BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24350.3
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921751 jgi|Araly1|921751|scaffold_103032.1 717 0.0
Ahg326979 jgi|Araly1|326979|fgenesh1_pm.C_scaffold_6002199 468 4e-131
Ahg315776 jgi|Araly1|315776|fgenesh1_pm.C_scaffold_2000809 387 1e-106
> Ahg921751 jgi|Araly1|921751|scaffold_103032.1
Length=554
Score = 717 bits (388), Expect = 0.0
Identities = 435/457 (95%), Gaps = 6/457 (1%)
Strand=Plus/Plus
Query 229 ACTAGATCCATCATCGGCCATGGAGGATTCTACAGCCACGGCTA------CGTCTTCGTC 282
||||||||||||||||||||||||||| ||||| || ||||||| ||||||||||
Sbjct 3 ACTAGATCCATCATCGGCCATGGAGGAATCTACGGCTACGGCTACGTCTTCGTCTTCGTC 62
Query 283 TTCCACTCATTATTTCTCCATTTTCACGAATTATCCTCTCATTTCCGCCGTCACCTCTTT 342
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 63 TTCCACTCATTATTTCTCCATTTTCACGAATTATCCTCTGATTTCCGCCGTCACCTCTTT 122
Query 343 CACTATCGCTCAATTCATCAAACTCTTCACCTCCTGGTATAGGGAACGGAGATGGGATCT 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 CACTATCGCTCAATTCATCAAACTCTTCACCTCCTGGTATAGGGAACGGAGATGGGATCT 182
Query 403 CAAACAGCTTATTGGGTCTGGAGGAATGCCTTCTTCGCATTCAGCGACCGTTACAGCTCT 462
|||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 183 CAAACAGCTTATTGGGTCCGGAGGAATGCCTTCTTCACATTCAGCTACCGTTACAGCTCT 242
Query 463 CGCTGTAGCTATTGGTTTACAAGAAGGCTTTGGTGGATCACATTTTGCCATTGCTTTGAT 522
|||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |
Sbjct 243 CGCTGTAGCTATTGGTTTGCAAGAGGGTTTTGGTGGATCACATTTTGCCATTGCTTTGGT 302
Query 523 TTTGGCATCTGTTGTGATGTATGATGCTACCGGTGTTAGATTACATGCTGGTCGTCAAGC 582
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 303 TTTGGCATCTGTTGTGATGTATGATGCTACCGGTGTTAGGTTACATGCCGGTCGTCAAGC 362
Query 583 TGAGGTTCTCAATCAGATTGTATATGAACTTCCTGCAGAACATCCGCTGGCTGAAAGCAG 642
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 363 TGAGGTTCTTAATCAGATTGTATACGAACTTCCTGCAGAACATCCGCTGGCTGAAAGCAG 422
Query 643 ACCTTTGCGGGAACTTCTTGGTCATACCCCTCCCCAG 679
|||||||||||||||||| ||||||||||||||||||
Sbjct 423 ACCTTTGCGGGAACTTCTCGGTCATACCCCTCCCCAG 459
Score = 167 bits (90), Expect = 1e-40
Identities = 94/96 (98%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 733 GGTCGTTGCTGGTGGAATGCTTGGAAGTGCTACAGCAGTCACCGGATACTTATTTTTCAG 792
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 459 GGTCGTTGCTGGTGGAATGCTTGGAAGTGCCACAGCAGTCACTGGATACTTATTTTTCAG 518
Query 793 GATAGCTACAAGCTAACGTCAAGAACATGCATAGAC 828
||||||||||||||||||||||||||||||||||||
Sbjct 519 GATAGCTACAAGCTAACGTCAAGAACATGCATAGAC 554
> Ahg326979 jgi|Araly1|326979|fgenesh1_pm.C_scaffold_6002199
Length=534
Score = 468 bits (253), Expect = 4e-131
Identities = 473/565 (84%), Gaps = 71/565 (13%)
Strand=Plus/Plus
Query 269 GCTACGTCTTCGTCTTCCACTCATTATTTCTCCATTTTCACGAATTATCCTCTCATTTCC 328
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 16 GCTACGTCTTCGTCTTCCACTCATTATTTCTCCATTTTCACGAATTATCCTCTGATTTCC 75
Query 329 GCCGTCACCTCTTTCACTATCGCTCAATTCATCAAACTC-T----T-C----A------C 372
||||||||||||||||||||||||||||||||||||||| | | | | |
Sbjct 76 GCCGTCACCTCTTTCACTATCGCTCAATTCATCAAACTCTTCACCTCCTGGTACGTTCTC 135
Query 373 -CTC-----CT-GGTATAGGGAACGGAGATGGGATCTCAAACAGCTTATTGGGTCTGGAG 425
