BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24330.1
Length=2701
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472912 jgi|Araly1|472912|fgenesh2_kg.1__2866__AT1G24330.1 3134 0.0
Ahg315769 jgi|Araly1|315769|fgenesh1_pm.C_scaffold_2000802 1768 0.0
> Ahg472912 jgi|Araly1|472912|fgenesh2_kg.1__2866__AT1G24330.1
Length=2298
Score = 3134 bits (1697), Expect = 0.0
Identities = 1943/2061 (94%), Gaps = 20/2061 (1%)
Strand=Plus/Plus
Query 438 GAAAGCAAAATCTGCACTTATCGATAGTCTTAGACGTGTGGAGGACATTGTTCCTAGTTC 497
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||
Sbjct 237 GAAAGCAAAATCTGCACTTATCAATAGTCTTAGACGCGTGGAGGACATTGTTCCTAGCTC 296
Query 498 AATTGGGTCTCAGATTTTGGACATTGTTGGTGAACTAGAGCACACCAAGTTCCTACTTGA 557
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 297 AATTGGGTCTCAGATTTTGGACATTGTTGGTGAACTAGAGCACACCAAGTTCTTACTTGA 356
Query 558 TCCATCAGAGAAGGAAGTTGGTGATAGGATAATTGCACTATTACAACAAGGGAAGAAATT 617
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 357 TCTATCAGAGAAGGAAGTTGGTGATAGGATAATTGCACTATTGCAACAAGGGAAGAAATT 416
Query 618 TGACAACGGCAGTGACAGTACCGAACTTGAAATTTTTCACCAGGCAGCTACTAGACTCAG 677
||||||||||| |||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 417 TGACAACGGCAATGACAGCACCGAACTTGAAATTTTTCACCAGGCAGCTACTAGATTAAG 476
Query 678 TATAACTTCTTCTAGATCAGCTCTGGCGGAGCGGCGTGCTTTAAAGAAAGTCATTGACAG 737
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 477 TATAACTTCTTCTAGATCAGCTCTGGCGGAGCGGCGTGCTTTAAAGAAACTCATTGACAG 536
Query 738 GGCACGTGTGGAAGAAGACAAGCGGAAGGAGTCAATTGTGGCTTATCTGTTGCATCTCAT 797
|||||||||||||||||| || ||||||||||||||||||||||| || |||||||||||
Sbjct 537 GGCACGTGTGGAAGAAGATAAACGGAAGGAGTCAATTGTGGCTTACCTCTTGCATCTCAT 596
Query 798 GAGAAAATACTCCAAGCTATTTAGAAGTGAGATGATGGATGAGAATGACTCTCCTTGTTC 857
||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| |||||
Sbjct 597 GAGAAAATACTCCAAGCTATTCAGAAGTGAGATGTTGGATGAGAATGATTCTCCGTGTTC 656
Query 858 AACACCGTGTTCCCCTACTGGTCAAGGTCCTAACGAAGATCGTGTTAATGCGTTTGGGCG 917
|||||| |||||||| |||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 657 AACACCATGTTCCCCCACTGGTCAAGGTTCTAATGAAGATCGTGTTAATGCGTTTGGGCG 716
Query 918 ACAACTATCCAAGTTTGGTTCTATTAACTATAAGCCTATGAACAGTAGGAAATCAGGACA 977
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 717 TCAACTATCCAAGTTTGGTTCTATTAACTATAAGCCTATGAACAGTAGGAAACCAGGACA 776
Query 978 GATGCCTATTCCACCAGAAGAACTTAGGTGTCCCATATCTTTGCAGCTTATGTATGATCC 1037
