BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24370.1
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335856 jgi|Araly1|335856|fgenesh1_pg.C_scaffold_1002421 656 0.0
Ahg894730 jgi|Araly1|894730|Al_scaffold_0006_2726 540 1e-152
> Ahg335856 jgi|Araly1|335856|fgenesh1_pg.C_scaffold_1002421
Length=687
Score = 656 bits (355), Expect = 0.0
Identities = 418/448 (93%), Gaps = 5/448 (1%)
Strand=Plus/Plus
Query 796 GGGGAAACCACCATAGATGTAATCAAGAGATGCAGCAGCAGCTTGTACAAAAACTTCTCC 855
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 244 GGGGAAACCACCATTGATGAAATCAAGAGATGCAGCAGCAGCTTGTACAAAAACTTCTCC 303
Query 856 CCCATAGATACCATGCTTGACTGGCCCCCAGAGAATCCTTTTGAACATTCAAAGCTGTTG 915
||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 304 CCCATCGATACCATGCCTGAGTGGCCCCCAGAGAATCCTTTTGAACATTCAAAGCTGCTG 363
Query 916 AATTA-TTATGAGCTGCAAGAAGACAATGACTGGATTCGTCTCTACTTGGAACTTGCAGT 974
|| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 364 AA-CAGTTATGAGCTGC---AAGACAATGACTGGATTCGTCTCTACTTGGAACTTGCAGT 419
Query 975 TGCCACCACTAATAGGGGCACCATTAGGGATCTTGATGACCTGTCCAACTTGAAGATTAT 1034
|||||| ||||||||||||||| ||| |||| |||||| ||||||||||||| |||| |
Sbjct 420 TGCCACGACTAATAGGGGCACCGTTACAGATCATGATGATCTGTCCAACTTGATGATTGT 479
Query 1035 CCAAGTGGCTATAGATACTACTCCCCAAGATGTGGATTTGGTATTCAACCGCACATATTT 1094
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 480 CCAAGTGGCTATAGATACTACTCCCCAAGATGTGGATTTGGTATTAAACCGCACAAATTT 539
Query 1095 TGCAATTGTCTACATACAGTACAAGGACTCGTGCGAGGCTCGAGTTGGTAAGGATGTTGA 1154
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 TGCAATTGTCTACATACGGTACAAGGACTCGTGTGAGGCTCGAGTTGGTAAGGATGTTGA 599
Query 1155 TCGCGTAGCTATAGTCAGAAGAGCCTTCGATGAGCAGCGGGGATGCTTCAGTCTTGTGGG 1214
|||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||
Sbjct 600 TCGCGTAGCTATAGTCAGAAGAGCTTTCCATGAGCAGCTGGGATGCTTCAGTCTTGTGGG 659
Query 1215 CAAGACTCTAAGATTGCCAAAAGAGTGA 1242
||||||||| || || ||||||||||||
Sbjct 660 CAAGACTCTGAGTTTACCAAAAGAGTGA 687
> Ahg894730 jgi|Araly1|894730|Al_scaffold_0006_2726
Length=372
Score = 540 bits (292), Expect = 1e-152
Identities = 350/377 (93%), Gaps = 7/377 (2%)
Strand=Plus/Plus
Query 868 ATGCTTGACTGGCCCCCAGAGAATCCTTTTGAACATTCAAAGCTGTTGAATTA-TTATGA 926
|||| ||| |||||||||||||||||||||||||||||||||||| || | || ||||||
Sbjct 1 ATGCCTGAGTGGCCCCCAGAGAATCCTTTTGAACATTCAAAGCTGCTG-AGTAGTTATGA 59
Query 927 GCTGCAAGAAGACAATGACTGGATTCGTCTCTACTTGGAACTTGCAGTTGCCACCACTAA 986
||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 60 GCTGC---AAGACAATGACTGGATTCGTCTCTACTTGGAACTTGCAGTTTCCACGACTAA 116
Query 987 TAGGGGCACCATTAGGGATCTTGATGACCTGTCCAACTTGAAGATTATCCAAGTGGCTAT 1046
|||||||||| ||| || || |||||| ||||||||| ||| |||| ||||||||| |||
Sbjct 117 TAGGGGCACCGTTATGGTTCATGATGATCTGTCCAACCTGATGATTGTCCAAGTGGTTAT 176
Query 1047 AGATACTACTCCCCAAGATGTGGATTTGGTATTCAACCGCACATATTTTGCAATTGTCTA 1106
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 177 AGATACTACTCCCCAAGATGTGGATTTGGTATTCAACCGCACAAATTTTGCAATTGTCTA 236
Query 1107 CATACA-GTACAAGGACTCGTGCGAGGCTCGAGTTGGTAAGGATGTTGATCGCGTAGCTA 1165
|||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 237 CATA-ATGTACAAGGACTCGTGTGAGGCTCGAGTTGGTAAGGATGTTGATCGCGTAGCTA 295
Query 1166 TAGTCAGAAGAGCCTTCGATGAGCAGCGGGGATGCTTCAGTCTTGTGGGCAAGACTCTAA 1225
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 296 TAGTCAGAAGAGCCTTCGATGAGCAGCGGGGATGCTTCAGTCTTGTGGGCAAGACTCTGA 355
Query 1226 GATTGCCAAAAGAGTGA 1242
| || ||||||||||||
Sbjct 356 GTTTACCAAAAGAGTGA 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46395589989
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5