BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24320.1
Length=2528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921754 jgi|Araly1|921754|scaffold_103035.1 2289 0.0
Ahg475845 jgi|Araly1|475845|fgenesh2_kg.2__975__AT1G67490.1 1816 0.0
> Ahg921754 jgi|Araly1|921754|scaffold_103035.1
Length=2390
Score = 2289 bits (1239), Expect = 0.0
Identities = 1416/1503 (94%), Gaps = 6/1503 (0%)
Strand=Plus/Plus
Query 936 ATTTAATGCTAAGTTCAATGAATGCTTCAACCTTTCTGACAAGCTTGATCCTGAAACTTT 995
|||| |||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 888 ATTTGATGCAAAGTTCAAGGAATGCTTCAACCTTTCTGAAAAGCTTGATCCTGAAACTTT 947
Query 996 GGTGGTTGGTAAAGCAGCAATCGGGAACATGCTTGGAGGCATTGGTTACTTCTATGGTCA 1055
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 948 CGTGGTTGGTAAAGCTGCAATTGGGAACATGCTTGGAGGCATTGGTTACTTCTATGGCCA 1007
Query 1056 ATCAAAGATTCATTTTCCTAAAAGTCCTCTGGCTAAAAGTGAGGATGATTTCTTGCTATA 1115
|||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1008 ATCAAAAATTCATGTTCCTAAAAGTACTCTGGCTAAAAGTGAGGATGATTTCTTGCTATA 1067
Query 1116 TTGGCCAGCTGAGCTATACACAGCAGTTCCAAGCCGGCCCCG-GTTTCCTAGGGGATTTT 1174
|||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||
Sbjct 1068 TTGGCCAGCTGAGCTATACACAGCAGTTCCAAGCCGGCCC-GTGTTTCCTAGAGGATTTT 1126
Query 1175 TGTGGGATGAAGGCTTCCATCAATTGTTGATCTGGCGTTGGGATGTCCATATAACCTTGG 1234
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1127 TGTGGGATGAAGGCTTCCATCAATTGTTGATCTGGCGCTGGGATGTCCATATAACCTTAG 1186
Query 1235 AAATAGTTGGAAACTGGTTAGATTTAATGAATATAGATGGATGGATTCCACGTGAGCAAG 1294
|||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1187 AAATCGTTGGAAACTGGTTAGATCTAATGAATATAGATGGATGGATTCCACGGGAGCAAA 1246
Query 1295 TTTTGGGAGCTGAAGCTCTCAGTAAGATTCCAAAGCAGTACGTTGTTCAGTTCCCAAGTA 1354
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1247 TTTTGGGAGCTGAAGCTCTTAGTAAGATTCCAAAGCAGTACGTTGCTCAGTTCCCAAGTA 1306
Query 1355 ATGGCAATCCACCTACACTACTTTTGGTCATACGCGATTTGATCAATGGGATACGGACAG 1414
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||
Sbjct 1307 ATGGCAATCCACCTACACTACTTTTGGTGATACGCGATCTGATCAATGGGATACAGACAG 1366
Query 1415 AGAAATTCAACGAGGCAGACAGAGATAAAATATTGTCATTCCTTGACCGGGCTTTTGTAC 1474
||||||| | | ||||||| |||||| || | |||||||| |||||||||||||||||||
Sbjct 1367 AGAAATTTAGCAAGGCAGAAAGAGATGAAGTCTTGTCATTTCTTGACCGGGCTTTTGTAC 1426
Query 1475 GGCTAGATGCATGGTTTAAATGGTTCAATACTTCTCAGATAGGTAAGGAAAAGGGAAGTT 1534
||||||||||||||||||| |||||||||||||| || ||||| ||||| ||||||||||
Sbjct 1427 GGCTAGATGCATGGTTTAAGTGGTTCAATACTTCCCAAATAGGAAAGGAGAAGGGAAGTT 1486