|||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 777 GATGCCCATCCCACCAGAAGAACTTAGGTGTCCCATATCTTTGCAGCTTATGTGTGATCC 836
Query 1038 TGTCATCATTGCTTCTGGACAGACTTATGAACGGGTCTGTATTGAGAAATGGTTTAGTGA 1097
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 837 TGTCATTATTGCTTCTGGACAGACTTATGAACGGGTCTGTATCGAGAAATGGTTCAGTGA 896
Query 1098 TGGACATAACTCTTGTCCCAAGACTCAGCAGCAACTCCCACATCTTTCCCTGACTCCCAA 1157
||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 897 TGGACATAACTCTTGCCCCAAGACTCAGCAGCAGCTCCCACATCTTTCCCTAACTCCCAA 956
Query 1158 TTACTGTGTTAAAGGTTTGATTGCGAGCTGGTGTGAACAGAATGGAATCACAGTCCCTAC 1217
|||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| |
Sbjct 957 TTACTGTGTTAAAGGTCTGATTGCGAGCTGGTGTGAGCAGAATGGAATCTCAGTCCCCAA 1016
Query 1218 TGGACCACCAGAATCTCTTGACCTCAATTACTGGAGATTAGCCATGTCTGACTCTGAATC 1277
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1017 TGGACCACCAGAATCTCTTGACCTCAACTACTGGAGACTAGCCATGTCTGACTCTGAATC 1076
Query 1278 CCCCAATTCAAAGTCAGTTGATAGTGTAGGATTGTGCACACCGAAGGATATCAGAGTCGT 1337
|||||||||||||||||||||||||||||||| |||||||||||||| | | | | ||||
Sbjct 1077 CCCCAATTCAAAGTCAGTTGATAGTGTAGGATCGTGCACACCGAAGGTTGTTAAAATCGT 1136
Query 1338 TCCTTTGGAGGAGAGTAGTACTATTGAATCTGAACGACAACaaaaagaaaaaaaCAATG- 1396
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1137 TCCTTTGGAGGAGAGTAGTACTATTGAATCTGAACGACAACAAAAAGAAGAAAACAATGA 1196
Query 1397 -C------TC-CTGATGAGGTGGATTCTGAAATCAATGTTCTAGAGGGGTATCAGGATAT 1448
| || |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1197 TCTTGTTGTCAATGATGAGGTGGATTCTGAAATCAATGTTCTAGAGGGGTATCATGATAT 1256
Query 1449 ATTGGCAATCGTGGACAAAGAGGAGGACTTAGCTAAAAAGTGCAAAGTAGTAGAAAATGT 1508
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1257 ATTGGCAATCTTGGACAAAGAGGAGGACTTGGCTAAAAAGTGCAAAGTAGTAGAAAATGT 1316
Query 1509 CAGGATATTGCTAAAGGATAATGAAGAGGCCAGGATCCTCATGGGAGCCAATGGGTTCGT 1568
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 CAGGCTATTGCTAAAGGATAATGAAGAGGCCAGGATCCTCATGGGAGCCAATGGGTTCGT 1376
Query 1569 GGAAGCGTTTTTGCAGTTTCTAGAATCAGCTGTTCATGATAACAATGCAGCCGCACAGGA 1628
||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1377 CGAAGCATTTTTACAGTTTCTAGAGTCAGCTGTTCATGAAAACAATGCAGCCGCACAGGA 1436
Query 1629 AACCGGAGCTATGGCTCTATTTAACTTAGCAGTCAACAATAACAGGAACAAAGAGCTGAT 1688
||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||
