BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24440.1
Length=1264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921743 jgi|Araly1|921743|scaffold_103024.1 1282 0.0
> Ahg921743 jgi|Araly1|921743|scaffold_103024.1
Length=796
Score = 1282 bits (694), Expect = 0.0
Identities = 764/798 (96%), Gaps = 4/798 (1%)
Strand=Plus/Plus
Query 300 TTAGGGATTTAAGTTAAGGAGGATGTATTATCAGTTGACCAAGTCTTCTTACAGAGACTC 359
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTAGGGATTT-AGTAAAGGA-GATGTATTATCAGTTGACCAAGTCTTCTTACAGAGACTC 58
Query 360 TTTGAAGATTCTGGAGGCTGATATTGAGCACGCCAATGGACTGGCTGCTGAGATTCCAAT 419
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 59 TTTGAAGATTCTGGAGGCTGATATAGAGCACGCCAATGGACTGGCTGCTGAGATTCCAAT 118
Query 420 GGGAAAGAGCGGTGTGCGACTTCAGATGAAATTGGTGTGCAGCAATTTGGCTCCATTCTT 479
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GGGAAAGAGTGGTGTGCGTCTTCAGATGAAATTGGTGTGCAGCAATTTGGCTCCATTCTT 178
Query 480 CATATTCCTGC-TACAATGGATGGATTTCTCATGTCTGCTTCCAAGATATTTTGATTTCT 538
|||||||| | | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 179 TATATTCCT-CTTGCAATGGATGGATTTCTCATGTCTGCTTCCAAGATATTTCGATTTCT 237
Query 539 TCCACATACTCATATACAAGGTACGTGCTGATGGGCGGTGGAATCGATCTAGGTACGGAA 598
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 238 TCCACATACTCATATACAAGGTACGTGCTGATGGGCGGTGGAATCTATCCAGGTACGGAA 297
Query 599 GGAAAGCTACGATTAGGGAGTTTTACGGTGTTATATTACCATCACTTGAGCGACTTCATA 658
||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 298 GGAAAGCTACGATTAGGGAGTTTTACGGTGTGATACTACCGTCACTTGAGCGACTTCATA 357
Query 659 TCAACTTTGCTGACTTACCGGACGAAAGCTTGTGGTATCCGAATCCAAAAGCCATCACCA 718
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 358 TCAACTTTGCTGACTTACCGGACGAAAGCTTGTGGTATCCAAATCCCAAAGCCATCACCA 417
Query 719 AGAAGCAGTATGACATTGAAGGTAGCAGATACATGAATAGCATTGACTTGGAAAGAGAAG 778
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 418 AGAAGCAGTATGACATTGAAGGTAGCAGATTCATGAATAGCATCGACTTGGAAAGAGAAG 477
Query 779 ACGAATGCGGGATTTGCTTAGAGCCTTGCACCAAAATGGTGTTGCCAAACTGTTGTCATG 838
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 478 ACGAATGCGGGATTTGCTTAGAGCCTTGCACCAAAATGGTGTTGCCAAACTGCTGTCATG 537
Query 839 CCATGTGCATCAAATGTTACCGTAACTGGAACACAAAGTCGGAGTCATGCCCGTTTTGTC 898
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 538 CCATGTGCATCAAATGTTACCGGAACTGGAACACAAAGTCGGAGTCATGCCCCTTTTGTC 597
Query 899 GTGGCAGCATCAAGAGAGTGAACTCAGAGGATCTGTGGGTGCTAACTTGCGATGAAGATG 958
| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 598 GGGGCAGCATCAAGAGAGTGAACTCAGAGGATCTGTGGGTGCTGACATGCGATGAAGATG 657
Query 959 TGGTGGATCCAGAGACGGTCACCAAAGAGGATCTTCTTCGGTTCTACCTCCACATCAATA 1018
||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 658 TGGTGGATCCAGAAACAGTCACCAAAGAGGATCTTCTCCGGTTCTACCTCCACATCAATA 717
Query 1019 GCCTTCCTAAGGATTATCCAGAAGCGGCCTTCTTAGTCTACAACGAGTACTTGATATGAT 1078
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 718 GCCTCCCAAAGGATTATCCAGAAGCTGCCTTCTTAGTCTACAACGAGTACTTGATATGAT 777
Query 1079 TTTATCCCGAAACATAAA 1096
|| ||||||||||| |||
Sbjct 778 TTGATCCCGAAACACAAA 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47234294163
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5