BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24290.1
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472917 jgi|Araly1|472917|fgenesh2_kg.1__2871__AT1G24290.1 2525 0.0
> Ahg472917 jgi|Araly1|472917|fgenesh2_kg.1__2871__AT1G24290.1
Length=1697
Score = 2525 bits (1367), Expect = 0.0
Identities = 1587/1691 (94%), Gaps = 23/1691 (1%)
Strand=Plus/Plus
Query 29 TTTTTCACAGTAGAAGTAGAAGATGGAGCAGCTAGTGAGCATGGGTTTCTCCAGCGATTT 88
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTCCACAGTAGAAGTAGAAGATGGAGCAGCTAGTGAGCATGGGTTTCTCCAGCGATTT 60
Query 89 GGCCGCCGAGGCTTTAACGGCCACCGGCGGAGATTCCATCCAGAAAGCCACCGACTGGAT 148
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 GGCCGCCGAGGCTTTAACGGCCACCGGCGGAGATTCCATTCAGAAAGCCACCGACTGGAT 120
Query 149 TCTCTCCCACCGTTCTTCCCCTCAATCCACGGCCACGTTACAGCCCAAACTCGACCGCTT 208
|||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 121 TCTCTCCCACCGCTCTTCCCCCCAATCCACCGCCACGTTACAGCCCAAACTCGACCGCTT 180
Query 209 CCTCCGTCTCCATCCCAAAGCCCTA-GCCCCCGCCATGGGTGACGATTCCAGCAAGCGCC 267
|||||| ||| |||||||| ||||| ||||| | | ||||||||||||||||||||||||
Sbjct 181 CCTCCGCCTCAATCCCAAAACCCTAAGCCCC-GTCGTGGGTGACGATTCCAGCAAGCGCC 239
Query 268 CCAATCCCAAAACCCAAATCCACGTCGCGGCTGATGATTCCAACAAGCGTCACAAGCTCT 327
| ||||| |||||||||||| || |||||||||||||||||||||||| | ||||||||
Sbjct 240 CTAATCCGGAAACCCAAATCCCCGGCGCGGCTGATGATTCCAACAAGCGCCCCAAGCTCT 299
Query 328 CATCATCCAGCCACCGCCAACACCAGCCATTGTCGGAGCGTATGCGTCCTCGCACTCTAG 387
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 300 CATCATCCCGCCACCGCCAACACCAGCCATTGTCGGAGCGTATGCGTCCTCGCACACTCG 359
Query 388 ATGACGTTGTAGGTCAAGACCATCTCCTCTCTCCCAGCT-CTCTCCTCCGTTCCGCCGTC 446
| || |||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||
Sbjct 360 ACGATGTTGTAGGTCAAGACCATCTCCTCTCACCC-GCTTCTCTCCTCCGTTCCGCCATC 418
Query 447 GAATCCAATCGCCTCCCTTCCATTGTCTTCTGGGGTCCTCCTGGCACTGGAAAGACCTCA 506
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 419 AAATCCAATCGCCTCCCTTCTATTGTCTTCTGGGGTCCTCCTGGCACCGGAAAGACCTCA 478
Query 507 ATCGCAAAGTCTCTCATCAATTCCTCTAAGGACCCGTCTCTGTATCGCTTCGTTTCCTTG 566
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 479 ATCGCCAAGTCTCTCATCAATTCATCTAAGGACCCGTCTCTGTATCGCTTCGTCTCCTTG 538
Query 567 TCTGCTGTTACGAGCGGAGTTAAAGATGTTAGAGACGCCGTTGAGAGTGCCAAAAGGCTT 626
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 539 TCTGCTGTTACTAGCGGGGTTAAGGATGTTAGAGACGCCGTTGAGAGTGCCAAAAGGCTT 598
Query 627 AATCTTGAAGGTAGAAAGAGGACTGTGTTGTTTATGGATGAGGTTCATAGGTTTAACAAG 686
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AATCTTGAAGGTAAAAAGAGGACTGTGTTGTTTATGGATGAGGTTCATAGGTTTAACAAG 658
Query 687 TCACAGCAAGA-TACATTCTTGCCTGTTATTGAAGATGGTAGTATCCTCTTCATTGGAGC 745
||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 659 TCACAGCAAGACT-CATTCTTGCCTGTTATTGAAGATGGTACTATCCTCTTCATTGGAGC 717
Query 746 CACCACTGAGAACCCTTCTTTCCATTTGATCACTCCTTTGCTCTCACGTTGTAGAGTTCT 805
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CACCACTGAGAACCCATCTTTCCATTTGATCACTCCTTTGCTCTCACGTTGTAGAGTTCT 777
Query 806 AACTCTTAATCCCTTGAAACCCAATCATGTTGAGACCCTTCTTAGACGAGCTGTAGATGA 865
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 778 TACTCTTAATCCCTTGAAACCCAACCATGTTGAGACCCTTCTTAGACGAGCTGTAGATGA 837