Sbjct 1437 AACCGGAGCTATGGCTCTATTTAACTTAGCAGTGAACAATAACAGGAACAAAGGGTTGAT 1496
Query 1689 GCTGACTTCAGGGGTCATCCCACTGCTAGAGAAAATGATTTCTTGTTCCCAATCCCAAGG 1748
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1497 GCTGACTTCAGGGGTCATCCCACTGCTGGAGAAAATGATTTCTTGTTCCCAATCCCAAGG 1556
Query 1749 GCCAGCAACTGCGTTATATCTAAACCTCTCTTGCCTCGAGAAAGCCAAGCCCGTGATTGG 1808
|||||||||||| ||||||||||||||||| ||||||||| |||||||||| ||||||||
Sbjct 1557 GCCAGCAACTGCATTATATCTAAACCTCTCATGCCTCGAGGAAGCCAAGCCTGTGATTGG 1616
Query 1809 CTCAAGTCAAGCAGTTTCCTTTTTCGTGAATCTTCTTCTTCAGGATA-CGAAAACCCAAT 1867
|||||| ||||||||| || ||||||||||||||||||||||||| | || |||||||||
Sbjct 1617 CTCAAGCCAAGCAGTTCCCGTTTTCGTGAATCTTCTTCTTCAGGAAACCG-AAACCCAAT 1675
Query 1868 GCAAGCTGGACGCCC-T-------T-CACGCCCTCTACAACCTCTCCACCTACTCTCCCA 1918
||||||||||||||| | | |||||||||||||||||||||||||||||||| |
Sbjct 1676 GCAAGCTGGACGCCCTTCACGCCCTCCACGCCCTCTACAACCTCTCCACCTACTCTCCAA 1735
Query 1919 ATATTCCCACTCTCCTTTCATCAAACATAATCAAAAGCCTCCAAGTCCTTGCATCAACAG 1978
||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 1736 ATATTCCCACTCTTCTTTCATCAAATATTATCAAAAGCCTCCAAGTGCTTGCATCAACAG 1795
Query 1979 GTAACCACTTGTGGATAGAGAAGTCATTAGCCGTATTACTAAATCTAGCCTCTAGCCGGG 2038
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1796 GTAACCACTTGTGGATAGAGAAGTCATTAGCCGTTTTACTAAACCTAGCCTCTAGCCGGG 1855
Query 2039 AAGGAAAAGAAGAGATGATAACAACACAAGGAATGATCAGTACACTTGCAACGGTGTTAG 2098
|||| ||||||||||||||| |||||||||| ||||||||||| |||||||||||| |||
Sbjct 1856 AAGGGAAAGAAGAGATGATATCAACACAAGGCATGATCAGTACTCTTGCAACGGTGCTAG 1915
Query 2099 ACACCGGTGACACAGTCGAACAAGAGCAAGCAGTTTCTTGCCTAGTGATCCTATGTACGG 2158
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1916 ACACCGGTGACACGGTCGAACAAGAGCAAGCAGTTTCTTGCCTTGTGATCCTATGTACGG 1975
Query 2159 GAAGCGAGTCGTGTATCCAGATGGTGCTACAAGAAGGAGTGATTCCGTCTCTGGTGTCGA 2218
|||| |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1976 GAAGTGAGTTGTGTATCCAGATGGTGCTACAAGAAGGAGTGATTCCATCTCTGGTTTCGA 2035
Query 2219 TCTCAGTGAACGGAAGTCCCCGAGGAAGAGACAAGTCTCAGAAGCTTCTGATGCTGTTCA 2278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 TCTCAGTGAACGGAAGTCCCCGAGGAAGAGACAAGTCTCAGAAGCTTCTGATGCTGTTCA 2095
Query 2279 GGGAACAAAGGCATAGAGATCAGCCATCACCAAACAAAGAAGAAGCTCCCAGGAAAACCG 2338
||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 2096 GGGAACAAAGGCAAAGAGATCAGCCATCACCAAAGAGAGATGAAGCTCCCAGGAAAACCG 2155
Query 2339 TATCGGCACCAATGGCTATACCTGCGCCAGTTTCAGCTCCAGAGTCAGAAGTAAAACCTT 2398
