BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24360.1
Length=1393
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472909 jgi|Araly1|472909|fgenesh2_kg.1__2863__AT1G24360.1 1759 0.0
Ahg489606 jgi|Araly1|489606|fgenesh2_kg.6__2740__AT1G24360.1 1149 0.0
> Ahg472909 jgi|Araly1|472909|fgenesh2_kg.1__2863__AT1G24360.1
Length=1155
Score = 1759 bits (952), Expect = 0.0
Identities = 1112/1184 (94%), Gaps = 31/1184 (3%)
Strand=Plus/Plus
Query 103 TTTTTGAAATTCTATATATTATTATTGTTTGAGCAGAAACTAAGACAAAATTAAGACTTT 162
||||||||| ||||||||||| |||||||| ||||||| | ||||||||||||||| |
Sbjct 1 TTTTTGAAAATCTATATATTACTATTGTTT-TGCAGAAA-T-AGACAAAATTAAGAC--T 55
Query 163 TCTCTCTTCTTCTTCTCCACTGGGTCGATCTTTACGAGGTTCACTTGTACGGATTCACTT 222
| | || || ||||||||||||||||||||| |||||||||||| | | || ||
Sbjct 56 T-T-TC-TC-TCTTCTCCACTGGGTCGATCTCTACGAGGTTCAC-T-T---GA---AC-- 101
Query 223 TAACAACAGATTCGCCATGGCCGCCGCCGTCGCAGCACCGAGACTCATCTCCTTGAAAGC 282
||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 102 -AAC--C-GATTCGCCATGGCCACCGCCGTCGCAGCACCGAGACTCATCTCCTTGAAAGC 157
Query 283 CGTCGCGAAGCTAGGTTTCCGTGAGATCTCTCAAATCCGACAATTGGCTCCGCTTCACTC 342
|| |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||
Sbjct 158 CGCCGCGAAGCTAGGTTACCGTGAGATCTCTCAGGTCCGACAATGGGCTCCGCTTCACTC 217
Query 343 TGCGATACCTCATTTCGGAATGCTGCGATGTAGATCGCGGCAGCCGTTTTCTACCTCTGT 402
||||||||| |||||||||||||| |||||| |||| || ||||||||||| ||||||||
Sbjct 218 TGCGATACCGCATTTCGGAATGCTACGATGTGGATCCCGACAGCCGTTTTCAACCTCTGT 277
Query 403 TGTGAAAGCTCAAGCTACTGCTACTGAGCAATCACCAGGGGAAGTTGTTCAAAAAGTGGA 462
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 278 TGTGAAAGCTCAAGCGACTGCTACTGAGCAATCACCAGGCGAAGTTGTTCAAAAAGTGGA 337
Query 463 ATCTCCAGTGGTCGTTATCACTGGTGCCTCGAGAGGGATTGGTAAAGCAATTGCTCTAGC 522
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 338 ATCTCCAGTGGTCGTTATCACTGGTGCCTCTAGAGGGATTGGTAAAGCAATTGCTCTAGC 397
Query 523 CTTGGGTAAAGCTGGCTGCAAGGTCTTGGTGAATTATGCTAGGTCAGCAAAAGAGGCTGA 582
|||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 398 CTTGGGGAAAGCTGGCTGCAAGGTCCTGGTGAATTATGCTAGGTCAGCAAAGGAGGCTGA 457
Query 583 AGAAGTTGCTAAACAGATTGAAGAATATGGTGGCCAGGCTATCACTTTTGGGGGTGATGT 642
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 AGAAGTTTCTAAACAGATTGAAGAATATGGTGGCCAGGCTATCACTTTTGGGGGTGATGT 517
Query 643 CTCGAAAGCGACTGATGTGGATGCGATGATGAAAACCGCTCTTGACAAATGGGGAACCAT 702
|||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 518 CTCGAAAGCGGCTGATGTGGATGCAATGATGAAAACAGCTCTTGATAAATGGGGAACCAT 577
