BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G24480.1
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472900 jgi|Araly1|472900|fgenesh2_kg.1__2854__AT1G24480.1 1146 0.0
> Ahg472900 jgi|Araly1|472900|fgenesh2_kg.1__2854__AT1G24480.1
Length=756
Score = 1146 bits (620), Expect = 0.0
Identities = 708/751 (94%), Gaps = 4/751 (1%)
Strand=Plus/Plus
Query 1 ATGAAGCAACCAAAGCCGATTCTGAAATACGTCTTAGTCTCTATCTTCCTCACTCTCCCT 60
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1 ATGAAGCAACCAAAGCCGATTCTGAAATACGTCTTGGTCTCTATCTTCCTCAGTCTCCCT 60
Query 61 CTCATCCTGTTCTTCTCTATACAACTACGTAAACCCGAAAAAGAACTCATCAGGATCCGA 120
||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 CTCATTCTCTTCTTCTCTATACAAGTACGTAAACCCGAAAAAGAACTCATCAGGATCCGA 120
Query 121 CCAGGTTACACGTCTTACGATTACTACATCCAACGACAGCTCAACAAAACGCTTAACCCT 180
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 CCCGGTTACACGTCTTACGATTACTACATCCAACGACAGCTCAACAAAACACTTAACCCC 180
Query 181 AGGCTTCGTACGATATGGATGACACGAGACTGGGACCGTAAGATCAAAGTGTTCTCAAGA 240
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 AGGCTACGTACAATATGGATGACACGAGATTGGGACCGTAAGATCAAAGTGTTCTCAAGA 240
Query 241 TTCTTCCAAGATCTGAAACGTCAAGGCCTCTTATCCAAAGACTCTAAATGTCTCTGCCTC 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 241 TTCTTCCAAGATCTGAAACGTCAAGGCCTCTTATCCAACGACTCTAAATGTCTCTGTGTC 300
Query 301 GGAGCTCGAGTCGGGCAAGAAGTGGAGGCCCTGAAACGTGTAGGCGTAAACGACTCGGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAGCTCGAGTCGGGCAAGAAGTGGAGGCCCTGAAACGTGTAGGCGTAAACGACTCGGTG 360
Query 361 GGAATGGATCTGGTGCCATATCCGCCGTTGGTGGTCAAAGGTGACTTTCATCACCAGCCG 420
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 361 GGAATGGATCTGGTGCCGTATCCCCCGTTGGTGGTCAAAGGAGACTTTCATCACCAGCCG 420
Query 421 TTCGATGATGAGACTTTTGATTTTGAATTCTCCAACGTGTTTGATCATGCACTTTATCCG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCGATGATGAGACTTTTGATTTTGAATTCTCCAACGTGTTTGATCATGCACTTTATCCG 480
Query 481 GACAAGTTTGTTGGAGAGATCGAACGGACACTGAGACCTGGAGGTTTATGTGTTTTACAC 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 GACAAGTTTGTTGGAGAGATCGAACGGACACTGAGACATGGAGGTTTATGTGTTTTACAC 540
Query 541 GTGGCTCTCTCTACACGATCGGATAAGTATTCAGCCAATGATCTCTTCAGTGTGGAGGCA 600
|||||||| |||||||| |||||||||||||||||||||||||| | |||||||||||||
Sbjct 541 GTGGCTCTTTCTACACGGTCGGATAAGTATTCAGCCAATGATCTGTACAGTGTGGAGGCA 600
Query 601 TTGGTGAAACTATTCCGACAATCGGAGGTGGTTCATGTAAGAAATGTGGACGGCTTTGGG 660
|||||||| || || |||| ||||||||| |||||||| |||||||| |||||||| |||
Sbjct 601 TTGGTGAAGCTGTTTCGACGATCGGAGGTCGTTCATGTCAGAAATGTCGACGGCTTCGGG 660
Query 661 TTGGATACAGAGGTCGTGTTTAGGAAGAAAAGGGATTCATCCATCCTAGTTCGGTCTTGA 720
|||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 661 TTGGATACGGAGGTCGTGTTTAGGAAGAAAAGGGAGTCATCCATACTAGTCCGGTCTTGA 720
Query 721 ATTATT-TGTTTCGTACTT--AAATAT-ATT 747
|| || ||| ||||| | |||||| |||
Sbjct 721 TTTTTTATGTCACGTACATCGAAATATTATT 751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29545260675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5