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 2156 TATCGGCACCAATGGCTATACCTGCGCCAGTTTTAGCTCCAGATTCAGAAGTAAAACCTT 2215
Query 2399 TGACTAAATCAATCTCCAGAAGAAAGACAATGACAAGACCATTCAGTTTCCTCTGGAAGA 2458
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 2216 TGACTAAATCAATCTCCAGAAGGAAGACAATGACAAAACCATTCAGTTTCCTCTGGAAGA 2275
Query 2459 AAAGCCACTCGATCCATCATT 2479
||||| |||||||||| ||||
Sbjct 2276 AAAGCTACTCGATCCACCATT 2296
Score = 405 bits (219), Expect = 9e-112
Identities = 231/237 (97%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 166 ATGGATGTTAGCGAGCTCGAGGAGAATTTGTTCGCTGCTAGCGATGCCAAGTTACATGGA 225
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGATGTAAGCGAGCTCGAGGAGAATTTGTTCGCTGCTAGCGATGCCAAGTTACATAGA 60
Query 226 GATATGTGCAAGGAACTATCTGCAGTTTATTGCAAGGTATTGTCCATCTTCCCTTCGTTG 285
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GATATGTGCAAGGAACTATCTGCAGTTTATTGCAAGGTATTGTCCATCTTCCCGTCGTTG 120
Query 286 GAAGAAGCAAGACCTCGGAGTAAATCAGGGATTCAAACCTTGTGTTCGTTACATATTGCA 345
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 GAAGAAGCAAGACCTCGGAGTAAATCAGGGATTCAAGCCTTGTGTTCGTTACATATTGCA 180
Query 346 CTTGAGAAGGCAAAGAACATTCTTCAACACTGTTCTGAGTGTAGCAAACTTTATTTG 402
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTGAAAAGGCTAAGAACATTCTTCAACACTGTTCTGAGTGTAGCAAACTTTATTTG 237
> Ahg315769 jgi|Araly1|315769|fgenesh1_pm.C_scaffold_2000802
Length=2364
Score = 1768 bits (957), Expect = 0.0
Identities = 1807/2209 (82%), Gaps = 91/2209 (4%)
Strand=Plus/Plus
Query 166 ATGGATGTTAGC-GAGCTCGAGGAGAATTTGTTCGCTGCTAGCGATGCCAAGTTACATGG 224
|||||||| | | ||||| ||||||||| | ||||| ||||||||||| |||||||||||
Sbjct 1 ATGGATGTGA-CAGAGCTTGAGGAGAATCTATTCGCGGCTAGCGATGCTAAGTTACATGG 59
Query 225 AGATATGTGCAAGGAACTATCTGCAGTT-TATTGCAAGGTATTGTCCATCTTCCCTTCGT 283
||||||||||||||||||||||| |||| ||| |||||||| | || |||||||| || |
Sbjct 60 AGATATGTGCAAGGAACTATCTGGAGTTCTAT-GCAAGGTACTCTCAATCTTCCCGTCAT 118
Query 284 TGGAAGAAGCAAGACCTCGGAGTAAATCAGGGATTCAAACCTTGTGTTCGTTACATATTG 343
|||||| ||| ||||| || ||||||||||||||||| ||||||| || ||||||||||
Sbjct 119 TGGAAGGAGCTAGACCGCGTAGTAAATCAGGGATTCAGGCCTTGTGCTCTTTACATATTG 178
Query 344 CACTTGAGAAGGCAAAGAACATTCTTCAACACTGTTCTGAGTGTAGCAAACTTTATTTGG 403
||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||| ||||
Sbjct 179 CACTTGAGAAGGCAAAGAATATTCTTCAGCACTGTTCTGAATGTAGTAAACTTTACTTGG 238