Query 703 TGATGTTGTGGTTAACAATGCAGGAATTACTCGGGATACCTTGTTAATACGAATGAAGCA 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 TGATGTTGTGGTTAACAATGCAGGAATTACTCGGGATACCTTGTTAATACGAATGAAGCA 637
Query 763 ATCACAATGGGACGAAGTGATTGCTTTGAATCTCACTGGTGTATTTCTCTGTACTCAGGC 822
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 638 ATCGCAATGGGACGAAGTAATTGCTTTGAATCTCACTGGTGTATTTCTCTGTACTCAGGC 697
Query 823 AGCAGTAAAGATCATGATGAAGaa-aaaaaGGGGAAGAATCATCAATATCTCGTCAGTTG 881
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 698 AGCAGTAAAGATCATGATGAAGAAGAAAAA-GGGAAGAATCATCAATATCTCGTCAGTTG 756
Query 882 TTGGTCTCATTGGTAATATTGGTCAAGCAAACTACGCAGCGGCTAAAGGTGGAGTTATTT 941
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 757 TTGGTCTCATTGGTAATATTGGTCAAGCAAACTACGCTGCAGCTAAAGGTGGAGTTATTG 816
Query 942 CGTTTTCCAAGACTGCT-GCCAGAGAAGGTGCGAGCAGGAATATAAATGTCAATGTGGTT 1000
|||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 817 CGTTTTCCAAGACT-ATAGCCAGAGAAGGTGCGAGCAGGAATATAAATGTCAATGCGGTT 875
Query 1001 TGCCCCGGATTCATTGCATCTGACATGACTGCAGAGCTTGGAGAAGACATGGAAAAGAAA 1060
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 876 TGCCCCGGATTCATTGCATCTGACATGACTGCCGAGCTTGGAGAAGACATGGAAAAGAAA 935
Query 1061 ATCCTGGGAACAATCCCATTAGGACGGTATGGAAAAGCTGAAGAAGTGGCTGGCTTGGTA 1120
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 936 ATCCTGGGAACAATCCCATTAGGACGGTATGGAAAACCGGAAGAAGTGGCTGGCTTGGTA 995
Query 1121 GAATTCTTGGCTCTCAGTCCTGCAGCCAGTTACATAACCGGACAGGCATTCACCATTGAT 1180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 GAATTCTTGGCACTCAGTCCTGCAGCCAGTTACATAACCGGACAGGCATTCACCATTGAT 1055
Query 1181 GGAGGTATTGCTATCTAGACATTTGGTATGAGTCGGCTTTTGTTTAGTTAAAACAATTTG 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 GGAGGTATTGCTATCTAGACATTTGGTATGAGTCGGCTTTTGTTTAGTTAAAACAATTTG 1115
Query 1241 GTAAAAGAGACAAAGTTGAGTTCTTTTTAGCACTTGGTCGGATT 1284
|| ||| |||||| | |||||||| |||||||||||||||||
Sbjct 1116 GTTAAACAGACAA-G---AGTTCTTTCTAGCACTTGGTCGGATT 1155
> Ahg489606 jgi|Araly1|489606|fgenesh2_kg.6__2740__AT1G24360.1
Length=1028
Score = 1149 bits (622), Expect = 0.0
Identities = 668/690 (97%), Gaps = 4/690 (1%)
Strand=Plus/Plus
Query 597 AGATTGAAGAATATGGTGGCCAGGCTATCACTTTTGGGGGTGATGTCTCGAAAGCGACTG 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 341 AGATTGAAGAATATGGTGGCCAGGCTATCACTTTTGGGGGTGATGTCTCGAAAGCGGCTG 400
Query 657 ATGTGGATGCGATGATGAAAACCGCTCTTGACAAATGGGGAACCATTGATGTTGTGGTTA 716
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 401 ATGTGGATGCAATGATGAAAACCGCTCTTGATAAATGGGGAACCATTGATGTTGTGGTTA 460
Query 717 ACAATGCAGGAATTACTCGGGATACCTTGTTAATACGAATGAAGCAATCACAATGGGACG 776