Query 866 TTCCGAGAGAGGACTCCCCAATAGCGTTGAGGTTGATGATTCTGTCATAGAGTTCTTGGC 925
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 838 TTCCGAGAGAGGACTCTCCAATAGCGTTGAGGTTGATGATTCTGTCATTGAGTTCTTGGC 897
Query 926 TAATAACTGCGATGGTGATGCTCGCGTCGCGTTGAATGCTTTGGAAATCTCAGCTACCAT 985
| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 898 TTATAACTGCGATGGTGATGCACGCGTCGCGTTGAATGCTTTGGAAATATCAGCTACTAT 957
Query 986 GGCTACCACTCGAGCCGGAACTGATGCTGTTGTGTCTATTGATGATGCGAAGGAGGCTCT 1045
||||||| ||||||||||| |||| ||||||||||||||||||||||| |||||||||||
Sbjct 958 GGCTACCGCTCGAGCCGGATCTGAGGCTGTTGTGTCTATTGATGATGCAAAGGAGGCTCT 1017
Query 1046 TCAGTGCAAACATTTGGCATATGACAAGGCAGGGGAACAACATTACAACCTCATAAGCGC 1105
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1018 TCAGTGCAAACATTTGGCCTATGACAAGGCAGGGGATCAACATTACAACCTCATAAGCGC 1077
Query 1106 ACTTCACAAGTCTATGCGAGGCGGAGATGCTAATGCTGCAATCTACTGGTTGGCTAGAAT 1165
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1078 ACTTCACAAGTCTATGCGAGGAGGAGATGCTAATGCTGCAATCTACTGGCTGGCTAGAAT 1137
Query 1166 GCTCGAGGGTGGTGAAGAGCCGCTTTACATTGCAAGGAGACTTATAAGGTTTGCAAGCGA 1225
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1138 GCTCGAGGGTGGTGAAGAGCCGCTTTACATTGCGAGGAGACTTATAAGGTTTGCAAGCGA 1197
Query 1226 GGACATTGGACTTGCTGACCCTTCAGCTCTTACTCAGGCAGTTGCGTGCTATCAAGCTTC 1285
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1198 GGACATTGGGCTTGCTGACCCTTCAGCTCTTACCCAGGCAGTTGCGTGCTATCAAGCTTC 1257
Query 1286 ACATTTCTTGGGTATGCCTGAATGCAATGTCATTCTCGCCCAATGCACTGCTTACTTGGC 1345
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1258 GCATTTCTTGGGTATGCCTGAATGCAATGTGATTCTCGCCCAATGCACCGCTTACTTGGC 1317
Query 1346 ACTGGCTCCTAAATCCATTGCAGTTTACCGAGCAATCGGAGCTGCACAGAAGGTTGTGAA 1405
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1318 ACTGGCTCCTAAATCTGTTGCAGTTTACCGAGCAATAGGAGCTGCACAGAAGGTTGTGAA 1377
Query 1406 AGACTCGGTTGGACAGAATGAAGGGGTGCCTCTACACCTGAGGAACGCTCCAACCAAGTT 1465
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1378 GGACTCGGTTGGACAGAATGAAGGAGTCCCTCTACACCTGAGGAACGCTCCAACCAAGTT 1437
Query 1466 AATGAAGGAACTTGGCTATGGAAAAGAGTATATATATCCTCCC-AGTGATCCTTCTTCTG 1524
|||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1438 AATGAAGGAACTCGGCTATGGAAAAGAGTATATATATCCTCCGGA-TGATCCTTCTTCTG 1496
Query 1525 CTGCAGGTCAGACATATCTACCTCCGTCTCTTCTGCATCATAAGTTCCTGGAATGGCCAG 1584
| |||| ||||| |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1497 CGGCAGCTCAGAAATATTTACCTCCGTCTCTTCTGCATTATAAGTTCCTGGAATGGCCAC 1556
Query 1585 AAGGGGCTTCAGGCGATTTCCAAGATCAAGAACACAGGCTCTAACCAGTATTTTTTCTCT 1644
| || |||||||| ||| |||||||||| ||||||| | ||||||| | || |
Sbjct 1557 ATGGTGCTTCAGGTGATCTCCAAGATCAGGAACACAAGTTCTAACC--T-------CT-T 1606
Query 1645 CTTTTTGGTATGTGATGTATAGAG-GA-TCATGTTGTTCAAGTCTTTGCAGAGGCTACAC 1702
||| |||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 1607 -TTT--GGTATGTGATGTATAGAGAGAATCATGTTGTTCAAGTCTTTGAAGAGGCTACAC 1663
Query 1703 TTAAATTTGTG 1713
|| ||||||||
Sbjct 1664 TTTAATTTGTG 1674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66543658015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5