Query 1535 ATTATTGGCATGGCAGAGACAATATAACAAATAGGGAACTAAACCCTCAGTCTCTTTCCT 1594
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1487 ACTATTGGCATGGCAGAGACAATATAACAAATAAGGAACTAAACCCTCAGTCTCTTTCCT 1546
Query 1595 CGGGTTTGGATGATTATCCTCGGGCTTCACATCCAAATGAAGATGAGAGGCATGTTGACC 1654
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1547 CGGGTTTTGATGATTATCCTCGGGCTTCACATCCAAGTGAAGATGAGAGGCATGTTGACC 1606
Query 1655 TCAGATGCTGGATGTATCTTGCAGCAGATTCCATGAACTCCATCCAAGAGTTTATGGGGA 1714
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1607 TCAGATGTTGGATGTATCTTGCAGCAGATTGTATGAACTCCATCCAAGAGTTTATGGGGA 1666
Query 1715 AAAATGACATACTTGTGACAGAGGATTACAGCTCAATTGCCAAGCTGCTTTCAGATTTCA 1774
|||| |||| |||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 AAAAAGACAGACTTGTAACGGAGGATTACAGCTCAATTGCCAAGCTGCTTTCAGATTTCA 1726
Query 1775 CTCTTCTGAATCAGATGCACTATGACAAGGACCATGGGGCTTACCTTGACTTTGGTAATC 1834
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1727 ATCTTCTGAATCAGATGCACTATGACCAGGACCATGGGGCTTACCTTGACTTTGGTAATC 1786
Query 1835 ATACAGAAGAAGTTCGGTTAGTCTGGAAAGAGGTAATTCACGAA-GATGGACATTTATCT 1893
|||||||||||||||||||| |||||||||| |||||| || || ||||||| |||||||
Sbjct 1787 ATACAGAAGAAGTTCGGTTAATCTGGAAAGAAGTAATT-ACAAAAGATGGACGTTTATCT 1845
Query 1894 CGAGAGCTTGTAAGGGAGACATATGGGAAGCCAGAGCTAAGATTGGTTCCTCATATCGGT 1953
|||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||
Sbjct 1846 CGAGAGCTTGTAAGGGAGACATTTGGGAAGCCAGAGCTAAGATTGGTTCCTCACATTGGT 1905
Query 1954 TACGTCAGCTTCTTTCCCTTCATGTTTAGAATCATCCCAGCTGATTCTTCGATCCTCGAC 2013
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| ||
Sbjct 1906 TACGTCAGCTTCTTTCCCTTCATGTTTAGAATCATCCCAGCGGATTCTTCAATACTCAAC 1965
Query 2014 AAACAGCTCGATCTCATTTCAAACGGGAACATCGTATGGAGTGACTATGGACTACTTTCA 2073
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1966 AAACAGCTCGATCTCATTTCAAACAGGAACATCGTATGGAGTGACTATGGACTACTTTCA 2025
Query 2074 CTTGCCAAAACTAGTTCTTTGTACATGAAGTATAACAGTGAGCATCAAGCACCATACTGG 2133
||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||| |||
Sbjct 2026 CTTGCAAAAACTAGTTCTTTGTACATGAAGTATAACACTGAGCATGAAGCACCATATTGG 2085
Query 2134 AGAGGTGCTATATGGATGAACATGAACTACATGATTCTTTCTTCCCTGCACCATTACTCT 2193
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2086 AGAGGTGCTATATGGATGAATATGAACTACATGATTCTTTCTTCCCTGCACCATTACTCT 2145
Query 2194 ACAGTGGATGGACCGTACAACAGCAAAGCACGAACGATTTACGAGGAACTAAGGAGCAAT 2253
|||||||||||||| ||| |||||| ||| |||| || |||||||||||||||||||||
Sbjct 2146 ACAGTGGATGGACCATACCGCAGCAAGGCAAGAACAATATACGAGGAACTAAGGAGCAAT 2205
