BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24400.1
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921747 jgi|Araly1|921747|scaffold_103028.1 2170 0.0
Ahg908321 jgi|Araly1|908321|Al_scaffold_0002_1402 1000 0.0
Ahg947663 jgi|Araly1|947663|scaffold_703892.1 475 4e-133
> Ahg921747 jgi|Araly1|921747|scaffold_103028.1
Length=1369
Score = 2170 bits (1175), Expect = 0.0
Identities = 1303/1366 (95%), Gaps = 4/1366 (0%)
Strand=Plus/Plus
Query 243 TCTCTCGATTATATCACAAGGAGATATGGGGAACAGTGAAATGTCAGCGAGTGAGGTTGC 302
|||||||| |||||||||||||||||||||| | |||||||||||| || ||||||||
Sbjct 1 TCTCTCGA--GTATCACAAGGAGATATGGGGAATAATGAAATGTCAGCCAGCGAGGTTGC 58
Query 303 GGCGGCCAAGCAGAAGAACGTCGACGATTGGTTACCGATCACATCTTCCAGAAACGCTAA 362
|||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 59 GGCGGCTAGGCAGAAGAACGTCGACGATTGGTTACCGATCACATCCTCCAGAAACGCTAA 118
Query 363 GTGGTGGTACTCTGCTTTTCACAATGTCACCGCCATGGTTGGTGCTGGTGTTCTTAGCTT 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 119 GTGGTGGTACTCTGCTTTTCACAATGTCACCGCCATGGTTGGTGCTGGTGTTCTCAGCTT 178
Query 423 GCCCTACGCTATGTCCAATCTCGGATGGGGACCTGGAGTGACGATTATGGTGATGTCATG 482
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 179 GCCCTACGCTATGTCCAATCTCGGATGGGGACCTGGTGTGACGATTATGGTGATGTCATG 238
Query 483 GATCATAACGT-TGTACACACTGTGGCAAATGGTGGAGATGCATGAGATTGTTCCAGGGA 541
| | ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GTTAATAAC-TATGTACACACTGTGGCAAATGGTGGAGATGCATGAGATTGTTCCAGGGA 297
Query 542 AGAGGCTTGATAGGTATCACGAGCTAGGTCAACACGCTTTTGGTGAAAAGCTTGGCCTAT 601
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 298 AGAGGCTTGATAGGTATCACGAGCTAGGTCAACACGCTTTTGGCGAAAAGCTTGGCCTAT 357
Query 602 GGATCGTCGTGCCGCAGCAGCTTATCGTGGAGGTCGGTGTTGACATCGTTTATATGGTCA 661
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 358 GGATCGTCGTGCCGCAGCAGCTTATCGTGGAGGTCGGTGTAGACATCGTTTATATGGTCA 417
Query 662 CAGGAGGAGCATCCCTCAAGAAAGTCCATCAACTAGTCTGTCCCGATTGCAAAGAGATCA 721
|||||||||||||||| |||||||||||||||||| ||||| | ||||||||||| ||||
Sbjct 418 CAGGAGGAGCATCCCTTAAGAAAGTCCATCAACTACTCTGTTCTGATTGCAAAGAAATCA 477
Query 722 GAACTACGTTTTGGATCATGATCTTTGCTTCCGTCCACTTTGTTATCTCTCACCTTCCCA 781
||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 478 GAACTACATTTTGGATCATGATCTTTGCTTCCATCCATTTTGTTATCTCTCACCTTCCCA 537
Query 782 ATTTCAACTCTATCTCCATCATCTCACTTGCCGCGGCTGTTATGTCCTTAACTTACTCAA 841
