGAGTTCTGTTGTCGCGCAAGATGGCTCAGTAGCCACCAAGTCAAGCCCGGC 270
Query 293 CGAGGAGGCGAAAGATGTAGGGGTGTTAACGATTCCTTCACTTGAAGCTGACAAGGTTGT 352
|||||| ||||||||| ||| ||||||||||||| |||||||||||||||||||||||
Sbjct 271 CGAGGAACCGAAAGATGGAGGCTTGTTAACGATTCCCTCACTTGAAGCTGACAAGGTTGT 330
Query 353 AGCAGAGTCTGATGGCGGTGAACAACTTTCAACAGTTAGTATCACGGTGGTGGGAGCTTC 412
|||||||||||||||||||||||| | |||||||| |||||||||||||||||||| ||
Sbjct 331 AGCAGAGTCTGATGGCGGTGAACACCAGTCAACAGTCAGTATCACGGTGGTGGGAGCCTC 390
Query 413 TGGTGATCTTGCCAAGAAGAAAATATTCCCAGCTCTTTTCGCACTTTACTATGAAGGCTG 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 TGGTGATCTTGCCAAGAAGAAAATATTCCCAGCTCTTTTCGCACTTTACTATGAAGGCTG 450
Query 473 TCTTCCTGAGCATTTTACCATTTTTGGCTATGCAAGGAGTAAGATGACAGATGCTGAACT 532
|||||||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 451 TCTTCCTGAGCATTTTACAATATTCGGCTATGCAAGGAGTAAGATGACAGATGCTGAACT 510
Query 533 TAGAGTTATGGTCAGCAAAACATTGACATGTAGAATTGATAAGAGGGCAAACTGCGGTGA 592
| ||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 511 TCGAGATATGGTTAGCAAAACACTGACATGTAGAATTGATAAGAGGGCAAACTGCGGTGA 570
Query 593 AAAGATGGAAGAGTTTCTCAAGAGATGTTTTTACCATTCGGGTCAGTATGATTCTCAGGA 652
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 571 AAAGATGGAAGAGTTTCTCAAGAGATGTTTTTACCATTCTGGTCAGTATGATTCTCAGGA 630
Query 653 ACATTTTGTTGCATTGGACGAGAAGCTCAAGGAGCATGAGGGTGGAAGACTTTCGAACCG 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 ACATTTTGTTGCATTGGACGAGAAGCTCAAGGAGCATGAGGGTGGAAGACTTTCGAACCG 690
Query 713 TCTTTTCTATCTTTCAATCCCTCCAAATATCTTTGTTGACGCGGTGAAATGTGCAAGCTC 772
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 CCTTTTCTATCTTTCAATCCCTCCAAATATCTTTGTTGACGCGGTGAAATGTGCAAGCTC 750
Query 773 ATCTGCTTCATCTGTCAATGGATGGACTAGGGTCATTGTCGAGAAACCTTTTGGCCGGGA 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 751 ATCTGCTTCATCTGTCAATGGATGGACTAGGGTCATTGTCGAGAAACCTTTTGGCCGTGA 810
Query 833 CT-CCAAAACCTCGGCTGCATTAACAAAGTCTCTTAAGCAGTACCTGGAGGAAGACCAAA 891
| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 811 -TGCCAAAACCTCAGCTGCTTTAACAAAGTCTCTTAAGCAGTACCTGGAGGAAGACCAAA 869
Query 892 TATTTAGGATAGACCATTACTTAGGGAAGGAGCTGGTTGAGAACTTGTCGGTTCTTCGAT 951
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 870 TATTTAGGATAGACCATTACTTAGGAAAGGAGCTAGTTGAGAACTTGTCGGTTCTTCGAT 929
Query 952 TCTCAAATCTTATATTTGAACCGCTATGGTCAAGGCAGTATATAAGGAACGTGCAATTCA 1011
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 930 TCTCAAATCTTATATTTGAACCGTTATGGTCAAGGCAGTATATAAGGAACGTGCAATTCA 989
Query 1012 TTTTTTCTGAGGATTTCGGCACTGAAGGACGCGGAGGGTACTTCGACAATTACGGAATAA 1071
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 990 TATTTTCTGAGGATTTCGGCACTGAAGGACGCGGAGGGTACTTTGACAATTACGGAATAA 1049