Query 2254 CTAATAAGGAACGTGGTTAGAAACTATGACCAGACTGGA-ATTATCTGGGAACACTACGA 2312
||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 2206 CTAATAAGGAACGTGATTAGAAACTATGACCAGACTGGATAT-ATCTGGGAACACTATGA 2264
Query 2313 TCAAACAAAAGGAACTGGAGAAGGTGCACGTGTCTTCACCGGTTGGTCTGCACTTATCCT 2372
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2265 TCAAACAAAAGGAACTGGAGAAGGTGCACGTGTCTTCACCGGCTGGTCTGCACTTATCCT 2324
Query 2373 CTTAATCATGTCCGAAGAATACCCTCTATTTTAAAAACCATTATGATTACCAACATTTGT 2432
||||||||||||||||||||||| ||||||| ||||||| || |||||||||| ||||||
Sbjct 2325 CTTAATCATGTCCGAAGAATACCTTCTATTTAAAAAACCGTTTTGATTACCAATATTTGT 2384
Query 2433 AAC 2435
|||
Sbjct 2385 AAC 2387
Score = 1286 bits (696), Expect = 0.0
Identities = 826/888 (93%), Gaps = 11/888 (1%)
Strand=Plus/Plus
Query 17 TTTCTCAAATCTATACTCA--GATGACCGGATTAAGCCCATCTGGTGATATCAAACCACT 74
|||||| |||||||||| | |||||||||||||| |||||||||||||||||| |||||
Sbjct 1 TTTCTC-AATCTATACTTAGTGATGACCGGATTAATCCCATCTGGTGATATCAATCCACT 59
Query 75 TTTGGATGATGAATCCCAGAGACCTCGTGTTATCACTCCTTTTCCTTCTCCTAAACTCAC 134
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 60 TTTGGATGATGAATCCCAGAGACCTCGTGTTATTACTCCTTTTCCTTCTCCTAAACTCAC 119
Query 135 CGACTTGTCCATGTTTCAAGGTGAGCACAAGGAAAGCTTGTATTGGGGAACTTATCGTCC 194
|||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 120 CGACTTGTCCATGTTTCAAGGTGATCACAAGGAGAGCATGTATTGGGGAACTTATCGTCC 179
Query 195 TCAGATGTATTTTGGAGTTCGAGCCAGAACTCCCAAGTCCCTTGTTGCTGGCTTGATGTG 254
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 TCAGGTGTATTTTGGAGTTCGAGCCAGAACTCCTAAGTCCCTTGTTGCTGGCTTGATGTG 239
Query 255 GCTCGTTATGAAAGATGGAAAGCCTGTTATGAGACATTTCTGTGAAAACTCTAACGATCT 314
|||||||||||||||||| |||| |||||||| |||||||||||||||||| ||||||
Sbjct 240 GCTCGTTATGAAAGATGGGAAGCAAGTTATGAGGCATTTCTGTGAAAACTCTGCCGATCT 299
Query 315 TAAGTCATTTGGTTGGAAAGAACACAATGGAAGAGATTTTGGGCGACAAGAGCTGTTTGA 374
|||||| ||||| |||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct 300 TAAGTCGTTTGGCTGGAGAGAACACAATGGAAGAGATTTTGGACGGCAAGAGCTGTTTGA 359
Query 375 ACAAAATATGGTTTTGGAGACAAGTTTTGTCAAGTCTGAGGAAGGCAGCCTTGGTTATGG 434
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 360 ACAAGATATGGTTTTGGAGACAAGTTTTGTCAAGTCTAAGGAAGGCAGCCTTGGTTATGG 419
Query 435 AGGAGATTGGTCTATTAGAATCAATGTTCAAAATATGTTGAATGATGATGAAGTAAAGAG 494
|||||||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 AGGAGATTGGTCGATTCGTATCAATGTTAAAAATATGTTGAATGATGATGAAGTAAAGAG 479
Query 495 AAGTACACATCTCTTCTTCTATCTAGCTGATGAAGGTTGCAATGGTGTGAATTTAGGCAA 554