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 538 ATTTCAACTCTATCTCCATCATCTCACTCGCCGCGGCTGTTATGTCCTTAACTTACTCAA 597
Query 842 CTATTGCTTGGGCTGCATCCGTGCACAAAGGGGTACATCCAGATGTGGACTACTCTCCTA 901
|||| |||||| |||| || ||||||||||||||||||||||||||||||||| ||||||
Sbjct 598 CTATCGCTTGGACTGCTTCGGTGCACAAAGGGGTACATCCAGATGTGGACTACACTCCTA 657
Query 902 GAGCATCAACCGATGTTGGAAAAGTATTCAACTTCTTGAATGCGTTGGGAGATGTGGCTT 961
|||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GAGCCTCTACCGATGCTGGAAAAGTATTCAACTTCTTGAATGCGTTGGGAGATGTGGCTT 717
Query 962 TTGCTTATGCAGGTCACAACGTTGTGTTGGAGATTCAGGCCACAATCCCTTCGACTCCGG 1021
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTGCCTATGCAGGTCACAACGTTGTGTTGGAGATTCAGGCCACAATCCCTTCGACTCCGG 777
Query 1022 AGATGCCATCCAAGGTCCCAATGTGGAGAGGAGTTATTGTAGCCTACATTGTAGTCGCCA 1081
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 778 AGATGCCATCCAAGATCCCAATGTGGAGAGGAGTTGTTGTAGCCTACATTGTAGTCGCCA 837
Query 1082 TCTGTTACTTCCCTGTAGCATTCCTCGGCTATTATATCTTTGGAAACAGCGTTGATGACA 1141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TCTGCTACTTCCCTGTAGCATTCCTCGGCTATTATATCTTTGGAAACAGCGTTGATGACA 897
Query 1142 ACATCCTCATCACTTTGGAGAAGCCTATCTGGCTTATTGCTATGGCTAACATGTTCGTGG 1201
|||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 898 ACATTCTCATCACTTTGGAGAAGCCTGTCTGGCTTATTGCCATGGCTAACATGTTCGTGG 957
Query 1202 TTATCCATGTCATTGGAAGCTATCAGATATTTGCAATGCCAGTTTTTGACATGCTCGAAA 1261
|| |||| |||||||||||||||||||||||||||||||| || ||||||||| | ||||
Sbjct 958 TTGTCCACGTCATTGGAAGCTATCAGATATTTGCAATGCCGGTATTTGACATGATGGAAA 1017
Query 1262 CCGTTTTGGTCAAAAAGATGAATTTCAATCCTTCTTTCAAGCTCCGCTTCATTACTCGTA 1321
|||||||||||||||||||||||||| ||||||| |||||||||||||| || |||||||
Sbjct 1018 CCGTTTTGGTCAAAAAGATGAATTTCGATCCTTCCTTCAAGCTCCGCTTTATCACTCGTA 1077
Query 1322 GTCTTTACGTCGCTTTCACGATGATTGTTGCGATATGCGTCCCGTTTTTCGGTGGACTAC 1381
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1078 GCCTTTACGTCGCTTTCACGATGATCGTTGCGATATGCGTCCCGTTTTTCGGTGGACTAC 1137
Query 1382 TCGGCTTCTTTGGAGGATTCGCCTTTGCCCCAACAACTTACTACCTTCCATGCATTATGT 1441
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1138 TTGGCTTCTTTGGAGGATTCGCCTTCGCCCCAACAACTTACTACCTTCCATGCATTATTT 1197
Query 1442 GGCTCGTTCTCAAGAAACCAAAGAGGTTTGGTCTATCTTGGACAGCTAACTGGTTCTGCA 1501
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1198 GGCTCGTTCTCAAGAAACCAAAGAGGTTTGGTCTATCTTGGACAATTAACTGGTTCTGCA 1257
Query 1502 TCATAGTAGGAGTTCTTTTGACGATCCTTGCCCCAATTGGAGGACTCAGAACCATCATTA 1561
