BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24310.1
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472914 jgi|Araly1|472914|fgenesh2_kg.1__2868__AT1G24310.1 2294 0.0
Ahg942385 jgi|Araly1|942385|scaffold_602929.1 1192 0.0
> Ahg472914 jgi|Araly1|472914|fgenesh2_kg.1__2868__AT1G24310.1
Length=1461
Score = 2294 bits (1242), Expect = 0.0
Identities = 1396/1469 (95%), Gaps = 15/1469 (1%)
Strand=Plus/Plus
Query 20 CCGAGAATTCCGTCGAACACTTGAGCTGCGTTTTAAAGTTCTCCAAATGGCGCCTTTTGC 79
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 CCGAGAATTCCGTCGAACGCTTGAGCTGCGTTTTAAAGTTCTCCGAATGGCGCCTTTTGC 60
Query 80 CT-ACTAAAAAACCTTTACCTTCTTCACAGAGATCTAACCTCTCCTTTTCCCAATGTTCG 138
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTAAC-AAAAAACCTTTACCTTCTTCACAGAGATCTAACCTCTCCTTTTCCCAATGTTCG 119
Query 139 GCACTCCGTCTTCATCGCCGTCATTCGGCACTCCGTCATCCACACCCGCCTTTGGCACAT 198
|||||||||| || |||||||| |||||||||||||| ||||||||||||||||| || |
Sbjct 120 GCACTCCGTCATCCTCGCCGTCCTTCGGCACTCCGTCGTCCACACCCGCCTTTGGTACGT 179
Query 199 CTTCTCCGGCGTTCGGTACACCGTCAGCTACGCCTGCGTTCGGTACGCCATCGAATCCTT 258
|||| ||||||||||||||||| ||||| |||||||||||||| ||||| ||| |||||
Sbjct 180 CTTCACCGGCGTTCGGTACACCATCAGCCACGCCTGCGTTCGGAACGCCGTCGGTTCCTT 239
Query 259 CCTTCTCCTCCGGCGGATTTGGCTCTTCACTCTTCTCGT-CTCCCTTCTCATCTcaacag 317
||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||
Sbjct 240 CCTTCTCCTCCGGCGGATTTGGCTCCTCACTCTTCTC-TACTCCCTTCTCATCTCAACAG 298
Query 318 ccacagcaacaacaacaaca--a-caacagcagcagcagcCGAGTTCACTGTTTCAGCAA 374
|||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 299 CCACAGCAACAACAGCAACAGCAGCAACAACAGCAGCAGCCGAGTTCACTGTTTCAGCAA 358
Query 375 CAGCCATCTTCTAATTTTGGTTTTCAGTCACCATTCAACAACACCGCTCAGCAGCAGCAG 434
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 359 CAGCCATCTTCTAGTTTTGGTTTTCAGTCACCATTCAACAACACCGCT------CAGCAG 412
Query 435 CAAACGCC-TTTCCCAAATGCTCAATTGACTACTCAGATGGCTCCCGTTGCTCCAATTCC 493
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CAAACGCCGTTT-CCAAATGCTCAATTGACTACTCAGATGGCTCCCGTTGCTCCAATTCC 471
Query 494 TTACTCTCTCGCCGATCGTGATGTCCAGGCTATCATTGAAGCTTATAAGGAAGATCCAAC 553
||||||||||||||||||||| ||||||| |||||||||||| |||||||||| ||| ||
Sbjct 472 TTACTCTCTCGCCGATCGTGACGTCCAGGTTATCATTGAAGCGTATAAGGAAGGTCCGAC 531
Query 554 GAATCCCAAGTATGCTTTTCAGCATCTTTTATTCAGTGTGACTGAACCACAGTACCGGGT 613
|||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 532 GAATCCCAAGTATGCTTTTCAGCATCTTTTGTTTAGCGTGACTGAACCACAGTACCGGGT 591
Query 614 GAAGCCTGCAGCTGTATCAGATATAATGTGGGCAGAGGCCATGAGCAAACTTGAAGGTAT 673
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 592 GAAGCCTGCAGCTGTTTCAGATATAATGTGGGCAGAGGCTATGAGCAAACTTGAAGGCAT 651
Query 674 GGATTCAACAGAAAGAGAGCGCCTTTGGCCTCAGCTTGTGCAAGGTTTCAAAGATCTCTC 733