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 480 AAGTGCACATCTCTTCTTCTATCTAGCTGATGAAGGTGGCAATGGTGTGAATTTAGGCAA 539
Query 555 AGATGTGTTAAGGCTTAAAGAGAGTTCTGTCTTAGCTTCAGGTTCACGTCAAGATGTAGG 614
|||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 540 AGATGTGTTAGGGCTTAAAGAGAGTTCTGTCCTAGCTTCAGGCTCACGTCAAGATGTAGG 599
Query 615 AAACTGGCAGATGCACTTAAAATCACAGAATCATCTTGAAACACATTATTGTGGATTCAA 674
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 600 AAACTGGCAGATGCACTTAAAATCACAGAATCATCTTGAAACACATTATTGCGGTTTCAA 659
Query 675 GACGCCTGACATTGTCAATCTCTCTGGTCTTGTTCAGCAAAATCTCACTGC----T--CA 728
||||||||||||||||||||||||| ||||||||||||||||||||||| | ||
Sbjct 660 GACGCCTGACATTGTCAATCTCTCTAACCTTGTTCAGCAAAATCTCACTGCACAGTTTCA 719
Query 729 GGAAGAGAAGTCTGGACTACTTCAGCTCTCTGACTCATCAGAGGACTCTTCCAACATTTA 788
||||| |||||||||||||||||||||||||||| | || || || ||||||||||||||
Sbjct 720 GGAAGGGAAGTCTGGACTACTTCAGCTCTCTGACACGTCGGAAGATTCTTCCAACATTTA 779
Query 789 TGTTTTTCAGATTTCCACGACGAACCAATCAACTATAGACATTGCCTTTGTCTCTGGAAT 848
||||||||||||||||||||||| |||||| || ||||| ||||| ||||||||||| |
Sbjct 780 TGTTTTTCAGATTTCCACGACGACCCAATCTACCATAGATATTGCATTTGTCTCTGGGA- 838
Query 849 AAA-AGAAGAAACGTCCAACATGGAAAATCGTATAATGAGTCTTACAG 895
||| ||||||| | |||||||||||||| |||||||||||||||||||
Sbjct 839 AAAGAGAAGAAGCTTCCAACATGGAAAAGCGTATAATGAGTCTTACAG 886
> Ahg475845 jgi|Araly1|475845|fgenesh2_kg.2__975__AT1G67490.1
Length=2657
Score = 1816 bits (983), Expect = 0.0
Identities = 1925/2370 (81%), Gaps = 104/2370 (4%)
Strand=Plus/Plus
Query 76 TTGGATGATGAATC-CCAGAGACCTCGTGTTATCACTCCTTTTCCTTCTCCTAAACTCAC 134
||| ||||||| || | | || ||| | |||||||||||||||||| |||| |||||||
Sbjct 241 TTGTATGATGAGTCTCAAAAG-CCTAGGGTTATCACTCCTTTTCCTGCTCCCAAACTCA- 298
Query 135 CG-ACTTGTCCATGTTTCAAGGTGAGCACAAGGAAAGCTTGTATTGGGGAACTTATCGTC 193
| | ||||| |||||||| || |||||||| || |||||||| ||||||||||||||||
Sbjct 299 TGAATTTGTCAATGTTTCAGGGAGAGCACAAAGAGAGCTTGTACTGGGGAACTTATCGTC 358
Query 194 CTCA-GATGTATTTTGGAGTTCGAGCCAGAACTCCCA-AGTCCCTT-GTTGCTGGCTTGA 250
|||| | | |||||||||||||| || |||||| ||| || | || || ||||||||||
Sbjct 359 CTCATG-TTTATTTTGGAGTTCGTGCGAGAACT-CCATTGT-CTTTGGTAGCTGGCTTGA 415
Query 251 TGTGGCTCGTTATGAAAGATGGA-AAGCCTGTTATGAGACATTTCTGTGAAAACTCTAAC 309
||||||| | | | ||||| || | | ||||||| | |||||||||||||||||| |
Sbjct 416 TGTGGCTTGGTGTCAAAGA-CGAGATGTATGTTATGCGGCATTTCTGTGAAAACTCTGAT 474
Query 310 GATCTTAAGT-CATTTGGTTGGAAAGAACACAATGGAAGAGATTTTGGGCGACAAGAGCT 368
||| |||||| ||||||| |||| |||||| |||||| | ||||||||||| ||||||||
Sbjct 475 GAT-TTAAGTACATTTGGATGGAGAGAACATAATGGACGGGATTTTGGGCGGCAAGAGCT 533
