BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G24405.1

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg472907 jgi|Araly1|472907|fgenesh2_kg.1__2861__AT1G24405.1         582    5e-166


> Ahg472907 jgi|Araly1|472907|fgenesh2_kg.1__2861__AT1G24405.1
Length=397

 Score =  582 bits (315),  Expect = 5e-166
 Identities = 378/406 (93%), Gaps = 13/406 (3%)
 Strand=Plus/Plus

Query  4    GAAGATGGATTCTGGACTATCATGGGCTGATCAATGGGATTACAACTCTGATCCTCCTCC  63
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GAAGATGGATTCGGGACTATCATGGGCTGATCAATGGGATTACAACTCTGATCCTCCTCC  60

Query  64   AAATTCAAGTAACGAAGACGATaagaagaagaagaagaagaagaagaaggaagaTGGAAG  123
            ||||||||||||||||||||||      ||| | || |||||||||||||||||||||||
Sbjct  61   AAATTCAAGTAACGAAGACGAT------AAG-A-AA-AAGAAGAAGAAGGAAGATGGAAG  111

Query  124  CAAAAGCGGTATCGGGAAGGCCATACTTGGATTCAAATGGATGAAACTTGGCAAGAAATC  183
            |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct  112  CAAAAGCGGTATCGGGAAGGCCATACTTGGCTTCAAATGGATGAAACTTCGCAAGAAATC  171

Query  184  TGATAAGTAATCAATAGGTTATTTGTTTAGTTACAAAAGGGTTATTGATTCATCTGTTCC  243
            |||||||| |||| |||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct  172  TGATAAGTGATCATTAGGTTATTTGTTTAGTTACGAAAGAGTTATTGATTCATCTGTTCC  231

Query  244  TTGTGATTAATCCATTAAGTTCTGCTTCTCTCTTTTAACCATTCTTCTGATTGTAATTGT  303
            ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct  232  TTGTGATTAATCCATTAAGTTATGCTTCTCTCTTTTACCCATTCTTCTGATTGTAATTGT  291

Query  304  TAAATCTTTAACATTTAGAAAGTTCGTTGGTTGCGGTTGATTGTGTATTTATATTTTT-G  362
            |||||||||||||||||||||||| |||| |||||||||||||||| ||||| ||||| |
Sbjct  292  TAAATCTTTAACATTTAGAAAGTTTGTTGATTGCGGTTGATTGTGTCTTTATCTTTTTTG  351

Query  363  TTGGTGAGAATTTAATAGCGACC---AGGAATTGTGTTTTTGTTTT  405
             |||||||||||||||||| |||   ||||||||||||||||||||
Sbjct  352  CTGGTGAGAATTTAATAGCAACCTGCAGGAATTGTGTTTTTGTTTT  397



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14537279409


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5