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 652 GGATTCAACAGAAAGAGAGCGCCTGTGGCCTCAGCTTGTGCAAGGTTTCAAAGATCTTTC 711
Query 734 TCAGCGCCTTAAGCTTCAAGATGAAGTTCTCGTCTCAGATAGGGATAGAATAAAAACGAC 793
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 712 TCAGCGCCTTAAGCTTCAAGATGAAGTTCTCGCCTCAGATAGGGATAGAATAAAAACGAC 771
Query 794 TCAGAGCAATGTTAAAATGCTTCAGAGACATTTGCAAGCATCAACCTTCCCATCTATTGA 853
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 772 TCAGAGCAATGTTAAAATGCTCCAGAGACATTTGCAAGCATCAACCTTTCCATCTATTGA 831
Query 854 AAGGTTGAGACAGAAGGAGCAGAGTCTTCAAAGACGCATGTTGAGGGTGATGAGGATTAT 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 832 AAGGTTGAGACAGAAGGAGCAGAGTCTTCAAAGACGCATGTTGAGGGTGATGAGGATAAT 891
Query 914 AGAAGGCTTAGAAGGGAAGGGTTTCCGGTTACCCTTGACGAAAGGAGAGGCCGAACTGTC 973
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 892 AGAGGGCTTAGAAGGGAAGGGTTTCCGGTTACCCTTGACAAAAGGAGAGGCCGAACTGTC 951
Query 974 TGAGAAGTTAACTGCAATAACAAGACAGGTGAAAGGTCCTGGAGCAGAGCTTTCTAGGAG 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TGAGAAGTTAACTGCAATAACAAGACAGGTGAAAGGTCCTGGAGCAGAGCTTTCTAGGAG 1011
Query 1034 GGTGCAAAGTCTGCAGACGATATCTCGTGCTCAAGCAAATTCAATTGCTGCTGGTAGTTC 1093
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 GGTGCAAAGTCTGCAGACAATATCTCGTGCTCAAGCAAATTCAATTGCTGCTGGTAGTTC 1071
Query 1094 CCTTTATCTCCCTGGGTCAACTAAAATAGACGAGCAGAGCTTGATAGATATGCAGGAGGT 1153
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1072 CCTTTATCTCCCTGGGTCAACTAAAATAGATGAGCAGAGCTTGATAGATATGCAGGAGGT 1131
Query 1154 ATTGCAACAAGAGACAGAAGCCATAGGAAGACTTGGGAACGTATTGAAGCGAGACATGAG 1213
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1132 ATTGCAACAGGAGACAGAAGCCATAGGAAGGCTTGGGAACGTATTGAAGCGAGACATGAG 1191
Query 1214 GGATATGGAAATCATGGTGGCTGAAGATACAGAAATGGCACTAGACTCATAGAAGCGAAT 1273
|||||||||||||||||||||||||||||||||||||| | ||| ||||||||| | ||
Sbjct 1192 AGATATGGAAATCATGGTGGCTGAAGATACAGAAATGGCTCAAGATTCATAGAAGTGGAT 1251
Query 1274 CTGCAATTACTCTAGTTTCGAAGTTCTCTTATCCTTTACCATCTCCTGGATGCGCACATT 1333
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||
Sbjct 1252 CTGCAATTACTCTAGTTTCGAAGTTCTCCTATCCTTTACTATCTCCTGGATGCGCACGTT 1311
Query 1334 GTTATGCTCAGAAACGACAAGGCTAGCTTTGGACTTTAACATGTACGTAGTAGCTGAGCT 1393
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1312 GTTATGCTCAGAAACGACAAGGCTAGCTTTGGACTTTAACGTGTACGTAGTAGCTGAGCT 1371
Query 1394 ATAAATCTTGATGTATTGTGATATAGTTTTCATTAAAGCCTTTGAAAGAGACTGCCTTAT 1453
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1372 ATAAATCTTGATGTATTGTGATATAATTTTCATTAAAGCCTTTGGAAGAGACTGCCTTAT 1431
Query 1454 TTTGTTCACAAACACGAGCGGATAGTTTT 1482
||||||| |||||||| || ||||| |||
Sbjct 1432 TTTGTTCTCAAACACGGGCAGATAGGTTT 1460
> Ahg942385 jgi|Araly1|942385|scaffold_602929.1
Length=832
Score = 1192 bits (645), Expect = 0.0
Identities = 743/788 (94%), Gaps = 15/788 (2%)
