BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G24370.1 Length=1242 Score E Sequences producing significant alignments: (Bits) Value Ahg335856 jgi|Araly1|335856|fgenesh1_pg.C_scaffold_1002421 656 0.0 Ahg894730 jgi|Araly1|894730|Al_scaffold_0006_2726 540 1e-152 > Ahg335856 jgi|Araly1|335856|fgenesh1_pg.C_scaffold_1002421 Length=687 Score = 656 bits (355), Expect = 0.0 Identities = 418/448 (93%), Gaps = 5/448 (1%) Strand=Plus/Plus Query 796 GGGGAAACCACCATAGATGTAATCAAGAGATGCAGCAGCAGCTTGTACAAAAACTTCTCC 855 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 244 GGGGAAACCACCATTGATGAAATCAAGAGATGCAGCAGCAGCTTGTACAAAAACTTCTCC 303 Query 856 CCCATAGATACCATGCTTGACTGGCCCCCAGAGAATCCTTTTGAACATTCAAAGCTGTTG 915 ||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| || Sbjct 304 CCCATCGATACCATGCCTGAGTGGCCCCCAGAGAATCCTTTTGAACATTCAAAGCTGCTG 363 Query 916 AATTA-TTATGAGCTGCAAGAAGACAATGACTGGATTCGTCTCTACTTGGAACTTGCAGT 974 || | ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 364 AA-CAGTTATGAGCTGC---AAGACAATGACTGGATTCGTCTCTACTTGGAACTTGCAGT 419 Query 975 TGCCACCACTAATAGGGGCACCATTAGGGATCTTGATGACCTGTCCAACTTGAAGATTAT 1034 |||||| ||||||||||||||| ||| |||| |||||| ||||||||||||| |||| | Sbjct 420 TGCCACGACTAATAGGGGCACCGTTACAGATCATGATGATCTGTCCAACTTGATGATTGT 479 Query 1035 CCAAGTGGCTATAGATACTACTCCCCAAGATGTGGATTTGGTATTCAACCGCACATATTT 1094 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 480 CCAAGTGGCTATAGATACTACTCCCCAAGATGTGGATTTGGTATTAAACCGCACAAATTT 539 Query 1095 TGCAATTGTCTACATACAGTACAAGGACTCGTGCGAGGCTCGAGTTGGTAAGGATGTTGA 1154 ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 540 TGCAATTGTCTACATACGGTACAAGGACTCGTGTGAGGCTCGAGTTGGTAAGGATGTTGA 599 Query 1155 TCGCGTAGCTATAGTCAGAAGAGCCTTCGATGAGCAGCGGGGATGCTTCAGTCTTGTGGG 1214 |||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| Sbjct 600 TCGCGTAGCTATAGTCAGAAGAGCTTTCCATGAGCAGCTGGGATGCTTCAGTCTTGTGGG 659 Query 1215 CAAGACTCTAAGATTGCCAAAAGAGTGA 1242 ||||||||| || || |||||||||||| Sbjct 660 CAAGACTCTGAGTTTACCAAAAGAGTGA 687 > Ahg894730 jgi|Araly1|894730|Al_scaffold_0006_2726 Length=372 Score = 540 bits (292), Expect = 1e-152 Identities = 350/377 (93%), Gaps = 7/377 (2%) Strand=Plus/Plus Query 868 ATGCTTGACTGGCCCCCAGAGAATCCTTTTGAACATTCAAAGCTGTTGAATTA-TTATGA 926 |||| ||| |||||||||||||||||||||||||||||||||||| || | || |||||| Sbjct 1 ATGCCTGAGTGGCCCCCAGAGAATCCTTTTGAACATTCAAAGCTGCTG-AGTAGTTATGA 59 Query 927 GCTGCAAGAAGACAATGACTGGATTCGTCTCTACTTGGAACTTGCAGTTGCCACCACTAA 986 ||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 60 GCTGC---AAGACAATGACTGGATTCGTCTCTACTTGGAACTTGCAGTTTCCACGACTAA 116 Query 987 TAGGGGCACCATTAGGGATCTTGATGACCTGTCCAACTTGAAGATTATCCAAGTGGCTAT 1046 |||||||||| ||| || || |||||| ||||||||| ||| |||| ||||||||| ||| Sbjct 117 TAGGGGCACCGTTATGGTTCATGATGATCTGTCCAACCTGATGATTGTCCAAGTGGTTAT 176 Query 1047 AGATACTACTCCCCAAGATGTGGATTTGGTATTCAACCGCACATATTTTGCAATTGTCTA 1106 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 177 AGATACTACTCCCCAAGATGTGGATTTGGTATTCAACCGCACAAATTTTGCAATTGTCTA 236 Query 1107 CATACA-GTACAAGGACTCGTGCGAGGCTCGAGTTGGTAAGGATGTTGATCGCGTAGCTA 1165 |||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 237 CATA-ATGTACAAGGACTCGTGTGAGGCTCGAGTTGGTAAGGATGTTGATCGCGTAGCTA 295 Query 1166 TAGTCAGAAGAGCCTTCGATGAGCAGCGGGGATGCTTCAGTCTTGTGGGCAAGACTCTAA 1225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 296 TAGTCAGAAGAGCCTTCGATGAGCAGCGGGGATGCTTCAGTCTTGTGGGCAAGACTCTGA 355 Query 1226 GATTGCCAAAAGAGTGA 1242 | || |||||||||||| Sbjct 356 GTTTACCAAAAGAGTGA 372 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46395589989 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5