Query 1072 TAAGAGATATAATGCAGAATCATCTGCTTCAGATATTAGCTCTTTTCGCCATGGAAACAC 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 TAAGAGATATAATGCAGAATCATCTGCTTCAGATATTAGCTCTTTTCGCCATGGAAACAC 1109
Query 1132 CTGTGAGTTTGGATGCAGAGGATATCAGAAATGAAAAGGTAAAGGTACTACGTTCAATGA 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 CTGTGAGTTTGGATGCAGAGGATATCAGAAATGAAAAGGTAAAGGTACTACGTTCAATGA 1169
Query 1192 GACCAATAAAACTTGAAGATGTGGTGATAGGACAGTACAAGAGCCACAGCATAGGAGGAG 1251
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 GGCCAATACAACTTGAAGATGTGGTGATAGGACAGTACAAGAGCCACAGCATAGGAGGAG 1229
Query 1252 TCACTTATCCAAGCTATACTGATGATAAAACTGTGCCAAAAGGTAGTCTGACCCCGACAT 1311
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1230 TCACTTATCCAGGCTATACTGATGATAAAACTGTGCCAAAAGGTAGCCTGACCCCGACAT 1289
Query 1312 TTGCAGCTGCTGCACTCTTCATCGACAATGCAAGATGGGATGGTGTACCTTTTCTAATGA 1371
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1290 TTGCAGCTGCTGCACTCTTCATCGACAATGCAAGATGGGATGGCGTACCTTTTCTAATGA 1349
Query 1372 AAGCTGGGAAAGCACTAAACACCCGAAGTGCGGAGATAAGAGTCCAGTTCAGGCATGTGC 1431
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 1350 AAGCTGGGAAAGCACTAAACACCCGGAGTGCGGAGATAAGGGTGCAGTTCAGGCATGTGC 1409
Query 1432 CTGGAAATTTATATAACCGGAATTCTGGTACTGATCGTGATCAGACCACAAATGAGCTTG 1491
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1410 CTGGAAATTTATATAACCGGAATTCTGGTACTGATCTTGACCAGACCACAAATGAGCTTG 1469
Query 1492 TCATCCGCGTCCAACCTGATGAAGCTATCTATTTGAAAATCAACAACAAGGTCCCTGGTT 1551
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 TCATCCGCGTCCAACCAGATGAAGCTATCTATTTGAAAATCAACAACAAGGTCCCTGGTT 1529
Query 1552 TAGGAATGAGATTAGATCAGAGTAACTTAAATCTTCTCTATTCAGCAAGGTATTCAAAGG 1611
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1530 TAGGAATGAGATTAGATCGGAGTAACTTAAATCTTCTTTATTCAGCAAGGTATTCAAAGG 1589
Query 1612 AGATTCCAGATGCATATGAGAGGCTTTTGTTAGATGCGATCGAAGGTGAACGCAGATTGT 1671
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1590 AGATTCCAGATGCATATGAGAGGCTTTTGTTAGATGCGATCGAAGGCGAACGCAGGTTGT 1649
Query 1672 TCATAAGAAGCGATGAACTTGACGCTGCTTGGGCGCTTTTCACTCCATTGCTCAAAGAGA 1731
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1650 TCATAAGAAGCGATGAACTTGATGCTGCTTGGGCGCTTTTCACTCCATTGCTCAAAGAGA 1709
Query 1732 TAGAAGAAAAGAAGACAACCCCAGAATTCTATCCTTACGGCAGTCGTGGTCCAGTCGGTG 1791
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1710 TAGAAGAAAAGAAGACAATCCCAGAATTCTATCCTTACGGCAGTCGTGGTCCAGTCGGTG 1769
Query 1792 CCCATTATCTAGCCGCAAAACACAAGGTCCAATGGGGAGACCTAAGTCTTGATCAGTGAA 1851
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1770 CCCATTATCTAGCCGCAAAACACAAGGTCCAATGGGGAGACCTAAGTCTGGATCAGTGAA 1829
Query 1852 AGAGTGGAAGAA 1863
||||||||||||
Sbjct 1830 AGAGTGGAAGAA 1841
> Ahg940776 jgi|Araly1|940776|scaffold_601320.1
Length=1835
Score = 1694 bits (917), Expect = 0.0