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1258 TCATAGTAGGAGTTCTTTTGACGATCCTAGCCCCAATTGGAGGTCTCAGAACCATCATTA 1317
Query 1562 TCAACGCCAAGACCTACAAGTTCTTCTCTTAGATGGATCACttttt 1607
||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1318 TCAACGCCAAGACGTACAAGTTCTTCTCTTAGATCGATCACTTTTT 1363
> Ahg908321 jgi|Araly1|908321|Al_scaffold_0002_1402
Length=1329
Score = 1000 bits (541), Expect = 0.0
Identities = 1053/1300 (81%), Gaps = 36/1300 (3%)
Strand=Plus/Plus
Query 310 AAGCAGAAGAACGTCGACGATTGGTTACCGATCACATCTTCCAGAAACGCTAAGTGGTGG 369
||||||||||| || || || ||||| ||||| || || || ||||| || || ||||||
Sbjct 46 AAGCAGAAGAATGTAGATGACTGGTTGCCGATAACGTCCTCTAGAAATGCCAAATGGTGG 105
Query 370 TACTCTGCTTTTCACAATGTCACCGCCATGGTTGGTGCTGGTGTTCTTAGCTTGCCCTAC 429
|||||||| ||||||||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct 106 TACTCTGCGTTTCACAATGTCACCGCCATGGTCGGAGCTGGTGTGCTCAGCTTACCCTAC 165
Query 430 GCTATGTCCAATCTCGGATGGGGACCTGGAGTGACGATTATGGTGATGTCATGGATCATA 489
|| |||||||| || |||||||||||||||||||| || ||| | ||||||||| | |||
Sbjct 166 GCCATGTCCAACCTTGGATGGGGACCTGGAGTGACAATAATGATAATGTCATGGCTGATA 225
Query 490 ACGTTGTACACACTGTGGCAAATGGTGGAGATGCATGAGATTGTTCCAGGGAAGAGGCTT 549
|| || |||||| | ||||| |||||| | ||||||||||| ||||||||||||||| ||
Sbjct 226 ACATTTTACACAATATGGCAGATGGTGCAAATGCATGAGATGGTTCCAGGGAAGAGG-TT 284
Query 550 -GATAGGTATCACGAGCTAGGTCAACACGCTTTTGGTGAAAAGCTTGGCCTATGGATCGT 608
|| ||||| || || ||||||||||||| ||||| || |||||||| || ||||||||
Sbjct 285 CGACAGGTACCATGAATTAGGTCAACACGCGTTTGGGGAGAAGCTTGGACTCTGGATCGT 344
Query 609 CGTGCCGCAGCAGCTTATCGTGGAGGTCGGTGTTGACATCGTTTATATGGTCACAGGAGG 668
||||| || || || ||||| || || ||||| || || || || ||||| || |||||
Sbjct 345 GGTGCCACAACAACTAATCGTTGAAGTAGGTGTGGATATTGTATACATGGTTACGGGAGG 404
Query 669 AGCA-TCCCTCAAGAAAGTCCATCAACTAGTCTGT-C-CCGATTGCAAAGAGATCAGAAC 725
| | || | || ||| ||||| | || ||| | | ||||||||||| | || |||||
Sbjct 405 -GAAGTCATTGAAAAAAATCCATGACCT--TCTTTGCACCGATTGCAAAAATATAAGAAC 461
Query 726 TACGTTTTGGATCATGATCTTTGCTTCCGTCCACTTTGTTATCT-CTCACCTTCCC-AA- 782
| | | ||||||||||||||| |||||| | ||||||||| | | |||| | |||| ||
Sbjct 462 TTCATATTGGATCATGATCTTCGCTTCCATACACTTTGTTCT-TGCTCATC-TCCCTAAC 519
Query 783 TTTCAACTCTATCTCCATCATCTCACTTGCCGCGGCTGTTATGTCCTT-AACTTACTCAA 841
||| |||||||| || ||| |||| ||||| || || |||||||| || | | || || |
