BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24430.1
Length=1504
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472905 jgi|Araly1|472905|fgenesh2_kg.1__2859__AT1G24430.1 1962 0.0
> Ahg472905 jgi|Araly1|472905|fgenesh2_kg.1__2859__AT1G24430.1
Length=1337
Score = 1962 bits (1062), Expect = 0.0
Identities = 1253/1344 (93%), Gaps = 17/1344 (1%)
Strand=Plus/Plus
Query 88 CATCATCTCTCTTTCCTTGATCAGCTTGCTCCTCCCATTTTCATGCCTTTCCTTTTCTTT 147
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 1 CATCATCTCTCTTTCCTTGATCAGCTTGCTCCACCTATCTTCATGCCTTTCCTTTTCTTT 60
Query 148 TACCATAACAAGACTAATCTATCAGACAAAGAACGAAGTGATCACATCAAGAGTTCTTTG 207
|||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| |||
Sbjct 61 TACCATAACAAGACAAATCTCTCAGACAAAGAACGAAGTGATCACTTCAAGAGTTCCTTG 120
Query 208 TCTGAAATATTGAATCTCTATTACCCCTTGGCAGGACGCATCAAGAACTCGGGTGATGTT 267
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 TCAGAAATATTGAATCTCTATTACCCCTTGGCAGGACGCATCAAGAACCCGGGTGATGTT 180
Query 268 GTTGTGTGCAACGATGTGGGTGTGTCTTTCGTCGAAGCCAAAGCCGATTGCAACATGTCA 327
||||| || |||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GTTGTATGTAACGATATGGGTGTGTCTTTTGTCGAAGCCAAAGCCGATTGCAACATGTCA 240
Query 328 CAGATTCTAGAAAACCCAAATCCTAACGAACTTAACAAGCTTCATCCATTCGAA-TTCCA 386
|||||||||| |||||| ||||| || ||||| |||||| ||| ||||||| || || ||
Sbjct 241 CAGATTCTAGTAAACCCTAATCCCAATGAACTCAACAAGTTTCTTCCATTC-AAGTTTCA 299
Query 387 TGAAGTGAGTGACGTGCCTCTCACGGTACAGCTCACTTTCTTTGAATGTGGCGGCTTAGC 446
||||| ||||||||||||||| | ||||||| ||||||||||||||||||||||||||||
Sbjct 300 TGAAGCGAGTGACGTGCCTCTAAGGGTACAGGTCACTTTCTTTGAATGTGGCGGCTTAGC 359
Query 447 ACTCGGAATAGGCCTTTCTCATAAACTCTGTGATGCAC-TGTCTGGTCTCATCTTCGTCA 505
||||||| |||||||||||||||||||||||||||| | |||| || ||||||||| |||
Sbjct 360 ACTCGGAGTAGGCCTTTCTCATAAACTCTGTGATGC-CTTGTCCGGCCTCATCTTCATCA 418
Query 506 ACAGTTGGGCAGCTTTTGCTCGTGGCCAGACTGATGAAATCATTACTCCTTCTTTTGATC 565
| ||||||||||||||||||||||| | ||| |||||||||||||||||||||| ||||
Sbjct 419 AAAGTTGGGCAGCTTTTGCTCGTGGTGACACTAATGAAATCATTACTCCTTCTTTCGATC 478
Query 566 TCGCCAAGATGTTTCC-TCCGTGCGACATAGAAAACT-TAAACATGGCTACAGGTATCAC 623
|||||||||||||||| ||| || || || ||||| | ||||||||||||||||||||||
Sbjct 479 TCGCCAAGATGTTTCCGTCC-TGTGATATGGAAAA-TCTAAACATGGCTACAGGTATCAC 536
Query 624 GAAGGAGAACATAGTAACCAGACGCTTCGTGTTCTTGAGATCTTCTGTTGAGTCTTTAAG 683
||||||||| ||||||||| |||||| |||||||||| ||| |||||||||||||||||
Sbjct 537 AAAGGAGAACGTAGTAACCAAACGCTTTGTGTTCTTGAAATCCTCTGTTGAGTCTTTAAG 596
Query 684 AGAAAGATTCAGCGGAAACAAGAAGATCCGCGCGACACGTGTTGAGGTCTTATCGGTATT 743