Identities = 1297/1482 (88%), Gaps = 20/1482 (1%)
Strand=Plus/Plus
Query 381 TCAACAGTTAGTATCACGGTGGTGGGAGCTTCTGGTGATCTTGCCAAGAAGAAAATATTC 440
|||||||||||||||||||| || ||||| || |||||||||||||| ||||| || |||
Sbjct 343 TCAACAGTTAGTATCACGGTTGTTGGAGCCTCCGGTGATCTTGCCAAAAAGAAGATTTTC 402
Query 441 CCAGCTCTTTTCGCACTTTACTATGAAGGCTGTCTTCCTGAGCATTTTACCATTTTTGGC 500
|| ||||||||||| ||||||||||||| |||||||| ||||||||||| || || ||
Sbjct 403 CCGGCTCTTTTCGCCCTTTACTATGAAGATTGTCTTCCCGAGCATTTTACGATATTCGGT 462
Query 501 TATGCAAGGAGTAAGATGACAGATGCTGAACTTAGAGTTATGGTCAGCAAAA-CATTGAC 559
||| | |||||||||||||||||||||||||||||| ||||||||||||| | || ||
Sbjct 463 TATTCTAGGAGTAAGATGACAGATGCTGAACTTAGAAACATGGTCAGCAAAACCCTT-AC 521
Query 560 ATGTAGAATTGATAAGAGGGCAAACTGCGGTGAAAAGATGGAAGAGTTTCTCAAGAGATG 619
||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 522 ATGCAGAATTGATAAGAGGGCAAACTGTGGTGAAAAGATGGAAGAATTTCTCAAGAGATG 581
Query 620 TTTTTACCATTCGGGTCAGTATGATTCTCAGGAACATTTTGTTGCATTGGACGAGAAGCT 679
|||||||||||| |||||||||||||| |||||||||||| || ||||||| |||||||
Sbjct 582 TTTTTACCATTCTGGTCAGTATGATTCGCAGGAACATTTTACTGAATTGGACAAGAAGCT 641
Query 680 CAAGGAGCATGAGGGTGGAAGACTTTCGAACCGTCT-TTTCTATCTT-TCAATCCCTCCA 737
|||||| ||||||| ||||||| | || || || || ||| ||| || || |||||||||
Sbjct 642 CAAGGAACATGAGGCTGGAAGAATCTCAAATCGCCTCTTT-TAT-TTGTCTATCCCTCCA 699
Query 738 AATATCTTTGTTGACGCGGTGAAATGTGCAAGCTCATCTGCTTCATCTGTCAATGGATGG 797
||||| |||||||| || ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 700 AATATATTTGTTGATGCTGTGAAATGTGCAAGCACATCTGCTTCATCTGTCAATGGATGG 759
Query 798 ACTAGGGTCATTGTCGAGAAACCTTTTGGCCGGGACTCCAAAACCTCGGCTGCATTAAC- 856
||||||||||||||||||||||||||||| || || || ||||||| ||||| |||||
Sbjct 760 ACTAGGGTCATTGTCGAGAAACCTTTTGGTCGAGATTCTGAAACCTCTGCTGCTTTAACG 819
Query 857 AAAGTCTCTTAAGCAGTACCTGGAGGAAGACCAAATATTTAGGATAGACCATTACTTAGG 916
||| || ||||||||||| |||||||||| ||||| |||||||||||||||||| ||||
Sbjct 820 AAA-TCCCTTAAGCAGTATTTGGAGGAAGATCAAATTTTTAGGATAGACCATTACCTAGG 878
Query 917 GAAGGAGCTGGTTGAGAACTTGTCGGTTCTTCGATTCTCAAATCTTATATTTGAACCGCT 976
|| ||||| || |||||||| || ||||||||||||||||| ||||||||||| |||||
Sbjct 879 AAAAGAGCTAGTCGAGAACTTATCTGTTCTTCGATTCTCAAACCTTATATTTGAGCCGCT 938
Query 977 ATGGTCAAGGCAGTATATAAGGAACGTGCAATTCATTTTTTCTGAGGATTTCGGCACTGA 1036
||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||||
Sbjct 939 ATGGTCAAGGCAGTATATAAGAAACGTGCAATTTATATTTTCTGAGGATTTTGGCACTGA 998
Query 1037 AGGACGCGGAGGGTACTTCGACAATTACGGAATAATAAGAGATATAATGCAGAATCATCT 1096
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 999 AGGACGAGGAGGGTACTTCGACAATTACGGCATAATAAGAGATATAATGCAGAATCATCT 1058
Query 1097 GCTTCAGATATTAGCTCT-TTTCGCCATGGAAACACCTGTGAGTTTGGATGCAGAGGATA 1155
|||||| || |||| || ||| ||||||||||| ||||| ||||||||||||||||| |