Query 404 CCATTACTGGGGATGCTGTACTGTTAAAATTTGAGAAAGC-AAAATCTGCACTTATCGAT 462
|||| || |||||||| || || ||||| ||||||||||| ||||| ||| || |||||
Sbjct 239 CCATAACGGGGGATGCGGTTCTTTTAAAGTTTGAGAAAGCGAAAAT-TGCTCTCATCGAC 297
Query 463 AGTCTTAGACGTGTGGAGGACATTGTTCCTAGTTCAATTGGGTCTCAGATTTTGGACATT 522
|||||| |||||| || |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 298 GGTCTTAAACGTGTAGAAGACATTGTTCCTAGTTCAATTGGGTCACAGATTTTGGAAATT 357
Query 523 GTTGGTGAACTAGAGCACACCAAGTTCCTACTTGATCCATCAGAGAAGGAAGTTGGTGAT 582
||||||||||||||| |||||| |||| | ||||||||||| ||||||||||| ||||||
Sbjct 358 GTTGGTGAACTAGAGAACACCAGGTTCATGCTTGATCCATCGGAGAAGGAAGTCGGTGAT 417
Query 583 -AGGATAATTGCACTATTACAACAAGGGAAGAAATTTGACAACGGCAGTGACAGTACCGA 641
|| || |||||| | | ||||||||||| |||||||||||| | | ||||| |||||
Sbjct 418 CAG-ATCATTGCATTGCTCCAACAAGGGAAAAAATTTGACAACTGTAATGACAACACCGA 476
Query 642 ACTTGAAATTTTTCACCAG-GCAGCTACTAGACTCAGTATAACTTCTTCTAGA-TCAGCT 699
||||||||||| |||| | |||||||||||||||||||| |||||||||||| | |||
Sbjct 477 GCTTGAAATTTTCCACC-GTGCAGCTACTAGACTCAGTATCACTTCTTCTAGAGTG-GCT 534
Query 700 CTGGCGGAGCGGCGTGCTTTAAAGAAAGTCATTGACAGGGCACGTG-TGGAAGAAGACAA 758
|||||||| || | ||| |||||||| |||||||||||||||| | || ||||||||||
Sbjct 535 CTGGCGGAACGAAGGGCTCTAAAGAAACTCATTGACAGGGCACGCGCTG-AAGAAGACAA 593
Query 759 GCGGAAGGAGTCAATTGTGGCTTATCTGT-TGCATCTCATGAGAAAATACTCCAAGCTAT 817
||| ||||| ||||||||||||||||| | ||||||| |||||||||| |||||||||||
Sbjct 594 GCGTAAGGAATCAATTGTGGCTTATCT-TCTGCATCTTATGAGAAAATGCTCCAAGCTAT 652
Query 818 TTAGAAGTGAGATGATGGATGAGAATGACTCTCCTTGTTCA-ACACCGTGTTCCCCTACT 876
| ||||||||||| |||||||||||||||||| ||||| | || ||||| |||||
Sbjct 653 TCAGAAGTGAGATTTTGGATGAGAATGACTCTCAGGGTTCATAT-CCATGTTCTCCTACC 711
Query 877 GGTCAAGGTCCTAACGAAGATCGTG----T-TA-ATGCGTTTGGGCGACAACTATCCAAG 930
| ||| ||| ||| |||||||||| | | ||| |||||| || || ||||| | |
Sbjct 712 GTTCAGGGTTTTAATGAAGATCGTGGGAGTGTTCATGGGTTTGGCCGTCAGCTATCGAGG 771
Query 931 TTTGGTTCTATTAA-CTATAAGCCTATGAACAGTAGGAAAT-CAGGACAGATGCCTATTC 988
||||||||| |||| | | ||||| ||||||| | |||| ||||||||||||| |||
Sbjct 772 TTTGGTTCT-TTAAACGACAAGCCCGTGAACAGCAT-AAATTCAGGACAGATGCCCGTTC 829
Query 989 CACCAGAAGAACTTAGGTGTCCCATATCTTTGCAGCTTATGTATGATCCTGTCATCATTG 1048
|||| |||||||| || || |||||||||||||| ||||||| |||||||||||| ||||
Sbjct 830 CACCCGAAGAACTGAGATGCCCCATATCTTTGCAACTTATGTGTGATCCTGTCATTATTG 889
Query 1049 CTTCTGGACAGACTTATGAACGGGTCTGTATTGAGAAATGGTTTAGTGATGGACATAACT 1108