Sbjct 520 TTT-AACTCTATGTCTATCGTCTCCCTTGCTGCTGCCGTTATGTCTTTGAGC-TATTCGA 577
Query 842 CTATTGCTTGGGCTGCATCCGTGCACAAAGGGGTACATCCAGATGTGGACTACTC-TCCT 900
| || |||||||| | || ||| | ||||| || |||||| |||| |||||||| | ||
Sbjct 578 CAATCGCTTGGGCAACCTCGGTGAAGAAAGGAGTTCATCCAAATGTAGACTACTCGT-CT 636
Query 901 AGAGCATCAACCGATGT-TGGAAAAGTATTCAACTTCTTGAATGCGTTGGGAGATGTGGC 959
|||||||| | ||| | ||||| |||||||||||||||||||| | |||||||||||
Sbjct 637 AGAGCATCTA-CGACCTCAGGAAATGTATTCAACTTCTTGAATGCACTAGGAGATGTGGC 695
Query 960 TTTTGCTTATGCAGGTCACAACGTTGTGTTGGAGATTCAGGCCACAATCCCTTCGACTCC 1019
||||| ||||||||||||||||| |||||||||||||| || || || ||||| |||||
Sbjct 696 ATTTGCGTATGCAGGTCACAACGTCGTGTTGGAGATTCAAGCTACTATTCCTTCAACTCC 755
Query 1020 GGAGATGCCATCCAAGGTCCCAATGTGGAGAGGAGTTATTGTAGCCTACATTGTAGTCGC 1079
|||| ||||| ||| | ||||||||| ||||||| | || ||||| | || |||||
Sbjct 756 TGAGAAACCATCAAAGATTGCAATGTGGAAAGGAGTTGTAGTTGCCTATGTCGTGGTCGC 815
Query 1080 CATCTGTTACTTCCCTGTAGCATTCCTCGGCTATTATATCTTTGGAAACAGCGTTGATGA 1139
||| || |||||||| || |||||| | |||| ||||| ||||||||||| || || ||
Sbjct 816 CATATGCTACTTCCCCGTTGCATTCGTTTGCTACTATATTTTTGGAAACAGTGTGGACGA 875
Query 1140 CAACATCCTCATCACTTTGGAGAAGCCTATCTGGCTTATTGCTATGGCTAACATGTTCGT 1199
||| || ||||| || ||| |||| || ||||||||||| || || |||||| |||||
Sbjct 876 CAATATTCTCATGACGTTGCAGAAACCCATCTGGCTTATCGCCATTGCTAACGCATTCGT 935
Query 1200 GGTTATCCATGTCATTGGAAGCTATCAGATATTTGCAATGCCAGTTTTTGACATGCTCGA 1259
|||| |||||||||||||||||||||| |||| |||||||| || ||||||||||| ||
Sbjct 936 GGTTGTCCATGTCATTGGAAGCTATCAAATATACGCAATGCCGGTCTTTGACATGCTTGA 995
Query 1260 AACCGTTTTGGTCAAA-AAGATGAAT-TTCAATCCTTCTTTCAAGCTCCGCTTCATTACT 1317
|||| ||||||| ||| |||||| || ||| ||| || ||||| ||||||||||| |||
Sbjct 996 AACCTTTTTGGT-AAAGAAGATG-ATGTTCGCTCCGTCCTTCAAACTCCGCTTCATCACT 1053
Query 1318 CGTAGTCTTTACGTCGCTTTCACGATGATTGTTGCGATATGCGTCCCGTTTTTCGGTGGA 1377
|||| ||| || || |||||||||||| ||||||| |||||| |||| ||||| ||||||
Sbjct 1054 CGTACTCTATATGTTGCTTTCACGATGTTTGTTGCTATATGCATCCCATTTTTTGGTGGA 1113
Query 1378 CTACTCGGCTTCTTTGGAGGATTCGCCTTTGCCCCAACAACTTACTACCTTCCATGCATT 1437
||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1114 TTACTCGGTTTTTTTGGAGGATTCGCCTTTGCCCCAACAACTTACTATCTACCATGCATC 1173
Query 1438 ATGTGGCTC-GTTCTCAAGAAACCAAAGAGGTTTGG-TCTATCTTGGAC-AGCTAACTGG 1494
|||||||| || ||||||||||||||| || ||| | | |||||| | ||| |||
Sbjct 1174 ATGTGGCTTTGTA-TCAAGAAACCAAAGAAGTATGGAT-TGTCTTGGTGTAT-TAATTGG 1230