Query 369 GTTTGAACAA-AATATGGTTTTGGAGACAAGTTTTGTCAAGTCTG-AGGAAGGCAGCCTT 426
| ||| | || ||||||| || ||||| |||||||||||||| | ||| || | |||||
Sbjct 534 GGTTG-AGAACGATATGGTATTAGAGACGAGTTTTGTCAAGTC-GAAGGGAGACGGCCTT 591
Query 427 GGTTATGGAGGAGATTGGTCTA-TTAGAATCAATGTTCAAAAT--A-TGTTGAATGATGA 482
|||||||| || |||||| | | || | || |||| ||||| | ||||||||||||
Sbjct 592 GGTTATGGTGGGGATTGGGC-AGTTCGGATTGATGTAAAAAATAAAGGGTTGAATGATGA 650
Query 483 TGAAGTAAAGAGAAGTACACATCTCTTCTTCTATCTAGCTGATGAAGGTTGCAATGGTGT 542
| || ||||||||| | ||||||||||| ||| |||||||||||||| |||||| | |
Sbjct 651 T---GTGAAGAGAAGTGCCCATCTCTTCTTTTATTTAGCTGATGAAGGTGGCAATGTTTT 707
Query 543 GAATTTAGGCAAAGATGTGTTAAGG--CTTAAAGAGAGTTCTGTCTTAGCTTCAGGTTCA 600
||||||||| ||||| || || || ||| ||| || || | | ||| ||||||
Sbjct 708 AAATTTAGGCCAAGAT-AATT-TGGATTTTCAAGGGAGCTCACTCCTGGTTTCGGGTTCA 765
Query 601 CGTCAAGATGTAGGAAACTGGCAGATGCACTTAAAATCACAGAATCATCTTGAAACACAT 660
||| ||||||||||| | |||||||| |||||||||||||||||||| || || ||||||
Sbjct 766 CGTGAAGATGTAGGAGATTGGCAGATACACTTAAAATCACAGAATCAGCTCGAGACACAT 825
Query 661 TATTGTGGATTCAAGACGCCTGACAT-TGTCAATCTCTCTGGTCTTGTTCAGCAAAATCT 719
|||| || |||||||||||| |||| | | ||||| |||| ||| ||||||||||||||
Sbjct 826 TATTCCGGTTTCAAGACGCCTCACATATAT-AATCTGTCTGATCTAGTTCAGCAAAATCT 884
Query 720 CACTGCT-CAGG-AAGAGAAGTCTGGACTACTTCAGCTCTCTGACTCATCAGAGGACTCT 777
| || || |||| ||| ||||| ||||| |||||||||||||||| |||||||||| |||
Sbjct 885 CGCT-CTGCAGGCAAG-GAAGTTTGGACGACTTCAGCTCTCTGACACATCAGAGGATTCT 942
Query 778 TCCAACATTTATGTTTTTCAGATTTCCACGACG-AACCAATCAACTATAGACATTGCCTT 836
|| |||||||| | ||||||||||| || | || || || || || || ||||
Sbjct 943 TCTAACATTTACATCTTTCAGATTTCTGGGAGGCTGCC-ATTTACAATTGATATACCCTT 1001
Query 837 TGTCTCTGGAATAAAAGAAGAAACG-TCCAACATGGAAAATC-GTATAATGAGTCTTACA 894
||||| || || |||| ||||| | || ||| ||||||| | || ||| ||||| |||
Sbjct 1002 CGTCTCCGGGATCAAAGGAGAAA-GTTCAAACGTGGAAAAGCGGT-TAACAAGTCTCACA 1059
Query 895 GGTTTGCCACTCTCTAG-TCTACTTGAAGAGAAACATATAGCA-TTTAATGCTAAGTTCA 952
|||| |||||||||| | ||||||| || |||||| || || | ||| || | |||||
Sbjct 1060 GGTTCGCCACTCTCT-GATCTACTTAAAAAGAAACGTAAAG-AGTTTGATACAAAGTTTG 1117
Query 953 ATGAATGCTTCAACCTTTCTGACAAGCTTGATCCTGAAACTTTGGTGGTTGGTAAAG-CA 1011
| |||||||||||||||||||| |||| |||| | ||||| |||| |||||| ||| |
Sbjct 1118 AGGAATGCTTCAACCTTTCTGAAAAGCATGATTCAGAAACATTGGGGGTTGG-CAAGACT 1176
Query 1012 GCAATCGGGAACATGCTTGGAGGCATTGGTTACTTCTATGGTCAATCAAAGATTCATTTT 1071
||||| | ||||||||||| |||||||||||||||||||| |||||||| | | ||