|||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 890 CTTCAGGGCAGACTTATGAACGGGTCTGTATTGAGAAATGGTTCAGTGATGGGCATAA-T 948
Query 1109 -CTTGTCCCAA-GACTCAGCAGCAACTCCCACATCTTTCCCTGACTCCCAATTACTGTGT 1166
| || ||||| |||||| || || ||||||||||| || ||||||||||| |||||||
Sbjct 949 ACCTG-CCCAAAGACTCAACAACAGCTCCCACATCTCTCTTTGACTCCCAATAACTGTGT 1007
Query 1167 TAAAGGT-TTGATTGCGAGCTGGTGTGAACAGAATGGAA-TCACAGTCCCTACTGGACCA 1224
||||||| || ||||| |||||||||||||||||||||| ||| | |||||| ||| |||
Sbjct 1008 TAAAGGTCTT-ATTGCAAGCTGGTGTGAACAGAATGGAACTCAAA-TCCCTAGTGGGCCA 1065
Query 1225 CCAGAATCTCTTGACCTCAATTACTGGAGATTAGC-CATGTCTGACTCTGAATCCCCCAA 1283
|| ||||||| |||||| | ||||||||| |||| | | || |||||||||||| ||||
Sbjct 1066 CCGGAATCTCAAGACCTCGACTACTGGAGACTAGCTC-TCTCCGACTCTGAATCCACCAA 1124
Query 1284 TTCAAAGTCAGTTGATAGTGTAGGATTGTGCACACCGAAGGATATCAGAGTCGTTCCTTT 1343
||| |||| || | ||| |||| | ||| | | ||||| || | | | ||||| ||
Sbjct 1125 ATCACAGTCGGTCAACAGTATAGGGTCGTGTAAATTGAAGGGCATAAAAATTGTTCCGTT 1184
Query 1344 GGAGGAGAGTAGTACTATTGAA-TCTGAACGACAACaaaa-agaaaaaaaCAATGC-TCC 1400
|||||||| | |||||| || || ||||||||| || | |||| ||| || ||
Sbjct 1185 GGAGGAGAATGGTACTACTGTTGTC-GAACGACAA-AACACAGAAGAAAGTTTTGTGTCT 1242
Query 1401 --TGATGA-G--G-TG-G-ATTCTGAAAT-CAATGTTCTAGAGGGGTATCAGGATATATT 1451
|||||| | | || | ||||||| | || ||| || || ||||||| ||| ||||
Sbjct 1243 GATGATGATGATGATGAGGATTCTGATTTACA-TGTACTTCAGAGGTATCAAGATTTATT 1301
Query 1452 GGCAATCGTGGACAAAGAGGAGGACTTAGCTAAAAA-GTGCAA-AGTAGTAGAAAATG-T 1508
||| ||| | || |||||||||| || | ||||| | | || | | |||||||| | |
Sbjct 1302 GGCTATCTTAAACGAAGAGGAGGATTTGGAGAAAAAAG-GTAAGATT-GTAGAAAA-GAT 1358
Query 1509 CAGGATATTGCTAAAGGATAATGAAGAGGCCAGGATCCTCATGGGAGCCAATGGGTTCGT 1568
|||| ||||||| |||||| ||||||||||||||||| ||||||||||||| ||||| ||
Sbjct 1359 CAGGCTATTGCTGAAGGATGATGAAGAGGCCAGGATCTTCATGGGAGCCAACGGGTTTGT 1418
Query 1569 GGAAGCGTTTTTGCAGTTTCT-AGAATCAGCTGTTCATGATAACAATGCAGCCGCACAGG 1627
||||| || || | ||| || || ||||||||| |||| |||||||| || || ||||
Sbjct 1419 CGAAGCCTTGTTACGGTT-CTTAGGATCAGCTGTGGATGAGAACAATGCGGCAGCTCAGG 1477
Query 1628 AAACCGGAGCTATGGCTCTATTTAACTTAGCAGTCAACAATAACAGGAACAAAGAGCTGA 1687
| | |||||||||||||| || || ||||| |||||||| ||||||||||||||| |||
Sbjct 1478 ATAGTGGAGCTATGGCTCTGTTCAATTTAGCCGTCAACAACAACAGGAACAAAGAGTTGA 1537
Query 1688 TGCTGACTTCAGGGGTCATCCCACTGCTAGAGAAAATGATTTCTTGTTCCCAATCCCAAG 1747