||| || |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 136 TCTCTATATCTATGTATAGGGAACGGAGATGGGATCTCAAACAGCTTATTGGGTCCGGAG 195
Query 426 GAATGCCTTCTTCGCATTCAGCGACCGTTACAGCTCTCGCTGTAGCTATTGGTTTACAAG 485
||||| | | || | || || | | |||||||||||| ||| ||||
Sbjct 196 GAATG-------C-C-TT-------C-TT-CA---C-C-CTGTAGCTATTGCTTTGCAAG 232
Query 486 AAGGCTTTGGTGGATCACATTTTGCCATTGCTTTGATTTTGGCATCTGTTGTGATGTATG 545
| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 233 AGGGCTTTGGTGGATCGCATTTTGCCATTGCTTTGGTTTTGGCATCTGTTGTGATGTATG 292
Query 546 ATGCTACCGGTGTTAGATTACATGCTGGTCGTCAAGCTGAGGTTCTCAATCAGATTGTAT 605
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 293 ATGCTACCGGTGTTAGATTACATGCCGGTCGTCAAGCTGAGGTTCTTAATCAGATTGTAT 352
Query 606 ATGAACTTCCTGCAGAACATCCGCTGGCTGAAAGCAGACCTTTGCGGGAACTTCTTGGTC 665
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 353 ACCAACTTCCTGCAGAACATCCGCTGGCTGAAAGCAGACCTTTGCGGGAACTTCTCGGTC 412
Query 666 ATACCCCTCCCCAGATAGTTACAGAGTTAGGGGAAATCATGAGTACAAATAGAGTGCTGA 725
|||||||||||||| || | | || | | | | || | ||||||
Sbjct 413 ATACCCCTCCCCAGGTA-T-A-----TTCTGT----T--T---TCCAT-T----TGCTGA 451
Query 726 AGGAAT-C-GGTCGTTGCTGGTGGAATGCTTGGAAGTGCTACAGCAGTCACCGGATACTT 783
| ||| | |||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 452 -G-AATTCAGGTCGTTGCTGGTGGAATGCTTGGAAGTGCCACAGCAGTCACTGGATACTT 509
Query 784 ATTTTTCAGGATAGCTACAAGCTAA 808
|||||||||||||||||||||||||
Sbjct 510 ATTTTTCAGGATAGCTACAAGCTAA 534
> Ahg315776 jgi|Araly1|315776|fgenesh1_pm.C_scaffold_2000809
Length=492
Score = 387 bits (209), Expect = 1e-106
Identities = 344/409 (84%), Gaps = 10/409 (2%)
Strand=Plus/Plus
Query 276 CTTCGTCTTCCACTCATTATTTCTCCATTTTCACGAATTAT-CCTCTCATTTC--CGCCG 332
|||| ||||| | || ||| |||| |||||||| |||| | ||||| ||||| | ||
Sbjct 17 CTTCATCTTCGTCACACTATATCTCAATTTTCACAAATT-TCCCTCTGATTTCATC-CCT 74
Query 333 TCACCTCTTTCACTATCGCTCAATTCATCAAACTCTTCACCTCCTGGTATAGGGAACGGA 392
|| ||||||| ||||| |||||||||||| |||||||||||||||||| ||| |||
Sbjct 75 TC-TAGCTTTCACCATCGCACAATTCATCAAATTCTTCACCTCCTGGTATAAAGAAAGGA 133
Query 393 GATGGGATCTCAAACAG-CTTATTGGGTCTGGAGGAATGCCTTCTTCGCATTCAGCGACC 451
|||||||| | |||| | ||| |||||||||||||||||||||| || |||||||| ||
Sbjct 134 GATGGGATTTGAAAC-GACTTGTTGGGTCTGGAGGAATGCCTTCGTCACATTCAGCAACA 192
Query 452 GTTACAGCTCTCGCTGTAGCTATTGGTTTACAAGAAGGCTTTGGTGGATCACATTTTGCC 511
||||||||| | ||| ||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 193 GTTACAGCTTTAGCTTTAGCTGTTGGTTTACAAGAAGGCTTTGGTGGATCACATTTCGCT 252
Query 512 ATTGCTTTGATTTTGGC-ATCTGTTGTGATGTATGATGCTACCGGTGTTAGATTACATGC 570
|| |||||| || | | | | |||| ||||||||||| || ||||| || ||||||||
Sbjct 253 ATCGCTTTGGTTCTCACTACCA-TTGTTATGTATGATGCAACTGGTGTAAGGTTACATGC 311
Query 571 TGGTCGTCAAGCTGAGGTTCTCAATCAGATTGTATATGAACTTCCTGCAGAACATCCGCT 630
||| || |||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||
Sbjct 312 TGGCCGCCAAGCTGAGGTTCTTAATCAGATTGTGTATGAACTTCCTGCAGAGCATCCTCT 371
Query 631 GGCTGAAAGCAGACCTTTGCGGGAACTTCTTGGTCATACCCCTCCCCAG 679
||||||||||||||| ||||| |||||||| |||||||| ||||| |||
Sbjct 372 GGCTGAAAGCAGACCGTTGCGTGAACTTCTAGGTCATACTCCTCCACAG 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34272502383
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5