BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24420.1
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472906 jgi|Araly1|472906|fgenesh2_kg.1__2860__AT1G24420.1 1917 0.0
> Ahg472906 jgi|Araly1|472906|fgenesh2_kg.1__2860__AT1G24420.1
Length=1311
Score = 1917 bits (1038), Expect = 0.0
Identities = 1225/1316 (93%), Gaps = 10/1316 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAACGTTGAGATCTTATCAAGAGAAATAGTCAAACCGTCTTCTCCAACTCCA 60
||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGAGAAGAAAGTTGAGATCCTATCAAGAGAAATAATCAAACCGTCTTCTCCAACTCCA 60
Query 61 GATGATAAGAGAATTCTCAATCTCTCTCTTCTTGATATCCTCAGCTCACCAATGTACACA 120
||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||
Sbjct 61 AATGATAAGAGAATTCTCAATCTCTCTCTTCTTGATGTACTCAGCTCACCGATGTACACA 120
Query 121 GGAGCTCTTCTCTTTTACGCAGCTGATCCTCAGAACCTTCTAGGTTTTTCAA-CAGAGGA 179
||||| ||||||||||||||||| |||||||| |||||| |||| |||| || |||||||
Sbjct 121 GGAGCACTTCTCTTTTACGCAGCGGATCCTCAAAACCTTTTAGG-TTTTGAATCAGAGGA 179
Query 180 GACTTCCTTGAAGCTCAAGAAATCTCTGTCTAAAACCTTACCAATCTTCTACCCTCTTGC 239
||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 180 GACATCCTTGAAGCTCAAGAAATCTCTGTCTGAAACTTTACCAATCTTCTACCCTCTTGC 239
Query 240 CGGAAGAATCATAGGAAGTTTCGTCGAATGTAATGATGAAGGAGCTGTGTTTATAGAAGC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGGAAGAATCATAGGAAGTTTCGTCGAATGTAATGATGAAGGAGCTGTGTTTATAGAAGC 299
Query 300 TCGAGTTGACCATCTTCTCTCGGAGTTTCTCAAGTGCCCTGTTCCTGAATCATTGGAATT 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 TCGAGTTGACCATCTTCTCTCGGAGTTTCTCAAGTGCCCTGTTCCTGAATCATTGGAACT 359
Query 360 ACTCATTCCTGTTGAAGCTAAGTCAAGAGAAGCTGTTACATGGCCTGTGTTGTTAATCCA 419
|||||||||||||||||| ||||||||||| || || ||||||||||| ||| |||||||
Sbjct 360 ACTCATTCCTGTTGAAGCCAAGTCAAGAGAGGCAGTGACATGGCCTGTCTTGCTAATCCA 419
Query 420 AGCTAATTTCTTCAGCTGTGGAGGATTGGTTATCACAATCTGCGTTTCTCATAAGATCAC 479
||| | |||||||||||| |||||||| ||||||||||| ||| ||||||||||||||||
Sbjct 420 AGCCAGTTTCTTCAGCTGCGGAGGATTAGTTATCACAATTTGCATTTCTCATAAGATCAC 479
Query 480 TGATGCTACCTCTTTAGCAATGTTCATCAGAGGATGGGCTGAGTCCTCAAGAGGTTTGGG 539
|||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 480 TGATGCAACCTCTTTAGCCATGTTCATCAGAGGATGGTCTGAGTCCTCAAGAGGTTTGGG 539
Query 540 GATTACTTTGATTCCTAGTTTCACCGCTTCTGAAGT-CTTTCCTAAACC-ACTTGATGAG 597
|||||||||||||||||||||||| ||| | || || ||||||| ||| | ||||||||
Sbjct 540 GATTACTTTGATTCCTAGTTTCACTGCTGCGGA-GTTCTTTCCTCTACCTA-TTGATGAG 597
Query 598 CTTCCTTCAAAACCGATGGATCGCAAAGAAGAGGTTGAAGAGATGAGTTGTGTGACAAAG 657