Query 1495 TTCTGCATCA-TAGTAGGAGTTCTTTTGACGATCCTTGC-CCCAATTGGAGGACTCAGAA 1552
|| ||||| | |||| || ||| | ||||||||| | || |||| |||| || |||||||
Sbjct 1231 TTTTGCAT-AGTAGTTGGTGTTATATTGACGATCGTAGCTCCCA-TTGGTGGCCTCAGAA 1288
Query 1553 CCATCATTATCA-ACGCCAAGACCTACAAGTTCTTCTCTT 1591
|||| |||||| | ||||| | |||||| ||||||||||
Sbjct 1289 CCATTATTATCTCA-GCCAAAAACTACAAATTCTTCTCTT 1327
> Ahg947663 jgi|Araly1|947663|scaffold_703892.1
Length=1388
Score = 475 bits (257), Expect = 4e-133
Identities = 872/1160 (75%), Gaps = 78/1160 (7%)
Strand=Plus/Plus
Query 323 TCGACGATTGGTTACCGATCACATCTTCCAGAAACGCTAAGTGGTGGTACTCTGCTTTTC 382
|||| ||||||||||| || || || || ||||| |||||||||||||||||||||||||
Sbjct 97 TCGATGATTGGTTACCAATTACTTCATCAAGAAATGCTAAGTGGTGGTACTCTGCTTTTC 156
Query 383 ACAATGTCACCGCCATGGTTGGTGCTGGTGTTCTTAG-CTTGCCCT-ACGCTATGTC-CA 439
||||||||||||||||||| ||||| || |||||| | || |||| |||| ||||| ||
Sbjct 157 ACAATGTCACCGCCATGGTCGGTGCCGGAGTTCTTGGACT--CCCTTACGCCATGTCTCA 214
Query 440 ATCTCGGATGGGGACCTGGAGT-GACGATTAT-GGTGATGTCATGGATCATAACGTTGTA 497
|||||||||||||| ||| | | | | | | ||| | |||||| ||||||| | ||
Sbjct 215 G-CTCGGATGGGGACCAGGAATTG-C-AGTGTTGGTTCTATCATGGGTCATAACACTATA 271
Query 498 CACACTGTGGCAAATGGTGGAGATGCATGAGATTGTTCCAGGGAAGAGGCTTGATAGGTA 557
|||| | |||||||||||||| |||||||| || ||||| |||||| | ||||| | ||
Sbjct 272 CACATTATGGCAAATGGTGGAAATGCATGAAATGGTTCCTGGGAAGCGTTTTGATCGTTA 331
Query 558 TCACGAGCTAGGTCAACACGCTTTTGGTGAAAAGCTTGGCCTATGGATCGTCGTGCCGCA 617
|| ||||| || |||||||| ||||| || ||||| || || | ||||| ||||||||
Sbjct 332 CCATGAGCTTGGACAACACGCGTTTGGAGAGAAGCTCGGTCTTTATATCGTTGTGCCGCA 391
Query 618 GCAGCTT-ATCGTGGAGGTCGGTGTT-GACATCGTTTATATGGTCACAGGAGG-AGCATC 674
|| || ||||| || |||||||| | |||||||||||||||||| ||||| | |||
Sbjct 392 ACAA-TTGATCGTTGAAATCGGTGTTTG-CATCGTTTATATGGTCACTGGAGGCAA-ATC 448
Query 675 CCTCAAGAAAGTCCATCAACTAGTCTGTCCCGATTGCAAAG-AGATCAGAACT-ACGT-T 731
| |||||| | ||| | || || ||| |||||| ||| | |||| |||| || | |
Sbjct 449 TTTAAAGAAATTTCATGAGCTTGTTTGTGACGATTGTAAACCA-ATCA-AACTTACTTAT 506
Query 732 TTGGATCATGATCTTTGCTTCCGTCCACTTTGTTATCTCTCACCTTCCCAATTTCAACTC 791
|| ||||||||||||||||| || ||||| || ||||||| |||||||||||||| ||
Sbjct 507 TTC-ATCATGATCTTTGCTTCTGTTCACTTCGTCCTCTCTCATCTTCCCAATTTCAATTC 565
Query 792 TATCTCCATCATCTCACTTGCCGCGGCTGTTATGTC-CTTAACTTACTCAACTATTGCTT 850
|||||| | | || ||||| || || |||||||| || | || ||||||| || || |