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 461 ACAATGCAGGAATTACTCGGGATACCTTGTTAATACGAATGAAGCAATCGCAATGGGACG 520
Query 777 AAGTGATTGCTTTGAATCTCACTGGTGTATTTCTCTGTACTCAGGCAGCAGTAAAGATCA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 AAGTGATTGCTTTGAATCTCACTGGTGTATTTCTCTGTACTCAGGCAGCAGTAAAGATCA 580
Query 837 TGATGAAGaa-aaaaaGGGGAAGAATCATCAATATCTCGTCAGTTGTTGGTCTCATTGGT 895
|||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 581 TGATGAAGAAGAAAAAGGG-AAGAATCATCAATATTTCGTCAGTTGTTGGTCTCATTGGT 639
Query 896 AATATTGGTCAAGCAAACTACGCAGCGGCTAAAGGTGGAGTTATTTCGTTTTCCAAGACT 955
||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||
Sbjct 640 AATATTGGTCAAGCAAACTACGCTGCAGCTAAAGGTGGAGTTATTGCGTTTTCCAAGACT 699
Query 956 GCTGCCAGAGAAGGTGCGAGCAGGAATATAAATGTCAATGTGGTTTGCCCCGGATTCATT 1015
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 700 ATTGCCAGAGAAGGTGCGAGCAGGAATATAAATGTCAATGCGGTTTGCCCCGGATTCATT 759
Query 1016 GCATCTGACATGACTGCAGAGCTTGGAGAAGACATGGAAAAGAAAATCCTGGGAACAATC 1075
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 GCATCTGACATGACTGCCGAGCTTGGAGAAGACATGGAAAAGAAAATCCTGGGAACAATC 819
Query 1076 CCATTAGGACGGTATGGAAAAGCTGAAGAAGTGGCTGGCTTGGTAGAATTCTTGGCTCTC 1135
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 820 CCATTAGGACGGTATGGAAAAGCTGAAGAAGTGGCTGGTTTGGTAGAATTCTTGGCTCTC 879
Query 1136 AGTCCTGCAGCCAGTTACATAACCGGACAGGCATTCACCATTGATGGAGGTATTGCTATC 1195
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 AGTCCTGCTGCCAGTTACATAACCGGACAGGCATTCACCATTGATGGAGGTATTGCTATC 939
Query 1196 TAGACATTTGGTATGAGTC-GGCTTTTGTTTAGTTAAAACAATTTGGTAAAAGAGACAAA 1254
|||||||||||||||| || |||||||||||||||||||||||||||| ||| |||||||
Sbjct 940 TAGACATTTGGTATGA-TCCGGCTTTTGTTTAGTTAAAACAATTTGGTTAAACAGACAAA 998
Query 1255 GTTGAGTTCTTTTTAGCACTTGGTCGGATT 1284
|||||||||||| ||||| |||||||||||
Sbjct 999 GTTGAGTTCTTTCTAGCAATTGGTCGGATT 1028
Score = 243 bits (131), Expect = 4e-63
Identities = 139/143 (97%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 402 TTGTGAAAGCTCAAGCTACTGCTACTGAGCAATCACCAGGGGAAGTTGTTCAAAAAGTGG 461
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 200 TTGTGAAAGCTCAAGCGACTGCTACTGAGCAATCACCAGGCGAAGTTGTTCAAAAAGTGG 259
Query 462 AATCTCCAGTGGTCGTTATCACTGGTGCCTCGAGAGGGATTGGTAAAGCAATTGCTCTAG 521
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 260 AATCTCCAGTGGTCGTTATCACTGGTGCCTCTAGAGGGATTGGTAAAGCAATTGCTCTAG 319
Query 522 CCTTGGGTAAAGCTGGCTGCAAG 544
||||||| |||||||||||||||
Sbjct 320 CCTTGGGGAAAGCTGGCTGCAAG 342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52069364915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5