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 598 CTTCCCTCAAAACCGATGGATCGCAAAGTCGAGGTTGAAGAGATGAGTTGTGTGACAAAG 657
Query 658 AGGTTTGTGTTTGATGCTTCGAAGATCAAGAAACTTAGAGCCAAAGCTTCAAGAAACCTT 717
|||||||||||||||||||| || ||||||||||| |||||| ||| |||||| ||||||
Sbjct 658 AGGTTTGTGTTTGATGCTTCAAAAATCAAGAAACTCAGAGCCGAAGTTTCAAGCAACCTT 717
Query 718 GTGAAGAATCCAACACGTGTTGAAGCCGTCACAGCTCTGTTTTGGAGATGCGTTACTAAG 777
|| |||||||| || ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 718 GTCAAGAATCCTACCCGTGTTGAAGCCGTCACAGCTCTGTATTGGAGATGCGTTACTAAG 777
Query 778 GTTTCAAGATTGAGTTCTCTAACACCAAGAACTTCAGTGCTGCAGATACTAGTGAACCTA 837
| |||||||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||
Sbjct 778 GCTTCAAGATCGAGTTCTCCAACACCAAGAACTTCGGTGCTGCAGATACTAGTGAGCCTA 837
Query 838 AGAGGAAAGGTAGATTCTTTGTGTGAAAACACAATTGGGAATATGCTTTCCCTCATGATT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 838 CGAGGAAAGGTAGATTCTTTGTGTGAAAACACAATTGGGAATATGCTTTCCCTCATAATT 897
Query 898 CTCAAGAACGAAGAAGCTGCGATTGAAAGAATTCAAGATGTGGTTGATGAGATAAGGA-G 956
|||||||||||||||||| ||| || |||||||||||||||||||||||| |||| | |
Sbjct 898 CTCAAGAACGAAGAAGCTAAGATAGATAGAATTCAAGATGTGGTTGATGAGCTAAG-ACG 956
Query 957 GGCAAAGGAAATATTCAGCTTGAACTGCAAGGAGATGTCGAAATCTTCGTCTAGAATTTT 1016
|||||||||||| ||||||||||| |||||||||| ||||||||| ||||| ||||||||
Sbjct 957 GGCAAAGGAAATCTTCAGCTTGAATTGCAAGGAGAAGTCGAAATCCTCGTCGAGAATTTT 1016
Query 1017 TGAGCTTTTGGAAGAGATTGGGAAAGTATATGGAAGAGGAAA-TGAGATGGATTTGTGGA 1075
||||||||||||||||||| |||||||| ||||||||| ||| |||| |||| |||||||
Sbjct 1017 TGAGCTTTTGGAAGAGATTAGGAAAGTACATGGAAGAG-AAACTGAGGTGGACTTGTGGA 1075
Query 1076 TGAGTAATAGCTGGTGTAAGCTCGGCTTGTACGATGCTGATTTCGGATGGGGAAAGCCGG 1135
|||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct 1076 TGAGTAATAGCTGGTGTAAGCTCGGCATGTACGAGGCCGATTTCGGATGGGGAAAGCCGG 1135
Query 1136 TTTGGGTGACCGGAAGAGGCACTTCCCATTTCAAGAACTTGATGTTATTGATTGATACCA 1195
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1136 TTTGGGTGACCGGAAGAGGCACTTCCAATTTCAAGAACTTGATGTTGTTGATTGATACCA 1195
Query 1196 AAGATGGAGAAGGAATTGAAGCTTGGATCACTCTTACGGAAGAACAAATGTCACTGTTTG 1255
||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |
Sbjct 1196 AAGATGGAGAAGGAATTGAAGCTTGGATCACTCTTACAGAAGAACACATGTCGCTGTTCG 1255
Query 1256 AATGTGATCAAGAGCTTCTTGAATCAGCTTCCCTAAATCCCCCTGTTTTAATCTAG 1311
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1256 AATGTGATCAAGAACTTCTTGAATCAGCTTCCCTGAATCCCCCTGTTTTAATCTAG 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49026071262
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5