|| | ||||| ||||| || || |||| ||||||||||| |||| ||| | |||||||
Sbjct 1538 TGTTAACTTCTGGGGTGATTCCGTTGCTCGAGAAAATGATCTCTTCTTCTGAGTCCCAAG 1597
Query 1748 GGCCAGCAACTGCG-TTATATCTAAACCTCTCTTGCCTCGA-GAAAGCCAAGCCCGTGAT 1805
| ||||||| ||| || ||||| || || || || ||||| ||| || ||| |||||||
Sbjct 1598 GTTCAGCAACCGCGCTT-TATCTCAATCTTTCCTGTCTCGATGAA-GCAAAGTCCGTGAT 1655
Query 1806 TGGCTCAAGTCAAGCAGTTTCCTTT--TTCGTG-AATCTTCTTCTTCAGG-ATA-CGAAA 1860
|| ||||| |||||||| ||||| || || || ||||||| ||| | | |||||
Sbjct 1656 AGGTTCAAGCCAAGCAGTA-CCTTTCCTT-GTCCAA-CTTCTTCAG-AGGGAAATCGAAA 1711
Query 1861 ACCCAATGCAAGCTGGACGCCCTTCACGCCCTCTACAACCTCTCCACCTACTCTCCCAAT 1920
||||||||||||| || || |||||||||||||||||||| ||||| || || ||||||
Sbjct 1712 -CCCAATGCAAGCTCGATGCTCTTCACGCCCTCTACAACCTTTCCACATATTCCCCCAAT 1770
Query 1921 ATTCCCA-CTCTCCTTTCATCAAACATAATCAAAAGCCTCCAAGTCCTTG-CA--TCAAC 1976
|| ||| ||||||||||||| ||||| ||||| |||||||||| |||| || |||||
Sbjct 1771 AT-CCCTGCTCTCCTTTCATCTAACATCATCAAGAGCCTCCAAGGCCTTCTCACATCAAC 1829
Query 1977 AGGT-AACCACTTGTGGATAGAGAAGTCATTAGCCGTATTACTAAATCTAGCCTCTAGCC 2035
|||| || | ||||||| ||||||||||||||||||||| ||||||||||| || ||||
Sbjct 1830 AGGTGAAA-ATTTGTGGACAGAGAAGTCATTAGCCGTATTGCTAAATCTAGCTTCGAGCC 1888
Query 2036 GGGAAGGAAAAGAAGA-GATGATAACAACACAAGGAATGATCAGTACACTTGCAACGGTG 2094
|||||| ||||| || | | || || ||||||| |||||||| | || ||||| |||
Sbjct 1889 AGGAAGGCAAAGATGAAGCGG-TATCATCACAAGGCATGATCAGCAGTCTAGCAACAGTG 1947
Query 2095 TTAGACACCGGTGACACAGTC-GAACAAGAGCAAGCAGTTTCTTGCCTAGTGATCCTATG 2153
|||||| |||||||| | | || || |||||||| ||||| ||||| |||| |||||
Sbjct 1948 CTAGACATGGGTGACAC-GACAGAGCAGGAGCAAGCTGTTTCATGCCTTTTGATTCTATG 2006
Query 2154 TACGGGAAGCGAGTCGTGTATCCAGATGGTGCTACAAGAAGGAGTGATTCCGTC-TCTGG 2212
| ||||| ||||| |||||||| ||||||||||||||||| ||||| || || | | |
Sbjct 2007 CAATGGAAGAGAGTCTTGTATCCAAATGGTGCTACAAGAAGGTGTGATACCATCAT-TAG 2065
Query 2213 TGTCGATCTCAGTGAACGGAAGTCCCCGAGGAAGAGACAAGTCTCAGAAGCTTCTGATGC 2272
|||| |||||||||||||| | || ||||| ||||| ||||||||||||||||| ||||
Sbjct 2066 TGTCAATCTCAGTGAACGGGACACCGCGAGGCAGAGAGAAGTCTCAGAAGCTTCTAATGC 2125
Query 2273 TGTTCAGGGAACAAAGGCAT-A--GAGATCAGCCATCACCAAACAAAGA 2318
|||| ||||||||| |||| | | ||||||||||| ||||||| |||
Sbjct 2126 TGTTTAGGGAACAACGGCAGCAACGGGATCAGCCATCTCCAAACAGAGA 2174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101891405375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5