||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||
Sbjct 597 AGAAAGATTCAGCGGAAACAAGAAGATTCGCGCCACACGTGTTGAGGCCTTATCGGTATT 656
Query 744 CATATGGAGCCGTTTCATGGCTTCAACAAACCATGATGATAAAACCGGAAAGATCTATAC 803
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 657 CATATGGAGCCGTTTCATGGCTTCAACAAACCAAGATGATAAACCCGGAAAGATCTATAC 716
Query 804 ACTGATTCATCCAGTGAACTTGCGTAGACAAGCAGATCCAG-ATATACCAGACAACATGT 862
| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 717 ATTGATTCATCCAGTGAACTTGCGTAGACAAGCAGATCC-GTATATACCAGACAACATGT 775
Query 863 TCGGGAACATCATGAGGTTCTCTGTTACTGTCCCTATGATGATAATCAATGAAAATGATG 922
|||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 776 TCGGGAACATCATGAGGTTCTCTGTTACTGTCCCTAAGACGATAATCAATGAACATGATG 835
Query 923 AAGAAAAGGCTTCTCTTGTGGATCAGATGAGAGAGGAGATTAGAAAGATAGACGCAGT-T 981
||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||| |
Sbjct 836 AAGAAAAAGCTTCTCTTGTGGAGCAGATGAGAGAGGAGATTAGAAAGATTGATGCAGTGT 895
Query 982 TACGTGAAGAAACTTCAAGAAGATAACAGAGGACACCTAGAGTTTCTAAACAAACAAGCT 1041
| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 896 T-CGTGAAGAAACTTCAAGAAGATAACAGAGGACACCTAGAGTTTCTTAGCAAACAAGCT 954
Query 1042 TCAGGTTTTGTCAATGGAGAGATTGTATCGTTTAGCTTCACGAGCCTCTGCAAATTTCCG 1101
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 955 TCAGGTTTTGTCAATGGAGAGATTGTGTCGTTCAGCTTCACGAGCCTCTGCAAATTTCCG 1014
Query 1102 GTGTATGAAGCAGATTTCGGATGGGGGAAACCTTTGTGGGTTGCCTCTGCAAGAATGAGC 1161
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GTTTATGAAGCAGATTTCGGATGGGGGAAACCTTTGTGGGTTGCCTCTGCAAGAATGAGC 1074
Query 1162 TACAAAAATCTTGTAGCTTTCATTGATACTAAGGAAGGTGATGGAATTGAAGCTTGGATC 1221
||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1075 TACAAAAATCTTGTAGCGTTCATTGATACTAAGGAAGGTGATGGCATTGAGGCTTGGATC 1134
Query 1222 AACCTTGACCAGAACGATATGTCTAGATTCGAAGCCGATGAGGAGTTGCTTCGCTATGTC 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 AACCTTGACCAGAACGATATGTCTAGATTCGAAGCCGATGAGGAGTTGCTTCGCTATGTC 1194
Query 1282 TCTTCAAACCCAAGTGTGAT-GGTCTCTGTATCTTGAGAAACAAGTAATCTATTAGTCGT 1340
|| ||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct 1195 TCCTCAAACCCAAGTGTGATTGG-CTCTGCATCTTGAGAAACAAGTAATCTATAAGTCGT 1253
Query 1341 TTCTAATGAGTTTGAGCTTGTTTTCCTTTTAAGTTTGTCTTTCAGATTTCATTC-C--CT 1397
|||||||||||||||| ||||||||||||||| |||||| ||||||||||||| | ||
Sbjct 1254 TTCTAATGAGTTTGAGTTTGTTTTCCTTTTAACTTTGTCAATCAGATTTCATTCTCTTCT 1313
Query 1398 TGTACTTAATGCATTCTTTTATAC 1421
||| ||||||||||| ||||||||
Sbjct 1314 TGTGCTTAATGCATTATTTTATAC 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56297382110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5