Sbjct 566 CATCTCCGGCGTTTCTCTTGCTGCTGCCGTTATGTCTCTCAGCT-ACTCAACAATCGCAT 624
Query 851 GGGC-TGCATCCGTGCA--CAAAGGGGTACATCCAGATGTGGACTACTCTCCTAGAGC-A 906
|||| | |||| | || |||||| || || ||| || | ||| | || ||| |
Sbjct 625 GGGCAT-CATCAG--CAAGCAAAGGCGTTCAAGAAGACGTTCAATACGGTTATAAAGCGA 681
Query 907 T--CAACCGATGTTGGAAAAGTATTCAACTTCTTGAATGCG-TTG-GGAGATGTGGCTTT 962
|||| | | || | ||| ||||| ||||| | ||| || || |||||||| ||
Sbjct 682 AAACAAC--A-GCCGGTACAGTTTTCAATTTCTTCA--GCGGTTTAGGTGATGTGGCATT 736
Query 963 TGCTTATGCAGGTCACAACGTTGTG-TTGGAGATTCAGGCCACAATCCCTTCGACTCCGG 1021
|||||| || ||||| || || || ||| |||| || || || |||||||| || || |
Sbjct 737 TGCTTACGCGGGTCATAATGTGGTCCTTG-AGATCCAAGCAACTATCCCTTCAACGCCTG 795
Query 1022 AGATGCCATCCAA-GGTCCCAATGTGGAGAGGAGTTATTGTAGCCTACATTGTAGTCGC- 1079
||| || || || ||||||| ||||||||||||| || || || || || || || ||
Sbjct 796 AGAAACCCTCAAAAGGTCCCA-TGTGGAGAGGAGTCATCGTTGCTTATATCGTCGTTGCG 854
Query 1080 CATCTGTTACTTCCCTGTAGCAT-TCCTCGGCTATTATATCTTT-GGAAACAGCGTTGAT 1137
| ||||||| |||||||| || | | |||| |||||||| ||| || ||| | || ||
Sbjct 855 C-TCTGTTATTTCCCTGTGGC-TCTAGTCGGATATTATAT-TTTCGGGAACGGAGTGGAA 911
Query 1138 GACAACATCCTCAT--CACTTTGGAGAAGCCTATC-TGGCTTATT-GCTATGGCTAACAT 1193
|| ||||| ||||| ||||| || || || | ||| ||| | || | || |||||
Sbjct 912 GATAACATTCTCATGTCACTTAAGA-AA-CCGG-CGTGG-TTAATCGCGACAGCGAACAT 967
Query 1194 GTTCGTGGTTATCCATGTCATTGGAAGCTATCAGATATTTGCAATGCCAGTTTTTGACAT 1253
||||| || ||||||||||| || || || ||||||| ||||||||| || ||||| ||
Sbjct 968 CTTCGTCGTGATCCATGTCATCGGTAGTTACCAGATATATGCAATGCCGGTATTTGATAT 1027
Query 1254 GCTCGAAACCGTT-TTGGTCAAAAAGATGAATTTCA-ATCCTTCTTTCAAGCTC--CGCT 1309
| | || || || |||||||| ||| | ||||||| | || | ||| ||| || |
Sbjct 1028 GATGGAGACT-TTATTGGTCAAGAAGCTAAATTTCAGA-CCAACCA-CAA-CTCTTCGGT 1083
Query 1310 TCATTACTC-GTAGTCTT-TACGTCGCTTTCA-CGATGATTGTTGCGATATG-CGTC-CC 1364
|| || || ||| | || ||||| ||| || | ||| |||||| | |||| | | ||
Sbjct 1084 TCTTTG-TCCGTAAT-TTCTACGTTGCTG-CAACTATGTTTGTTG-G-TATGACCTTTCC 1138
Query 1365 GTTTTTCGGTGGACTACTCGGC-TTCTTTGGAGGATTCGCCTTTGCCCCAACAACTTACT 1423
||| ||||| || || | ||| |||||||| |||||||| ||||| ||||| || ||||
Sbjct 1139 GTTCTTCGGAGGGCTTTT-GGCGTTCTTTGGTGGATTCGCGTTTGCTCCAACCACATACT 1197
Query 1424 ACCTTCCATGCATTATGTGG 1443
||| || ||||| || |||
Sbjct 1198 TCCTCCCTTGCATCATTTGG 1217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65629492135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5