Sbjct 1177 GCAATTGCAAACATGCTTGGTGGCATTGGTTACTTCTATGGCCAATCAAA-A---A--TT 1230
Query 1072 CCTAAAAGTCCTCTGGCTAAAAGTGAGGATGATTTCTTGCTATATTGGCCAGCTGAGCTA 1131
| | || || || || | | |||||||||| ||||||||| |||||||
Sbjct 1231 -C-ATAA----TC-GG----AA-T----A--ATTTCTTGCTGTATTGGCCAACTGAGCTG 1272
Query 1132 TACACAGCAGTTCCAAGCCGGCCCCGGTTTCCTAGGGGATTTTTGTGGGATGAAGGCTTC 1191
|||||||| ||||||||||||||| ||||||||||| ||||||||||| ||||| |||
Sbjct 1273 TACACAGCTGTTCCAAGCCGGCCCTTTTTTCCTAGGGGTTTTTTGTGGGACGAAGGTTTC 1332
Query 1192 CATCAATTGTTGATCTGGCGTTGGGATGTCCATATAACCTTGGAA-ATAGTTGGAAACTG 1250
||||||||||| |||||||| |||||| | | ||||||||| ||| || ||||| ||||
Sbjct 1333 CATCAATTGTTAATCTGGCGCTGGGATTTTCGTATAACCTT-GAATATCGTTGGGCACTG 1391
Query 1251 GTTAGATTTAATGAATATAGATGGATGGATTCCACGTGAGCAAGTTTTGGGAGCTGAAGC 1310
|||||| || | || ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1392 GTTAGACCTATTAAACATAGATGGATGGATTCCACGTGAGCAAATTTTGGGTGCTGAAGC 1451
Query 1311 TCTCAGTAAGATTCCAAAGCAGTACGTTGTTCAGTTCCCAAGTAATGGCAATCCACCTAC 1370
||| |||||| ||||| || | | ||| ||||| | ||| ||||||||||||||||| ||
Sbjct 1452 TCTGAGTAAGGTTCCAGAGGAATTCGTAGTTCAATACCCGAGTAATGGCAATCCACCAAC 1511
Query 1371 ACTACTTTTGGTCATACGCGATTTGATCA-ATGGGATACGGACAGAGAAA-TTCAACG-A 1427
||| ||||||| ||||||||| |||| | ||| ||| ||| || ||| || | | |
Sbjct 1512 ACTTTTTTTGGTGATACGCGATCTGAT-AGATGCTATAAGGATGGA-AAAGTTTATTGCA 1569
Query 1428 GGCAGACAGAGATAAAATATTGTCATTCCTTGACCGGGCTTTTGTACGGCTAGATGCATG 1487
|||| || ||| || |||||||||||||||| ||||||| ||||||| ||||||| ||
Sbjct 1570 -TCAGAAAGGGATGAAGTATTGTCATTCCTTGAGCGGGCTTCTGTACGGTTAGATGCTTG 1628
Query 1488 GTTTAAATGGTTCAATACTTCTCAGATAGGTAAGGAAAAGGGAAGTTA-TTATTGGCATG 1546
|||| | ||||| |||||||| |||| ||| ||||| | ||||| || || ||||||||
Sbjct 1629 GTTTCAGTGGTTTAATACTTCCCAGAAAGGCAAGGAGATCGGAAGCTACTT-TTGGCATG 1687
Query 1547 GCAGAGACAATATAACAAATAGGGAACTAAACCCTCAGTCTCTTTCCTCGGGTTTGGATG 1606
|||||||||| ||||||| ||| ||||| |||||| || | ||||| ||||| ||||||
Sbjct 1688 GCAGAGACAACATAACAACTAGAGAACTTAACCCTAAGACGCTTTCGTCGGGGCTGGATG 1747
Query 1607 ATTATCCTCGGGCTTCACATCCAAATGAAGATGAGAGGCATGTTGACCTCAGATGCTGGA 1666
||||||| ||||||||||| |||| |||||||||||| |||||||| || ||||||||||
Sbjct 1748 ATTATCCCCGGGCTTCACACCCAAGTGAAGATGAGAGACATGTTGATCTTAGATGCTGGA 1807
Query 1667 TGTATCTTGCAGCAGATTCCATGAACTCCATCCA-AGAG-TTTATGGGGAAAAATGACAT 1724
|||| ||||| ||||||| |||| | ||||| || |||| ||| | || ||||| || |
Sbjct 1808 TGTACCTTGCTGCAGATTGCATGCATTCCAT-CACAGAGCTTT-TAGGAAAAAAAGATAA 1865
Query 1725 ACTTGTGACA-GAGGATTACAGCTCAATTGCCAAGCTGCTTTCAGATTTCACTCTTCTGA 1783