Sbjct 1059 GCTTCAAATCCTAGCCCTCTTT-GCCATGGAAACGCCTGTTAGTTTGGATGCAGAGGACA 1117
Query 1156 TCAGAAATGAAAAGGTAAAGGTACTACGTTCAATGAGACCAATAAAACTTGAAGATGTGG 1215
||||||| |||||||| ||||| ||||||||||||| ||||| | ||||||||||||
Sbjct 1118 TCAGAAACGAAAAGGTTAAGGTGTTACGTTCAATGAGGCCAATTCGAGTTGAAGATGTGG 1177
Query 1216 TGATAGGACAGTACAAGAGCCACAGCATAGG-AGGAGTCACTTATCCAAGC-TATACTGA 1273
| |||||||| ||||||||||||| || ||| |||||| || ||||| || || || ||
Sbjct 1178 TAATAGGACAATACAAGAGCCACA-CAAAGGGAGGAGTGACATATCCT-GCCTACACCGA 1235
Query 1274 TGATAAAACTGTGCCAAAAGGTAGTCTGACCCCGACATTTGCAGCTGCTGCACTCTTCAT 1333
|||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1236 TGATAAAACTGTACCAAAAGGTAGTCTGACTCCGACATTTGCAGCTGCTGCTCTTTTCAT 1295
Query 1334 CGACAATGCAAGATGGGATGGTGTACCTTTTCTAATGAAAGCTGGGAAAGCACTAAACAC 1393
|||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| ||||
Sbjct 1296 CGACAATGCAAGATGGGACGGTGTGCCTTTTCTAATGAAAGCTGGCAAAGCACTACACAC 1355
Query 1394 CCGAAGTGCGGAGATAAGAGTCCAGTTCAGGCATGTGCCTGGAAATTTATATAACCGGAA 1453
| | ||||| |||||||| || |||||||||||||| || || ||||| ||||| |||||
Sbjct 1356 CAGGAGTGCAGAGATAAGGGTGCAGTTCAGGCATGTTCCGGGGAATTTGTATAATCGGAA 1415
Query 1454 TTCTGGTACTGATCGTGATCAGACC-ACAAATGAGCTTGTCATCCGCGTCCAACCTGATG 1512
| ||||| |||||| |||||| | | |||||||||||||| ||||| |||||||| ||||
Sbjct 1416 TACTGGTTCTGATCTTGATCA-AGCTACAAATGAGCTTGTGATCCGTGTCCAACCAGATG 1474
Query 1513 AAGCTATCTATTTGAAAATCAACAACAAGGTCCCTGGTTTAGGAATGAGATTAGATCAG- 1571
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1475 AAGCAATCTATTTGAAAATCAACAACAAGGTCCCTGGTTTAGGGATGAGATTAGATC-GC 1533
Query 1572 AGTAACTTAAATCTTCTCTATTCAGCAAGGTATTCAAAGGAGATTCCAGATGCATATGAG 1631
|||||||| |||||| | || ||||||||||||||||||||||| |||||||||||||||
Sbjct 1534 AGTAACTTGAATCTTTTATACTCAGCAAGGTATTCAAAGGAGATACCAGATGCATATGAG 1593
Query 1632 AGGCTTTTGTTAGATGCGATCGAAGGTGAACGCAGATTGTTCATAAGAAGCGATGAACTT 1691
|| ||| || ||||||| || ||||| ||| | || |||||||||||||| ||||| |||
Sbjct 1594 AGACTTCTGCTAGATGCAATTGAAGGAGAAAGAAGGTTGTTCATAAGAAGTGATGAGCTT 1653
Query 1692 GACGCTGCTTGGGCGCTTTTCACTCCATTGCTCAAAGAGATAGAAGAAAAGAAGACAACC 1751
|| || |||||| | || |||||||||||||| |||||||||||||| ||||||| || |
Sbjct 1654 GATGCAGCTTGGTCTCTATTCACTCCATTGCTTAAAGAGATAGAAGAGAAGAAGAGAATC 1713
Query 1752 CCAGAATTCTATCCTTACGGCAGTCGTGGTCCAGTCGGTGCCCATTATCTAGCCGCAAAA 1811
|| || | ||||||||| || || |||||||| || ||||| || |||||||| || ||
Sbjct 1714 CCTGAGTACTATCCTTATGGTAGCCGTGGTCCTGTTGGTGCTCACTATCTAGCTGCTAAG 1773
Query 1812 CACAAGGTCCAATGGGGAGACCTAAGTC-TTGATCAGTGAAA 1852
|||||||| |||||||| ||| | || | |||| |||| |||
Sbjct 1774 CACAAGGTGCAATGGGGTGACGTTAG-CATTGACCAGTAAAA 1814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76980385145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5