BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24450.1
Length=836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472903 jgi|Araly1|472903|fgenesh2_kg.1__2857__AT1G24450.1 937 0.0
> Ahg472903 jgi|Araly1|472903|fgenesh2_kg.1__2857__AT1G24450.1
Length=661
Score = 937 bits (507), Expect = 0.0
Identities = 619/671 (92%), Gaps = 15/671 (2%)
Strand=Plus/Plus
Query 49 ATGGCGActcttcgtttcactctacttcttcttgtc-ttcgtcgtcgggatcttcttctc 107
|||||||||||||||||||||||||||||||||||| || | | |||||||||||| |||
Sbjct 1 ATGGCGACTCTTCGTTTCACTCTACTTCTTCTTGTCGTT-GCCATCGGGATCTTCTCCTC 59
Query 108 cttctcCTCCGTTTCTCATGTACGTGCAACAAGTGAAATCAATCTCAGGATCGAACCATT 167
||| | ||| | | ||| || | |||||||||||||||||||||||||||||||||||
Sbjct 60 CTT-TTCTCAG-GT-TCAAGTTCAAGCAACAAGTGAAATCAATCTCAGGATCGAACCATT 116
Query 168 TTCCTCGCCGTTCGCGACGGATCTTGCAAAGCTGCAAACTCAAATTGGCTACAAGTTTAA 227
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 117 TTCCTCGCCGTTCGCGACGGATCTTGCAACGCTGCAAACTCAAATTGGCTACAAGTTTAA 176
Query 228 CAACATCAACCTTCTTCGCCGTGCAATGACTCATGCTTCTTTTTCTCAAGAGAACAACAA 287
||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 177 CAACACCAACCTTCTTCGCCGTGCTATGACTCATGGTTCTTTTTCTCAAGAGAACAACAA 236
Query 288 AGCCTTGAGTATCTTTGGAACCCATATCATTGAAACCGCGGTCTCTCTTCAGTTTCTCGC 347
|||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||
Sbjct 237 AGCCTTGAGTATCTTTGGAACCAATATCATTGAAACCTCGGTCTCTCTTCAGTTACTCGC 296
Query 348 TAAAGATATCGATATTTCCTCGAAAGCACTGGGCCGTTTGATATCAGAGGTTTCAAATGT 407
||||||||||||||| ||||||||||| || ||||||||||| || |||||||||||||
Sbjct 297 TAAAGATATCGATATCTCCTCGAAAGCTTTGAGCCGTTTGATAGCACAGGTTTCAAATGT 356
Query 408 GGAGTCCTCATGTGCTCTTGACGGAGACCGGTTGGGTTTGGGGAAGATAATCAGAGTTTC 467
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 357 GGAGTCCTCTTGTGCTCTTGACGGAGACCGGTTGGGTTTGGGGAAGATAATTAGAGTTTC 416
Query 468 TACTAAGACAGATGCATCGAACTCGGCCATTCTTTGTACTGGCTTTAGGGCAATCTTTGG 527
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 417 TACTAAGACAGATGCATCGAACTCGGCCATTCTTTGTGCTGGCTTCAGGGCAATCTTTGG 476
Query 528 AGCTATAGCTATTGATGCTGGAACGGTTGATGAAGCCATCAAGGTTTTCTGGAAGGTACA 587
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 477 AGCTATTGCTATTGATGCTGGAATGGTTGATGAAGCCATCAAGGTTTTCTGGAAGGTACA 536
Query 588 TGGAGCTCGAGCTGGAAGACTAGTCTCTATGTTGTAAATTAGAGCTTTATTAAGTCATTA 647
||||| | |||||||||||||||| |||||||||||| |||||||| ||| || | |
Sbjct 537 TGGAGATAGAGCTGGAAGACTAGTGTCTATGTTGTAATTTAGAGCTGTAT---GT--T-A 590
Query 648 AAGTCATGTTTTTTCGGATGCCAAGTTCTAAGAGACTCTT-CT-C-C-AATGCTTAGAAT 703
||||| |||||||||||||||||||||||||||||||||| || | | || |||||||||
Sbjct 591 AAGTCTTGTTTTTTCGGATGCCAAGTTCTAAGAGACTCTTTCTTCTCCAAGGCTTAGAAT 650
Query 704 TTTATGGTTGA 714
| |||||||||
Sbjct 651 TATATGGTTGA 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30917685687
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5