|||| | | | |||||||||| |||| |||||||||||||||| |||||| ||||||||
Sbjct 1866 ACTT-TCAAAGGAGGATTACAATTCAACTGCCAAGCTGCTTTCAAATTTCAATCTTCTGA 1924
Query 1784 ATCAGATGCACTATGACAAG-GACCATGGGGCTTACCTTGACTTTGGTAATCATACAGAA 1842
||||||||||||| || || ||||||||||||||| |||||||||||||||||||||||
Sbjct 1925 ATCAGATGCACTACGA-TAGTGACCATGGGGCTTACTTTGACTTTGGTAATCATACAGAA 1983
Query 1843 GAAGTTCGGTTAG-TCTGGAAAGAGGTAATTCACGAAGATGGACATTTATCTCGAGAGCT 1901
||||| ||| | | ||||||||||||||||| ||| |||| || ||||||||| ||||
Sbjct 1984 AAAGTTAAGTT-GATATGGAAAGAGGTAATTCAAGAAAATGGTCAATTATCTCGACAGCT 2042
Query 1902 TGTAAGGGAGACATATGGGAAGCCAGAGCTAAGATTGGTTCCTCATATCGGTTACGTCAG 1961
| ||||| |||| | |||||||||| |||||| | |||||||||| | ||||| |||||
Sbjct 2043 TTTAAGGAAGACTTTTGGGAAGCCAAAGCTAAAAATGGTTCCTCACGTGGGTTATGTCAG 2102
Query 1962 CTTCTTTCCCTTCATGTTTAGAATCATCCCAGCTGATTCTTCGATCCTCGACAAACAGCT 2021
||||||||||||||||| ||||||||||||| |||||||| | |||||||| ||||||||
Sbjct 2103 CTTCTTTCCCTTCATGTCTAGAATCATCCCACCTGATTCTCCAATCCTCGAGAAACAGCT 2162
Query 2022 CGATCTCATTTCAAACGGGAACATCGTATGGAGTGACTATGGACTACTTTCACTTGCCAA 2081
||| |||||||||| ||| |||| ||||||||||||| |||||| |||| ||||||||
Sbjct 2163 TGATATCATTTCAAATAGGAGCATCTTATGGAGTGACTACGGACTAGTTTCGCTTGCCAA 2222
Query 2082 AACTAGTTCTTTGTACATGAAGTATAACAGTGAGCATCAAGCACCATACTGGAGAGGTGC 2141
||| |||||| |||| ||||| ||||| ||||||| | |||||||||||||||||| |
Sbjct 2223 AACCAGTTCTATGTATATGAAACGTAACACTGAGCATGATGCACCATACTGGAGAGGTCC 2282
Query 2142 TATATGGATGAACATGAACTACATGATTCTTTCTTCCCTGCACCATTACTCTACAGTGGA 2201
||| |||||||||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 2283 TATCTGGATGAACATGAACTACATGATTCTTTCTTCTCTTCACCATTACTCTATAGTGGA 2342
Query 2202 TGGACCGTACAACAGCAAAG-CACGAACGATTTACGA-GGAACTAAGGAGCAATCTA-AT 2258
||| || || | || |||| || || | || ||| | ||||||||||||||| || ||
Sbjct 2343 TGGGCCATATAG-AGAAAAGTCAAGAGCAATATAC-ACGGAACTAAGGAGCAA-CTTGAT 2399
Query 2259 AAGGAACGTGGTTAGAAACTATGACCAGACTGGA-ATTATCTGGGAACACTACGATCAAA 2317
|||||||||||||||||||||| || |||| || | ||||||||||| || ||||||
Sbjct 2400 AAGGAACGTGGTTAGAAACTATTACGAGACAGGGTAC-ATCTGGGAACAATATGATCAAG 2458
Query 2318 CAAAAGGAACTGG-AGAAGGTGCACGTGTCTTCACCGGTTGGTCTGCACTTATCCTC-TT 2375
|| ||||| || | |||| | ||| |||||||||| |||||||| |||| ||| ||
Sbjct 2459 TTAAGGGAACAGGCA-AAGGCACGCGTCTCTTCACCGGCTGGTCTGCGCTTA-CCTTGTT 2516
Query 2376 AATCATGTCCGAAGAATACCCTCTATTTTA 2405
|| ||||||||||| || ||| | |||||
Sbjct 2517 GATTATGTCCGAAGATTATCCTATTTTTTA 2546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95301792990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5