Strand=Plus/Plus
Query 112 TCTAACCTCTCCTTTTCCCAATGTTCGGCACTCCGTCTTCATCGCCGTCATTCGGCACTC 171
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1 TCTAACCTCTCCTTTTCCCAATGTTCGGCACTCCGTCATCCTCGCCGTCATTCGGCACTC 60
Query 172 CGTCATCCACACCCGCCTTTGGCACATCTTCTCCGGCGTTCGGTACACCGTCAGCTACGC 231
|||| ||||||||||||||||| || ||||| ||||||||||||||||| ||||| ||||
Sbjct 61 CGTCGTCCACACCCGCCTTTGGTACGTCTTCACCGGCGTTCGGTACACCATCAGCCACGC 120
Query 232 CTGCGTTCGGTACGCCATCGAATCCTTCCTTCTCCTCCGGCGGATTTGGCTCTTCACTCT 291
|||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||
Sbjct 121 CTGCGTTCGGTACGCCGTCGGTTCCTTCCTTCTCCTCCGGCGGATTTGGCTCCTCACTCT 180
Query 292 TCTCGTCTCCCTTCTCATCTcaacagccacagcaacaacaacaacaacaacagcagcagc 351
||||| ||||||||||||| |||||||||||| |||||||| | | | |||||||
Sbjct 181 TCTCGACTCCCTTCTCATCGCAACAGCCACAG------CAACAACAGC-A-A-CAGCAGC 231
Query 352 agcCGAGTTCACTGTTTCAGCAACAGCCATCTTCTAATTTTGGTTTTCAGTCACCATTCA 411
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 232 AGCCGAGTTCACTGTTTCAGCAACAGCCATCTTCTAGTTTTGGTTTTCAGTCACCATTCA 291
Query 412 ACAACACCGCTCAGCAGCAGCAGCAAACGCCTTTCCCAAATGCTCAATTGACTACTCAGA 471
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 292 ACAACACCGCT------CAGCAGCAAACGCCGTTCCCAAATGCTCAATTGACTACTCAGA 345
Query 472 TGGCTCCCGTTGCTCCAATTCCTTACTCTCTCGCCGATCGTGATGTCCAGGCTATCATTG 531
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 346 TGGCTCCCGTTGCTCCAATTCCTTACTCTCTCGCCGATCGTGACGTCCAGGCCATCATTG 405
Query 532 AAGCTTATAAGGAAGATCCAACGAATCCCAAGTATGCTTTTCAGCATCTTTTATTCAGTG 591
||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 406 AAGCTTATAAGGAAGATCCGACGAATCCCAAGTATGCTTTTCAGCATCTTTTGTTTAGTG 465
Query 592 TGACTGAACCACAGTACCGGGTGAAGCCTGCAGCTGTATCAGATATAATGTGGGCAGAGG 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 TGACTGAACCACAGTACCGGGTGAAGCCTGCAGCTGTATCAGATATAATGTGGGCAGAGG 525
Query 652 CCATGAGCAAACTTGAAGGTATGGATTCAACAGAAAGAGAGCGCCTTTGGCCTCAGCTTG 711
| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 526 CTATGAGCAAACTTGAAGGCATGGATTCAACAGAAAGAGAGCGCCTGTGGCCTCAGCTTG 585
Query 712 TGCAAGGTTTCAAAGATCTCTCTCAGCGCCTTAAGCTTCAAGATGAAGTTCTCGTCTCAG 771
|||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 586 TGCAAGGTTTTAAAGATCTTTCTCAGCGCCTTAAGCTTCAAGATGAAGTTCTCGCCTCAG 645
Query 772 ATAGGGATAGAATAAAAACGACTCAGAGCAATGTTAAAATGCTTCAGAGACATTTGCAAG 831
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 646 ATAGGGATAGAATAAAAACGACTCAGAGCAATGTTAAAATGCTCCAGAGACATTTGCAAG 705
Query 832 CATCAACCTTCCCATCTATTGAAAGGTTGAGACAGAAGGAGCAGAGTCTTCAAAGACGCA 891
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 CATCAACCTTTCCATCTATTGAAAGGTTGAGACAGAAGGAGCAGAGTCTTCAAAGACGCA 765
Query 892 TGTTGAGG 899
||||||||
Sbjct 766 TGTTGAGG 773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5